BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35360.1
Length=989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482499 jgi|Araly1|482499|fgenesh2_kg.4__1559__AT2G35360.1 1356 0.0
> Ahg482499 jgi|Araly1|482499|fgenesh2_kg.4__1559__AT2G35360.1
Length=923
Score = 1356 bits (734), Expect = 0.0
Identities = 868/929 (93%), Gaps = 24/929 (3%)
Strand=Plus/Plus
Query 49 ATGATGAATTCAACCGAAGAGCTGAGCTCAGATTCAACCAACAATGGCACCGTCGAGATC 108
||| ||||||||| ||||||| ||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTGAATTCAATCGAAGAGATGAGCTCTGATTCGACCAACAATGGCACCGTCGAGATC 60
Query 109 ACGTACAAAACCATCGGCCCAGCTCGGCCGTCTCAAATTCGAGTGGCGTCTCATATCAAA 168
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ACGTACAAAACCATCGGCCCAGCTCGGCCGTCTCAAATTCGAGTGGCGTCTCATGTCAAA 120
Query 169 ATTCGTGATTTGAGAAATGCAATTGCGGAAAAGGGTAAATTTCCCGTTTCAACTTTAAGG 228
|||||||| |||||||||||||||||||||||||||||||||| || |||| ||| |||
Sbjct 121 GTTCGTGATCTGAGAAATGCAATTGCGGAAAAGGGTAAATTTCCTGTCTCAAATTTGAGG 180
Query 229 ATGATTCTTCGTGGAAAGGCATTGCAAGACGAAGAAGATGGAGATGATTTATACGTTACG 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ATGATTCTTCGTGGAAAGGCATTGCAAGACGAAGAAGATGGAGATGATTTATACGTTAAG 240
Query 289 CTCAAGGACCAAGATTCCTTTATTGTTGCTGTAATACCAAATCCACCAGCTGGAGTTGAG 348
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||
Sbjct 241 CTCAAGGACCAAGATTCCTTGATCGTTGCTGTAATACCAAAGCCACCAGCTGGAGCTGAG 300
Query 349 TCATTtga---tgatgatgatgatgatgatTTGAAGTTTAAACTCCCACCGTCAGCAAGC 405
| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ACCTTTGAGGATGATGATGATGATGATGATTTGAAGTTTAAACTCCCACCATCAGCAAGC 360
Query 406 CGGTGGAAGAGGAAGTTATACTACTTTCTGCGTAACAAGTTGAAGCTGCCAGATATCATT 465
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CGGTGGAAGAGGAAGTTCTACTACTTTCTGCGTAACAAGTTGAAGCTTCCAGATATCATT 420
Query 466 CTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTATCA-CCTTGTGGTTTAT 524
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 421 CTTATGGGACTTTTCTCTTTAAGTCTAAAGATGTGGGTTATTATCATCCT-GTGGTTTAT 479
Query 525 CTTGGCGCCTATTGCACATCGGTGGGATCTGGGCCCTATATTTATACTAGGGACTGGATT 584
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 480 CTTGGCGCCTATTGCACATCGGTGGGAACTGGGCCCTATATTTATACTAGGGACTGGCTT 539
Query 585 TTCAATCATCTTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTTAGTGCATATTCCAT 644
||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 540 TTCAATCATATTGCTCAATCTTGGTAAACGACAGCCTGGTGATGTCAGCGCATATTCCAT 599
Query 645 ATTCAACGAGGATTTTAGAGAGCTTCCAGGTACATATAATGCAGATCGTATAGACCGGGA 704
|||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||
Sbjct 600 ATTCAACGAGGATTTTAGAGAGCTCCCGGGTACATATAATGCAGATCGTATAGATCGGGA 659
Query 705 CATACGAGCAGGCCAGATGTAATGCATATTTGCATCA--AA-ACCATTGCTTGGTAAGA- 760
|||||||||||||||||| ||||||| | |||||||| || |||||||||||||| ||
Sbjct 660 CATACGAGCAGGCCAGATATAATGCAGAATTGCATCATCAACACCATTGCTTGGTA-GAA 718
Query 761 TTCACACAACAGACGAAAAA-TACTTA------ATACCCAATGTGCAACCAAGAGATCAG 813
||||||||||||| |||||| |||||| |||||||||| |||||||| |||||||
Sbjct 719 TTCACACAACAGAAGAAAAAATACTTATCGGTTATACCCAATGAGCAACCAAAAGATCAG 778
Query 814 TTTTTTGTCCTGTCTGATT--GA-GACACAACACAAAGCATGACAGTACTTGAGACCAAA 870
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 779 TTTTTTGTCCTGTCTGATTTAGACGACACAACACAAAGCATGACAGTACTTGAGACCAAA 838
Query 871 ATTCCTATTGATGTACATGATCTAGCTAGTCTTTTAAATTCCATGATCAATGGTCCGTGT 930
||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct 839 ATTCCTATTGATGTACATGATCTAG-T---CTTTTAGATTCCATGATCAATGGTCCGTGT 894
Query 931 TGTACTCGAATATTGAGATTCCCTTATAT 959
|||||||||||||||||||||||||||||
Sbjct 895 TGTACTCGAATATTGAGATTCCCTTATAT 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36750491988
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5