BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35410.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482506 jgi|Araly1|482506|fgenesh2_kg.4__1566__AT2G35410.1 1670 0.0
Ahg482507 jgi|Araly1|482507|fgenesh2_kg.4__1567__AT2G35420.1 62.1 9e-09
> Ahg482506 jgi|Araly1|482506|fgenesh2_kg.4__1566__AT2G35410.1
Length=1103
Score = 1670 bits (904), Expect = 0.0
Identities = 1040/1106 (94%), Gaps = 7/1106 (1%)
Strand=Plus/Plus
Query 3 GTGCCAAAGCTAACAATGGCGGTTTTGGAAGcttctctctccattttctccttctcttct 62
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1 GTGCCAAAGCTAACAATGGCTGTTTTGGAAGCTGCTCTCTCCATTTTCTCCTTCTCTTCT 60
Query 63 tcttcttcctcttcaaaaccttatctcttttctaaacgctcttcttccttaaaacttACT 122
|||||||| || ||||||||||||||||||| |||||| ||||||||||| |||| ||||
Sbjct 61 TCTTCTTCTTCCTCAAAACCTTATCTCTTTTGTAAACGGTCTTCTTCCTTCAAACCTACT 120
Query 123 GCCCTTAGTCTTCGAATTCCCAGCAATCTCTCTCCCGTCTTCTCTCTACGTTCCGGCAGC 182
|| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 121 GCTCTGAGTCTTCGACTTCCCAGTAATCTCTCTCCCGTCTTCTCTCTACGTTCCGGCGGC 180
Query 183 GATAACTCACGGCGGCTCGTCTCCGTACTCTGTTCCGTCGCGGAGAAAGAAACATCGGCG 242
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 181 TATAACTCGCGGCGGCTCGTCTCCGTACTATGTTCCGTCGCGGAGAAAGAAACATCAGCG 240
Query 243 GATGAAGAAACGTCGCAGGAGGAGAAGACTGAAGAAACCCAGAATTCAAATCTGAAAAGG 302
|| ||||||||||||||||||||||| ||| ||||||||||||| ||||| |||||||||
Sbjct 241 GAGGAAGAAACGTCGCAGGAGGAGAATACTCAAGAAACCCAGAAATCAAACCTGAAAAGG 300
Query 303 AAGCTTTTTGTATTCAATCTTCCTTGGTCTATGAGTGTAAATGACATTTCCGAGCTCTTT 362
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 301 AAGCTATTTGTATTCAATCTTCCTTGGTCTATGAGTGTAAATGACATCTCGGAGCTCTTT 360
Query 363 GGACAATGTGGGACTGTGAACAATGTCGAGATTATAAGGCAAAAAGATGGAAAGAACCGA 422
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 361 GGACAATGCGGGACTGTGAACAATGTCGAGATTATAAGGCAAAAAGATGGGAAGAACCGA 420
Query 423 GGATTTGCTTTTGTAACTATGGCTTCTGGAGAAGAAGCTCAAGCAGCTATTGATAAGTTC 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 GGATTTGCTTTTGTAACTATGGCTTCTGGAGAAGAAGCTCAAGCTGCTATTGATAAGTTC 480
Query 483 GATACTTTTCAAGTGTCAGGGAGGATCATTAGCGTAAGCTTTGCAAGAAGGTTCAAGAAG 542
||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 481 GATACTTCTCAAGTGTCAGGGAGGATCATAAGCGTAAACTTTGCAAGAAGGTTCAAGAAG 540
Query 543 CCTACTCCGAAATCACCGAACGATCTTCCTTCTCCTGCCCCTGGAGACACTCGTCACAAA 602
|||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 541 CCTACTCCGAAACCACCCAACGATCTTCCTTCTCCTCCCCCTGGAGACACTCGTCACAAA 600
Query 603 CTCTACGTATCTAATCTCGCTTGGAAAGCAAGATCAACACATCTCCGAGAGCTTTTCACT 662
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 601 CTCTACGTATCTAATCTCGCTTGGAAAGCAAGGTCAACCCATCTCCGTGAGCTTTTCACT 660
Query 663 GCTGCAGATTTCAACCCGGTCTCAGCTCGGGTTGTTTTCGCTGACCCCGAAGGTAGATCT 722
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 661 GCTGCTGATTTCAACCCGGTCTCAGCTCGGGTTGTTTTCGCTGACCCTGAAGGAAGATCT 720
Query 723 TCTGGCTATGGCTTTGTCTCATTTGCTACTAGAGAAGAAGCTGAGAATGCAATCACAAAA 782
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 721 TCCGGCTATGGCTTTGTCTCATTTGCTACTAGAGAAGAAGCTGAGGATGCAATCACCAAA 780
Query 783 CTCAATGGGAAGGAGATAATGGGTAGACCTATCACTCTAAAGTTTAGTCT-GAGAAGCGC 841
||| ||||||||||||||||||| |||||||||| ||| |||||||| || |||||||||
Sbjct 781 CTCGATGGGAAGGAGATAATGGGCAGACCTATCATTCTCAAGTTTAG-CTTGAGAAGCGC 839
Query 842 CAGTGAATCTGAAGATGGTGACAGTGTAGAAG-CTAACAACGCTTCTGAAGATGGAGACA 900
|||||||||||||||| |||||| |||||||| | |||||| ||||||||||||| ||||
Sbjct 840 CAGTGAATCTGAAGATAGTGACACTGTAGAAGAC-AACAACACTTCTGAAGATGGTGACA 898
Query 901 CTGTAGAAGACAAAAACACTTCCGAAGAAAACA-TTGTGGAGTGACTCTTATTATTTTCT 959
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 899 CTGTAGAAGACAAAAACACTTCTGAAGAAAA-AGTTGTGGAGTGACTCTTATTATTTTCT 957
Query 960 CTGTTATCCGATAG-GAGCATGAGAATCTGACTAGAGATCTTATTACAGTTTTGAAATAA 1018
||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 CTGTTATCCAATAGAGAGCATGAGAATCTGACTACAGATCTTATTACAGTTTTGAAATAG 1017
Query 1019 CTACTGCTACAAAGAACACAATAATGAAGATGTAACAGAAATTCAGTAAACTATACTTCA 1078
||||||||||||||||||||| |||||||||||||||||| |||| ||||||| ||||||
Sbjct 1018 CTACTGCTACAAAGAACACAAAAATGAAGATGTAACAGAATTTCACTAAACTAGACTTCA 1077
Query 1079 ATCCTGCTAATGTGTGATGAATCACC 1104
||||||||||||||||||||||||||
Sbjct 1078 ATCCTGCTAATGTGTGATGAATCACC 1103
> Ahg482507 jgi|Araly1|482507|fgenesh2_kg.4__1567__AT2G35420.1
Length=903
Score = 62.1 bits (33), Expect = 9e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 1069 CTATACTTCAATCCTGCTAATGTGTGATGAATCACC 1104
||| ||||||||||||||||||||||||||||||||
Sbjct 903 CTAGACTTCAATCCTGCTAATGTGTGATGAATCACC 868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5