BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35310.1
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497432 jgi|Araly1|497432|fgenesh2_kg.457__2__AT2G35310.1 1550 0.0
Ahg482495 jgi|Araly1|482495|fgenesh2_kg.4__1555__AT2G35310.1 1537 0.0
> Ahg497432 jgi|Araly1|497432|fgenesh2_kg.457__2__AT2G35310.1
Length=1129
Score = 1550 bits (839), Expect = 0.0
Identities = 1049/1147 (91%), Gaps = 28/1147 (2%)
Strand=Plus/Plus
Query 1 TCTCAAACTCTCATAACCAGCgagagtgagtgagagagtagagagtgtgtggagagaTAC 60
||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct 1 TCTCAAACTCTCATAACCAGC-------AGCGAGAGAGTAGAGAGTGTGTGGAGAGAGAC 53
Query 61 TAGGAAGTTGAAGGAAAAAGCGAGAAAGATGGCTAGAAACAGTGACAATGATATGTGCAA 120
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 54 TAGGAAGTTGAAGGAAAAAACGAGAAAGATGGCTAGAAACAGTGACTATGATATGTGCAA 113
Query 121 AGAAGAACGGAAGAGAGAGAGCTTCTTCAAGGTTCTACAGAGAGTTGATATTTCTTCTGA 180
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 114 AGAAGAACGGAAGAGAGAGAGCTTCTTCAAGGTTCTACAAAGAGTTGATTTTTCTTCCGA 173
Query 181 GAACATGAGAGCACTTCCTTACGACTTTGTGAGAAGCTTCTCCAACAATGAGCTCTCTCG 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 174 AAACTTGAGAGCACTTCCTTACGACTTTGTGAGAAGCTTCTCCAACAATGAGCTCTC-CG 232
Query 241 -TAAGATGAAGATAAAAGCTCGATGGGGAAGTTCTTGGGAAGTAGAAATCTGCAAAAATC 299
|||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct 233 GTAAGATGAAGATAAAAGCGCAATGGGGAAGTTCTTGGGAAGTAGAAATCTGCAAGAATC 292
Query 300 CAAGATTCTATTTCATGGAGAAATCCGGATGGGAGAAGTTTGTGAGTGACAATGCCTTGG 359
| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 293 CCAGATTCTATTTCATGGAGAAATCCGGATGGGTGAAGTTTGTGAGGGACAATGCCTTGG 352
Query 360 GAGCCAGTGAGTTTCTTACCTTCACTCACAAAGGGAATA-TGCGTTTTACAGTGAACATC 418
||| || ||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 353 GAGACAATGAGTTTCTTACCTTCACTCACAAAGG-AACAATGCGTTTTACAGTGAACATC 411
Query 419 TTCATGCAAGATGGCAAGGAGATGCTACAGCCTCCACAATCCATGTCCTTCATGGCTTCT 478
|||| ||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||
Sbjct 412 TTCAAGCAAGATGGCAAGGAGATGCTGCAGCCTCCACAATCCATGGCCTCCATGGCTTCT 471
Query 479 TCTAGGC-CA--C-C--TAAAAGAGAACAAGGAATACCTTCTCTTGCCACGACAATAGCA 532
||||||| | | | ||||| ||||||||||||| ||| |||||||||||||||| ||
Sbjct 472 TCTAGGCGCCGGCGCACTAAAACAGAACAAGGAATATCTTATCTTGCCACGACAATAACA 531
Query 533 GCTGAATCTAATGGAGGAGGGAACTACAAAAGGAAGCTCAACTTTGAGAAGAAGAAAGCT 592
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 532 GCTGAATCTAATGGAGGAGAAAACTACACAAGGAAGCTCAACTTTGAGAAGAAGAAAGCT 591
Query 593 GAGGAATCTCACAATTCCAAGAGGACCGATAAAGTCTTTAGTGTCCAGA-GAGAATCTGC 651
| |||||| || ||||||||||||||||| |||||||||||||||| || | || |||||
Sbjct 592 GCGGAATCCCAAAATTCCAAGAGGACCGAGAAAGTCTTTAGTGTCC-GAAGGGATTCTGC 650
Query 652 AGGTGCCTCTTCATCTTCTGTTGCAGAATTCTCCATGTTTATCAAAAAATCATACCTCAT 711
||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||| ||
Sbjct 651 AGGTGCCTCTTCATCTTCTGTTGCAGAATTCACCATCTTCATCAAGAAATCATACCTTAT 710
