BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35390.2
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901385 jgi|Araly1|901385|Al_scaffold_0004_2035 1989 0.0
Ahg473426 jgi|Araly1|473426|fgenesh2_kg.1__3380__AT1G32380.1 1229 0.0
Ahg931184 jgi|Araly1|931184|scaffold_303641.1 82.4 1e-14
> Ahg901385 jgi|Araly1|901385|Al_scaffold_0004_2035
Length=1212
Score = 1989 bits (1077), Expect = 0.0
Identities = 1167/1212 (96%), Gaps = 0/1212 (0%)
Strand=Plus/Plus
Query 242 ATGGCGTCTCTGGGTCTATCCTTTCCTCCCGCCGCAAAAACGCCGACGTATCTAGCCTCT 301
||||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 ATGGCGTCTCTGGGTCTGTCGTTTCCTCCCGCCGCCAAAACGCCGTCGTATCTAGCCTCT 60
Query 302 TCGTCTTCAACTTTCTTCTCTAACTCTTCTCTATCCGTCAGAACCTCTCAGTTTCGCTCC 361
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCGTCTTCAACTTTCTTCTCTAACTCTTCTCTATCCGTCAGAACCTCTCAGTATCGCTCC 120
Query 362 CGAAACTCTGTCTTCGCTTGTGTTAAATGTGATATGCCGGAGTCATTGAATGTGGGAAAC 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CGAAACTCTGTCTTCGCTTCTGTTAAATGTGATATGCCGGAGTCATTGAATGTGGGAAAC 180
Query 422 GGGAATCCAAGTATCCCAATTATTAATGAGAGGACACTTCCAAAGTTCTTGGAATCTGCT 481
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGAATCCGAGTATCCCAATTATTAATGAGAGGACACTTCCAAAGTTCTTGGAATCTGCT 240
Query 482 CGTATGGAGAAATCAGTCAATAGAACCAATACAAGGTTGAAGTTGTTCTCTGGTACTGCA 541
|| |||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||
Sbjct 241 CGAATGGAGAAATCAGTCAGTAGAACCAGTACCAGGTTGAAGTTGTTCTCTGGTACTGCA 300
Query 542 AATCCAGCACTTGCTCAGGAAATTGCTTGGTATATGGGCTTGGATCTTGGCAAGGTTAAT 601
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 301 AATCCAGCACTTGCTCAGGAAATTGCTTGGTATATGGGCTTGGAGCTTGGGAAGGTTAAT 360
Query 602 ATTAAGAGGTTTGCTGATGGAGAGATCTATGTTCAGCTACAAGAGAGCGTTAGGGGATGT 661
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTAAGAGATTTGCTGATGGAGAGATCTATGTTCAGCTACAAGAGAGCGTTAGGGGATGC 420
Query 662 GACGTCTATTTGGTGCAGCCTACTTGCACTCCCACTAATGAGAATCTCATGGAGCTTTTG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GACGTCTATTTGGTGCAGCCTACTTGCACTCCCACTAATGAGAATCTCATGGAGCTTTTG 480
Query 722 ATTATGGTAGATGCTTGCCGAAGAGCATCAGCTAAGAAAGTTACAGCTGTGATTCCGTAT 781
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 481 ATTATGGTAGATGCTTGCCGAAGAGCTTCAGCTAAGAAAGTAACAGCTGTTATTCCGTAT 540
Query 782 TTTGGATATGCAAGAGCTGACAGGAAGACACAAGGGCGTGAATCCATTGCTGCCAAATTG 841
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTTGGATATGCAAGAGCTGATAGGAAGACACAAGGGCGTGAATCCATTGCTGCCAAATTG 600
Query 842 GTTGCAAATCTTATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGATCTTCATTCA 901
||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 601 GTTGCTAATCTGATCACTGAAGCCGGTGCAGATCGAGTTCTTGCATGTGATCTTCATTCT 660
Query 902 GGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGCCGGTGATA 961
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGACAGTCCATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAGCCGGTGATA 720
Query 962 CTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTGGTAGTGGTTTCTCCTGAT 1021
