BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35350.1
Length=2673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482498 jgi|Araly1|482498|fgenesh2_kg.4__1558__AT2G35350.1 3954 0.0
> Ahg482498 jgi|Araly1|482498|fgenesh2_kg.4__1558__AT2G35350.1
Length=2610
Score = 3954 bits (2141), Expect = 0.0
Identities = 2490/2652 (94%), Gaps = 49/2652 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGTGGATTCTCCTCCTTGTTACCTTGCTTCAATCAAGGTCACCGTAACCGCCGT 60
||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGGGAAGTGGATTCTCCTCCGTCTTACCTTGCTTCAATCAAGGCCACCGTAACCGCCGT 60
Query 61 CGTCACTCCTCGGCGGCGAATCCCTCTCATTCCGATCTGATTGACTCTTTCCGTGAGCCG 120
|||||||| ||| |||||||||| |||||||||||| |||||| ||| || ||||||||
Sbjct 61 CGTCACTCATCGACGGCGAATCCGACTCATTCCGATCCGATTGAGTCTCTCTGTGAGCCG 120
Query 121 TTGGATGAGACTTTAGGCCATTCTTACTGTTACGTTCCTTCTTCTTCTAATCGCTTCATT 180
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 121 TTGGATGAGACTTTAGGCCATTCTTACTGTTACGTT-C--CTTCTTCTAATCGCTTCATT 177
Query 181 TCTCCTTTTCCTTCCGATCGATTCGTTTCTCCTACTGCTTCTTTCCGGTTATCTCCTCCG 240
|||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 178 TCTCCTTTTCCTTCTGATCGATTCGTTTCTCCTTCTGGTTCTTTCCGGTTATCTCCTCCG 237
Query 241 CATGAACCGGGTCGAATCCGAGGTTCCGGATCATCCGAGCAGCTTCACACCGGGTTTAGA 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CATGAACCGGGTCGGATCCGAGGTTCCGGATCATCCGAGCAGCTTCACACCGGGTTTAGA 297
Query 301 GCGATTTCTGGTGCTTCTGTTAGCGCCAACACTTCCAATTCCAAAACTGTCCTTCAGCTT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 298 GCGATTTCTGGTGCTTCTGTTAGCGCCAACACTTCGAATTCCAAAACTGTCCTCCAGCTT 357
Query 361 GAAGATATTTACGACGATGCCACTGAGAGCAGTTTCGGCGGCGGCGTTAGGAGGAGTGTG 420
|||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||
Sbjct 358 GAAGATATTTACGACGATGCCACTGAGAGCAGCTTCGGCGGCGGCGTTCGGAGCAGTGTT 417
Query 421 GTGAATGCCAATGGCTTTGAAGGAACGTCGTCGTTTAGTGCTCTTCCGCTTCAGCCCGGT 480
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||
Sbjct 418 GTGAATGCCAATGGCTTTGAAGGTACGTCGTCGTTTAGTGCTCTCCCGCTTCAACCTGGT 477
Query 481 CCGGATCGCTCGGGTCTCTTCATGTCCGGTCCGATCGAAAGAGGAGCCACTTCAGGTCCG 540
|||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 478 CCGGATCGGTCGGGTCTCTTCATGTCGGGTCCTATCGAAAGAGGAGCCACTTCAGGTCCC 537
Query 541 TTAGACCCGCCGGCCGGAGAGATTTCGAGATCTAATTCCGCCGGTGTGCATTTCTCAGCG 600
||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||
Sbjct 538 TTAGACCCGTCGGCCGGAGCGATTTCGAGATCTAATTCCGCCGGCGTGCATTTCTCGGCG 597
Query 601 CCGCTCGGTGGTGTTTACTCgaagaagagacggaaaaagaagaagaagaGCCTTTCCTGG 660
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 598 CCGCTCGGTGGTGTATACTCGAAGAAGAGACGGAGAAAGAAGAAGAAGAGCCTTTCCTGG 657
Query 661 CATCCGATTTTCGGCGGGGAGAAGAAGCAACGGCCATGGGTTCTTCCGGTGTCGAATTTC 720
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 658 CATCCGATTTTCGGTGGGGAAAAGAAGCAACGGCCATGGGTTCTTCCGGTGTCGAATTTC 717
Query 721 GTCGTCGGTGCTAAGAAGGAGAACATTGTGAGACCCGACGTTGAAGCTATGGCAGCATCT 780
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 718 GTCGTCGGTGCTAAGAAGGAGAACATTGTGAGACCCGACGTCGAAGCCATGGCAGCATCT 777
Query 781 TCCGGAGAGAACGATTTGCAGTGGGCATTGGGGAAGGCAGGAGAGGATAGAGTGCAATTA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 TCCGGAGAGAACGATTTGCAGTGGGCATTGGGGAAGGCAGGAGAGGACAGAGTGCAATTA 837