Query 712 CTACATGTGGTTCCCGAAATCTGTTCAAAGTATTCATATGCCGAAGCAGAGAACGATTTT 771
|| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 711 CTTCATGAGGATCCCGAAATCTGTTCAAAGTATTCATATGCCGATGCAGAGAACGATTTT 770
Query 772 CAAGATACATCACCCAAATATGAAGAAGTCATGGAATGTGGTTTACGTGGTGTCAGGGAC 831
|||||||||||| ||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 771 CAAGATACATCAGCCAAATATGAAGAAGTCATGGAATGTGGTTTACTTGGTGGCAAATAG 830
Query 832 GAAAT-CAAGCTTCTCTGCTGGATGGAAAGGTTTGGCTCAAGAATATCCTCTAGCAGTTG 890
| | |||||||||||| |||||||||| ||||||||||||| |||||| |||||||||
Sbjct 831 GGG-TGCAAGCTTCTCTGGTGGATGGAAACGTTTGGCTCAAGAGTATCCTGTAGCAGTTG 889
Query 891 GAGACACTTGCAAGTTTTCATTCATCAAACAACACGAGCTGATTCTCTTTGTCTCAAAAC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAGACACTTGCAAGTTTTCATTCATCAAACAACACGAGCTGATTCTCTTTGTCTCAAAAC 949
Query 951 CCTAAGAGGAGACTCACTAGTGAATAGTGATGATGAATGTGAAGGTGTCTACTGAGTAAA 1010
||||||||||| || ||| | ||||||||||| ||||||||||||| |||||| |||
Sbjct 950 CCTAAGAGGAG-CT-ACTC---ACTAGTGATGATGGATGTGAAGGTGTCAACTGAGAAAA 1004
Query 1011 AGACTGTTTATCAGTGTTGTCTTAAGTTTTAGTTTTATGTTATGACTTAGTTCGGTTTTA 1070
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1005 AGACTGTTTATCAGTGTTGTCTTAACTTTTAGTTTTATGTTATGACTTAGTTCGGTTTAA 1064
Query 1071 AGTTCAGAATGTCTATCGGATGGATCTATGTAGCTTGATATGATTGGGACCAATTTTAAT 1130
| |||||||||||||| || |||| |||||||||||||||| |||| ||||||||||||
Sbjct 1065 A-TTCAGAATGTCTATGGGGCGGATATATGTAGCTTGATATGTTTGG-ACCAATTTTAAT 1122
Query 1131 ATGTTGT 1137
|||||||
Sbjct 1123 ATGTTGT 1129
> Ahg482495 jgi|Araly1|482495|fgenesh2_kg.4__1555__AT2G35310.1
Length=1126
Score = 1537 bits (832), Expect = 0.0
Identities = 1024/1115 (92%), Gaps = 19/1115 (2%)
Strand=Plus/Plus
Query 32 gagagagtagagagtgtgtggagagaTACTAGGAAGTTGAAGGAAAAAGCGAGAAAGATG 91
|||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||
Sbjct 22 GAGAGAGTAGAGAGTGTGTGGAAAGAAACTAGGAAGTTGAAGGAAAAAACGAGAAAGATG 81
Query 92 GCTAGAAACAGTGACAATGATATGTGCAAAGAAGAACGGAAGAGAGAGAGCTTCTTCAAG 151
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 82 GCTAGAAACAGTGACTATGATATGTGCAAAGAAGAGCGGAAGAGAGAGAGCTTCTTCAAG 141
Query 152 GTTCTACAGAGAGTTGATATTTCTTCTGAGAACATGAGAGCACTTCCTTACGACTTTGTG 211
|||||||| ||||||||| ||||||| || ||| ||||||||||||||||||||||||||
Sbjct 142 GTTCTACAAAGAGTTGATTTTTCTTCCGAAAACTTGAGAGCACTTCCTTACGACTTTGTG 201
Query 212 AGAAGCTTCTCCAACAATGAGCTCTCTC-GTAAGATGAAGATAAAAGCTCGATGGGGAAG 270
|||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct 202 AGAAGCTTCTCCAACAATGAGCTCTC-CGGTAAGATGAAGATAAAAGCGCGATGGGGAAG 260
Query 271 TTCTTGGGAAGTAGAAATCTGCAAAAATCCAAGATTCTATTTCATGGAGAAATCCGGATG 330
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 261 TTCTTGGGAAGTAGAAATCTGCAAGAATCCCAGATTCTATTTCATGGAGAAATCCGGATG 320
Query 331 GGAGAAGTTTGTGAGTGACAATGCCTTGGGAGCCAGTGAGTTTCTTACCTTCACTCACAA 390
|| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||