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 721 CTTGATTATCTTGCTAGCAAGTCAATTTCCTCAGAGGACTTGGTCGTGGTTTCTCCTGAT 780
Query 1022 GTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCACCACTTGCC 1081
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 781 GTTGGTGGAGTAGCCAGGGCACGTGCTTTTGCAAAGAAATTATCAGATGCGCCACTTGCC 840
Query 1082 ATTGTCGATAAAAGGCGTTCTGGACACAATGTTGCTGAGGTCATGAACCTAATTGGTGAT 1141
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTGTCGATAAAAGGCGTTCAGGACACAATGTTGCTGAGGTCATGAACCTAATTGGTGAT 900
Query 1142 GTAAGAGGGAAGGTGGCAATAATGGTGGATGATATGATTGATACTGCTGGAACCATTGTA 1201
|||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 GTAAAAGGGAAGGTGGCAGTAATGGTGGATGATATGATTGATACCGCTGGAACCATTGTA 960
Query 1202 AAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTCGGGAGGTATATGCGTGCTGCACACAC 1261
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 961 AAAGGAGCAGCTTTGTTACACCAGGAAGGTGCTAGGGAGGTCTATGCGTGCTGCACACAT 1020
Query 1262 GCTGTTTTCAGCCCGCCAGCGATAGAGCGATTATCAGGGGGTTTGCTGCAAGAAGTGATA 1321
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1021 GCTGTTTTCAGCCCGCCAGCGATAGAACGATTATCAGGGGGTTTGCTTCAAGAAGTGATA 1080
Query 1322 GTGACAAACACATTACCTGTAGCAGAGAAGAATTACTTCCCGCAGTTAACAATATTATCA 1381
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 GTGACAAACACATTACCAGTAGCAGAAAAGAATTACTTCCCGCAGTTAACAATATTATCG 1140
Query 1382 GTGGCTAATCTCCTGGGTGAGACCATTTGGCGTGTGCATGATGATAGTTCCGTCAGTAGC 1441
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 GTGGCTAATCTTCTGGGTGAGACCATTTGGCGTGTCCATGATGATAGTTCCGTCAGTAGC 1200
Query 1442 ATTTTCCTTTGA 1453
||||||||||||
Sbjct 1201 ATTTTCCTTTGA 1212
> Ahg473426 jgi|Araly1|473426|fgenesh2_kg.1__3380__AT1G32380.1
Length=1593
Score = 1229 bits (665), Expect = 0.0
Identities = 921/1045 (88%), Gaps = 16/1045 (2%)
Strand=Plus/Plus
Query 418 AAACGGGAATC-CAAGTATCCCAATTATTAATGAGAGGACACTTCCAAAGTTCTTGGAAT 476
||||||||| | | | || |||||||||||||||| |||| ||||||||||||| || |
Sbjct 326 AAACGGGAA-CGCTCGGATTCCAATTATTAATGAGACGACAATTCCAAAGTTCTTTGATT 384
Query 477 CTGCTC-GTATGGAGAAATCAGTCAATAGAACCAATA-CAAGGTTGAAGTTGTTCTCTGG 534
|| | | || |||||||||| || | ||||| ||||| |||| || ||||||||||||||
Sbjct 385 CTTCACGGT-TGGAGAAATCGGTTAGTAGAAACAATACCAAGCTT-AAGTTGTTCTCTGG 442
Query 535 TACTGCAAATCCAGCACT-TGCTCAGGAAATTGCTTGGTATATGGGCTTGGATCTTGGCA 593
||||||||||||||| || | ||||||||||||||||||||||||||||||| ||||| |
Sbjct 443 TACTGCAAATCCAGCTCTAT-CTCAGGAAATTGCTTGGTATATGGGCTTGGAGCTTGGGA 501
Query 594 AGGTTAATATTAAGAGGTTTGCTGATGGAGAGATCTATGTTCAGCT-ACAAGAGAGCGTT 652
|||||| || ||||| ||||||||||||||||| || |||||||| | ||||||| |||
Sbjct 502 AGGTTAGCATAAAGAGATTTGCTGATGGAGAGATTTACGTTCAGCTGA-AAGAGAGTGTT 560
Query 653 AGGGGATGTGACGTCTATTTGGTGCAGCCTACTTGCACTCCCACTAATGAGAATCTCATG 712
|| || || || |||| |||||||||||||||||||||||| || ||||||||||| |||
Sbjct 561 AGAGGTTGCGATGTCTTTTTGGTGCAGCCTACTTGCACTCCAACAAATGAGAATCTTATG 620
Query 713 GAGCTTTTGATTATGGTAGATGCTTGCCGAAGAGCATCAGCTAAGAAAGTTACAGCTGTG 772