Query 841 GCTGTTTTTGAGAAGCAAGGATGGCTCTTT-GCTGGAATCTACGACGGTTTCAATGGACC 899
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||
Sbjct 838 GCTGTTTTTGAGAAGCAAGGATGGCT-TTTCGCTGGAATCTACGACGGTTTCAACGGACC 896
Query 900 CGACGCGCCGGAGTTTCTGATGGCTAATCTCTACCGTGCTGTTCATAGTGAGTTACAGGG 959
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 897 CGACGCGCCGGAGTTTTTGATGGCTAATCTCTACCGTGCTGTTCACAGTGAGTTACAAGG 956
Query 960 TTTGTTCTGGGAATTGGAGGAAGAAGATGATAATCCAACAGATATTAGCACTAGA-GAGT 1018
|||||||||||||||||| |||||||||||||||||||| | || | ||| | ||||
Sbjct 957 TTTGTTCTGGGAATTGGATGAAGAAGATGATAATCCAAC-G--GTT--C-CTA-ATGAGT 1009
Query 1019 TAGAGCAACAAGGTGAATTTGAGGAC-CATGTAAACGAAATGGCAAGTTCGAGCTGTCCA 1077
||||||||| |||| || |||||| | || || ||||||||||||||||||||||||||
Sbjct 1010 TAGAGCAACGAGGTAAAGTTGAGG-CTCAAGTCGACGAAATGGCAAGTTCGAGCTGTCCA 1068
Query 1078 GCAACAGAGAAGGAAGAAGAAGAGATGGGAAAGAGATTGA---CGTCTTCATTAGAGGTG 1134
|||||||| ||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 1069 GCAACAGACAAGGAAGAAGACGAGATGGGAAAGAGATTGACCTCTTCTTCATTAGAGGTG 1128
Query 1135 GTTGAAGTCAAGGAGAGGAAACGGCTATGGGAGCTTCTGGCAGAGGCTCAAGCAGAAGAT 1194
|| ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 1129 GTGGAAGTCAAGGAGAGGAAACGGCTATGGGAGCTTCTTGCAGAGGCGCAAGCAGAGGAT 1188
Query 1195 GCGTTAGATCTTTCAGGTTCTGATAGGTTTGCATTTTCGGTGGATGATGCTATCGGTGCA 1254
||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1189 GCGTTAGATCTATCAGGTTCTGATAGGTTTGCATTCTCAGTGGATGATGCTATCAGTGCA 1248
Query 1255 GGCAATGCTGTGTCTGTGGGAAGTAAGAGATGGTTGCTTTTGTCAAAATTGAAGCAGGGT 1314
|||||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1249 GGCAATGCCGCGTCTGTGGGAAGTAAAAGATGGTTGCTGTTGTCAAAATTGAAGCAGGGT 1308
Query 1315 TTATCTAAACAAGGAATTTCTGGGAGGAAGTTGTTCCCATGGAAGTCTGGTGTGGAGGAA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1309 TTATCTAAACAAGGAATTTCTGGGAGGAAGTTGTTCCCATGGAAGTCTGGTGTAGAGGAG 1368
Query 1375 AATGAAACGGAGGAGGTAGATAATGTTGGTGTGGAAGAAGGGGTTGATAAGAGAAGGAAG 1434
||||||| |||||||||||||||||||| || |||||| ||||||||||||| ||||||
Sbjct 1369 AATGAAAATGAGGAGGTAGATAATGTTGGAGTAGAAGAACGGGTTGATAAGAGGAGGAAG 1428
Query 1435 AGACGAAAGGCGGGTACCGTTGATCATGAGTTGGTTCTAAAGGCAATGTCAAATGGTCTT 1494
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1429 AGACGAAAGGCGGGTACGGTTGATCATGAGTTGGTTCTAAAGGCAATGTCAAATGGTCTT 1488
Query 1495 GAAGCCACAGAGCAAGCATTCCTAGAGATGACTGATAAGGTTCTCGAAACCAATCCTGAG 1554
|||||||||||||||||||| ||||| ||||||||||||||||| || |||||||| |||
Sbjct 1489 GAAGCCACAGAGCAAGCATTTCTAGAAATGACTGATAAGGTTCTTGACACCAATCCCGAG 1548
Query 1555 CTTGCATTGATGGGTTCGTGCTTACTGGTTGCACTGATGAGAGATGATGATGTGTATATA 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CTTGCATTGATGGGTTCGTGCTTACTGGTTGCACTGATGAGAGATGATGATGTGTATATA 1608
Query 1615 ATGAACATAGGGGATAGTAGGGCTCTTGTTGCACAATATCAGGTAGAAGAAACGGGTGAG 1674
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 1609 ATGAACATAGGGGATAGTAGGGCTCTTGTTGCACAATATCAGGTTGAAGAAACGGGTGCG 1668
Query 1675 AGTGTGGAGACAGCAGAAAGAGTAGAAGAAAGACGCAATGATTTAGACAGAGACGATGGA 1734
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 1669 AGTGTGGAGACATCAGAAAGAGTAGAAGAAAGACGCAATGATGTAGACAGAGACGTTGAA 1728
Query 1735 AACAAAGAGCCTTTGGTCGTGGATAGTAGCGATAGTACAGTGAACAACGAAGCTCCTTTG 1794