Sbjct 321 GGTGAAGTTTGTGAGGGACAATGCCTTGGGAGACAATGAGTTTCTTACCTTCACTCACAA 380
Query 391 AGGGAATATGCGTTTTACAGTGAACATCTTCATGCAAGATGGCAAGGAGATGCTACAGCC 450
||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 381 AGGAAAAATGCGTTTTACAGTGAACATCTTCAAGCAAGATGGCAAGGAGATGCTTCAGCC 440
Query 451 TCCACAATCCATGTCCTTCATGGCTTCTTCTA-G-G-C--CAC-CTAAAAGAGAACAAGG 504
||||||||||||| ||| |||||||||||||| | | | | | |||||| |||||||||
Sbjct 441 TCCACAATCCATGGCCTCCATGGCTTCTTCTAGGCGCCGGCGCACTAAAACAGAACAAGG 500
Query 505 AATACCTTCTCTTGCCACGACAATAGCAGCTGAATCTAATGGAGGAGGGAACTACAAAAG 564
|||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 501 AATATCTTATCTTGCCACGACAATAACAGCTGAATCTAATGGAGGAGAAAACTACACAAG 560
Query 565 GAAGCTCAACTTTGAGAAGAAGAAAGCTGAGGAATCTCACAATTCCAAGAGGACCGATAA 624
||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| ||
Sbjct 561 GAAGCTCAACTTTGAGAAGAAGAAAGCTGCGGAATCCCAAAATTCCAAGAGGACCGAGAA 620
Query 625 AGTCTTTAGTGTCCAG-AGAGAATCTGCAGGTGCCTCTTCATCTTCTGTTGCAGAATTCT 683
|||||||||||||| | || || ||||||||||||||||||||||||||||||||||||
Sbjct 621 AGTCTTTAGTGTCC-GAAGGGATTCTGCAGGTGCCTCTTCATCTTCTGTTGCAGAATTCA 679
Query 684 CCATGTTTATCAAAAAATCATACCTCATCTACATGTGGTTCCCGAAATCTGTTCAAAGTA 743
||| || ||||| ||||||||||| |||| |||| || |||| ||||||||||||||||
Sbjct 680 CCACCTTCATCAAGAAATCATACCTTATCTTCATGAGGATCCCCAAATCTGTTCAAAGTA 739
Query 744 TTCATATGCCGAAGCAGAGAACGATTTTCAAGATACATCACCCAAATATGAAGAAGTCAT 803
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 740 TTCATATGCCGATGCAGAGAACGATTTTCAAGATACATCTCCCAAATATGAAGAAGTCAT 799
Query 804 GGAATGTGGTTTACGTGGTGTCAGGGACGAAAT-CAAGCTTCTCTGCTGGATGGAAAGGT 862
|||||||||||||| ||||| ||| | | | |||||||||||| |||||||||| ||
Sbjct 800 GGAATGTGGTTTACTTGGTGGCAGATA-GGGGTGCAAGCTTCTCTGGTGGATGGAAACGT 858
Query 863 TTGGCTCAAGAATATCCTCTAGCAGTTGGAGACACTTGCAAGTTTTCATTCATCAAACAA 922
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 859 TTGGCTCAAGAGTATCCTGTAGCAGTTGGAGACACTTGCAAGTTTTCATTCATCAAACAA 918
Query 923 CACGAGCTGATTCTCTTTGTCTCAAAACCCTAAGAGGAGACTCACTAGTGAATAGTGATG 982
||||||||||||||||||||||||||||||||||||||| || ||| | ||||||||
Sbjct 919 CACGAGCTGATTCTCTTTGTCTCAAAACCCTAAGAGGAG-CT-ACTC---ACTAGTGATG 973
Query 983 ATGAATGTGAAGGTGTCTACTGAGTAAAAGACTGTTTATCAGTGTTGTCTTAAGTTTTAG 1042
||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||
Sbjct 974 ATGGATGTGAAGGTGTCAACTGAGAAAAAGACTGTTTATCAGTGTTGTCTTAACTTTTAG 1033
Query 1043 TTTTATGTTATGACTTAGTTCGGTTTTAAGTTCAGAATGTCTATCGGATGGATCTATGTA 1102
|||||||||||||||||||||||||| || |||||||||||||| || |||| ||||||
Sbjct 1034 TTTTATGTTATGACTTAGTTCGGTTTAAA-TTCAGAATGTCTATGGGGCGGATATATGTA 1092
Query 1103 GCTTGATATGATTGGGACCAATTTTAATATGTTGT 1137
|||||||||| |||| |||||||||||||||||||
Sbjct 1093 GCTTGATATGTTTGG-ACCAATTTTAATATGTTGT 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42850158708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5