||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 621 GAGCTTTTGATCATGGTGGATGCTTGCCGAAGAGCATCGGCTAAGAAAGTAACAGCCGTG 680
Query 773 ATTCCGTATTTTGGATATGCAAGAGCTGACAGGAAGACACAAGGGCGTGAATCCATTGCT 832
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 681 ATTCCGTATTTTGGATACGCAAGAGCTGATAGAAAGACACAAGGGCGTGAATCCATTGCT 740
Query 833 GCCAAATTGGTTGCAAATCTTATCACTGAAGCTGGTGCAGATCGAGTTCTTGCTTGTGAT 892
||||||||||| ||||| ||||| || ||||| ||||||||| | ||||| |||||||||
Sbjct 741 GCCAAATTGGTAGCAAACCTTATAACAGAAGCCGGTGCAGATAGGGTTCTGGCTTGTGAT 800
Query 893 CTTCATTCAGGACAGTCGATGGGTTATTTTGACATTCCAGTCGACCATGTGTACTGCCAG 952
|||||||||||||| || ||||||||||||||||| ||||| || ||||| || ||||||
Sbjct 801 CTTCATTCAGGACAATCCATGGGTTATTTTGACATACCAGTGGATCATGTCTATTGCCAG 860
Query 953 CCGGTGATACTTGATTATCTTGCTAGCAAGTCAATTCCCTCAGAGGATTTGGTAGTGGTT 1012
|| ||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 861 CCTGTGATTCTTGATTATCTTGCTAGCAAGTCAATTTCCTCTGAGGATTTGGTAGTGGTT 920
Query 1013 TCTCCTGATGTTGGTGGAGTAGCCAGGGCCCGCGCTTTTGCAAAGAAATTATCAGATGCA 1072
||||||||||||||||||||||||||||| || || ||||| ||||||||||| |||||
Sbjct 921 TCTCCTGATGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCG 980
Query 1073 CCACTTGCCATTGTCGATAAAAGGCGTT-CTGGACACAATGTTGCTGAGGTCATGAACCT 1131
||||| ||||||||||||||||||||| | || || |||||||||||||||||||||||
Sbjct 981 CCACTCGCCATTGTCGATAAAAGGCGTCAC-GGCCATAATGTTGCTGAGGTCATGAACCT 1039
Query 1132 AATTGGTGATGT-AAGAGGGAAGGTGGCAATAATGGTGGATGATATGATTGATACTGCTG 1190
||| |||||||| || |||||| |||||| | ||||||||||| ||||||||||| ||||
Sbjct 1040 AATCGGTGATGTTAA-AGGGAAAGTGGCAGTTATGGTGGATGACATGATTGATACCGCTG 1098
Query 1191 GAACCATTGTAAAAGGAGCAGCT-TTGTTACACCAGGAAGGTGCTCGGGAGGTATATGCG 1249
|||||||||| |||||||||||| || |||||| |||| ||||| || ||||| || ||
Sbjct 1099 GAACCATTGTGAAAGGAGCAGCTCTT-TTACACGAGGAGGGTGCACGTGAGGTTTACGCT 1157
Query 1250 TGCTGCACACACGCTGTTTTCAGCCCGCCAGCGATAGAGCGATTATCAGGGGGTTTGCTG 1309
||||| ||||| || |||||||| ||||| ||||||||||| |||||| | |||||| ||
Sbjct 1158 TGCTGTACACATGCGGTTTTCAGTCCGCCTGCGATAGAGCGGTTATCAAGTGGTTTGTTG 1217
Query 1310 CAAGAAGTGATAGTGACAAACACATTACCTGTAGCAGAGAAGAATTACTTCCCGCAGTTA 1369
||||||||||||||||| || || ||||| |||| ||||||||||||||||||||||||
Sbjct 1218 CAAGAAGTGATAGTGACGAATACTTTACCAGTAGTGGAGAAGAATTACTTCCCGCAGTTA 1277
Query 1370 ACAATATTATCAGTGGCTAATCTCCTGGGTGAGACCATTTGGCGTGTGCATGATGATAGT 1429
|| || ||||| |||||||| || |||||||||||||| |||||||| |||||||||||
Sbjct 1278 ACGATTTTATCGGTGGCTAACCTTCTGGGTGAGACCATATGGCGTGTCCATGATGATAGC 1337
Query 1430 TCCGTCAGTAGCATTTTCCTTTGAC 1454
||||| |||||||||||||||||||
Sbjct 1338 TCCGTTAGTAGCATTTTCCTTTGAC 1362
> Ahg931184 jgi|Araly1|931184|scaffold_303641.1
Length=549
Score = 82.4 bits (44), Expect = 1e-14
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 702 AGAATCTCATGGAGCTTTTGATTATGGTAGATGCTTGCCGAAGA 745
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 AGAATCTCATGGAGCTTTTGATTATGGTAGATGCTTGCCGAAGA 77
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5