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1729 AACAAAGAGCCTTTGGTTGTGGATAGTAGCGATAGTACAGTGAACAACGAAGCTCCTCTG 1788
Query 1795 CCGCAAACGAAACTGGTTGCCCTGCAGCTAACAACAGATCACAGCACAAGCATCGAGGAT 1854
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1789 CCGCAAACGAAACTGGTTGCTCTGCAGCTAACAACAGATCACAGCACGAGCATCGAGGAT 1848
Query 1855 GAAGTAACAAGAATAAAAAACGAGCACCCCGATGACAACCATTGCATAGTGAATGACAGG 1914
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1849 GAAGTAACAAGAATAAAAAACGAGCACCCGGATGACAACCATTGCATAGTGAATGACAGG 1908
Query 1915 GTGAAAGGACGGCTTAAGGTGACCAGAGCGTTTGGAGCGGGATTCTTAAAGCAGCCAAAA 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 GTGAAAGGACGGCTTAAGGTGACCAGAGCGTTTGGAGCGGGATTCTTAAAGCAGCCAAAA 1968
Query 1975 TTGAACGATGCTTTGCTGGAAATGTTTCGAAACGAATACATTGGTACGGATCCATACATA 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TTGAACGATGCTTTGCTGGAAATGTTTCGAAACGAATACATTGGTACGGATCCATACATA 2028
Query 2035 TCATGCACACCTTCCCTTCGTCACTACCGGCTAACAGAGAATGATCAGTTTATGGTTCTC 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 TCATGCACACCTTCCCTTCGTCACTACCGGCTAACAGAGAATGATCAGTTTATGGTTCTC 2088
Query 2095 TCATCGGATGGATTGTACCAATACTTGAGCAATGTGGAAGTTGTTTCTCTTGCCATGGAG 2154
||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 2089 TCATCTGATGGATTGTACCAATACTTGAGCAATGGGGAAGTTGTTGCTCTTGCCATGGAG 2148
Query 2155 AAGTTTCCAGATGGAGACCCTGCTCAACATGTTATACAGGAACTTCTAGTCCGTGCAGCC 2214
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2149 AAGTTTCCAGATGGAGATCCTGCTCAACATGTTATACAGGAACTTTTAGTCCGTGCAGCC 2208
Query 2215 AAGAAAGCTGGAATGGATTTTCATGAACTTCTCGATATCCCGCAAGGAGATAGAAGAAAG 2274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2209 AAGAAAGCTGGAATGGATTTTCATGAACTTCTCGATATCCCGCAAGGAGATAGAAGAAAG 2268
Query 2275 TATCACGATGATTGCACTGTATTAGTGATAGCACTTGGAGGAAGTAGGATATGGAAGTCA 2334
|||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 2269 TATCACGACGATTGCACTGTATTAGTGATAGCACTTGGAGGAAGCAGGATCTGGAAGTCA 2328
Query 2335 TCAGGAAAGTATCTTTGAGACCATAAACCACACAGTTCGATGAAGCCAACAGATAAAAAA 2394
||||||||||| ||||||| ||| ||| | | | | | || | | ||
Sbjct 2329 TCAGGAAAGTACCTTTGAGGCCA-AAA--A----G--C-A-----C-AA-A-A-AA---- 2365
Query 2395 CGCTCCTTATAGATTAACTTCTTTTGACTTAATGCAGCATAAGATCAAAAGGGTGCCAAG 2454
| |||||||||||||| | |||||||||||||||||||| || |||| |||||||||||
Sbjct 2366 CTCTCCTTATAGATTAGCCTCTTTTGACTTAATGCAGCA-AA--TCAAGAGGGTGCCAAG 2422
Query 2455 TTTTCTTGCTTTTTGTTTCCT-TAGGAATTTTGGGTCAGATTAGGTGGGGGTGTTTTATA 2513
||||||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 2423 TTTTCTTGCTTTTAGTTTC-TGTAGGAATTTTGGGTCAGATTAGGTGGGGG-GTTTTATA 2480
Query 2514 TTTTGTTTCTTTGTTGAATAGGGTAGGGATTGGAATAGCGGTGAAACCaaaaacaaaaaa 2573
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 2481 TTTTGTTTCTTTGTTGAATAGGGCAGGGATTGGAATAGAGGTGAAACCAAAAAAAAAAAA 2540
Query 2574 GAGGATATGTAATTTgggggggTGGGGACAAAAGGGTAATATATAGAACATTTTCCTCCT 2633
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2541 AAGGATATGTAATTTGGGGG--TGGGGACAAAAGGGTAATACATAGAACATTTTCCTCCT 2598
Query 2634 GGGaaaaaaaaa 2645
||| ||||||||
Sbjct 2599 GGGGAAAAAAAA 2610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100824878515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5