BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35420.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482507 jgi|Araly1|482507|fgenesh2_kg.4__1567__AT2G35420.1 1026 0.0
Ahg482506 jgi|Araly1|482506|fgenesh2_kg.4__1566__AT2G35410.1 62.1 8e-09
> Ahg482507 jgi|Araly1|482507|fgenesh2_kg.4__1567__AT2G35420.1
Length=903
Score = 1026 bits (555), Expect = 0.0
Identities = 687/748 (92%), Gaps = 20/748 (3%)
Strand=Plus/Plus
Query 238 TCAATACCAGCTACTGCTGTTTTCCCTAGTGTTTCCATGCCTGTCACCGTAGTTTTGACC 297
||||||||| |||||| |||||| |||| ||||||||||| ||||| |||||||||||
Sbjct 169 TCAATACCAACTACTGATGTTTTTCCTACCGTTTCCATGCCCATCACCATAGTTTTGACC 228
Query 298 GGTGTTCTTCTCTTTGTAATTTTCGCCGGATTCTTCTCTCTTTTCTTATGGCAG-TTTCT 356
|| |||||||||||||||||||| ||||||||||||||||||||||| |||| | |||||
Sbjct 229 GGCGTTCTTCTCTTTGTAATTTTTGCCGGATTCTTCTCTCTTTTCTTCTGGC-GATTTCT 287
Query 357 TCTGAATCGATTATTTACTA-CTTGGAACCTTCAACGAACACCTTACGGTGACCTAATCC 415
||||||||| || ||| | | ||||||| ||||| | |||||||||||||||| ||||||
Sbjct 288 TCTGAATCGCTTGTTTTC-AGCTTGGAATCTTCAGCAAACACCTTACGGTGACTTAATCC 346
Query 416 ATGTGGCCACTCCGCCTGAAAATA-CTGGCCTCGACCCGTTTATCATCCGGTCCTTTCCT 474
|||||||||||||||||||||| | | ||||||||||| ||||||||||||||||||||
Sbjct 347 ATGTGGCCACTCCGCCTGAAAA-ACCCGGCCTCGACCCATTTATCATCCGGTCCTTTCCC 405
Query 475 GTATTCCAC-TATTCATCTGCAACTAA-GAAAAATCATGGGACGGAATGCGCTATTTGCT 532
|| |||| | |||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 406 GTGTTCC-CTTATTCATCTGCAAC-AATGAAAAATCACGGGACGGAATGCGCTATTTGCT 463
Query 533 TGTCAGAGTTTTCAGATGAAGATACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC 592
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 464 TGTCAGAGTTTTCAGATGAAGACACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC 523
Query 593 ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG 583
Query 653 AG-TTAGATCCTGGCATGATTGGATCTGGAAGGCTTGAATCATTCCACAACACAGTCACA 711
|| || |||||||||||||| ||||||||||| | |||||| || |||||| ||||||||
Sbjct 584 AGCTT-GATCCTGGCATGATCGGATCTGGAAGCCATGAATCTTTGCACAACGCAGTCACA 642
Query 712 ATTACTATTCAGGACATAAACCATGATGAGGAAAATCCTCCAACCGCTGGTTCAAGCAAA 771
||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| |||
Sbjct 643 ATTACTATTCAGGACATAAACCATGATGAGGAAAACCCTCCTACCACAGGTTCAAGTAAA 702
Query 772 AGGCTAATAGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG 831
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AGGCTAATGGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG 762
Query 832 GTTAAGACTACGGATG-CTAATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG 890
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 763 GTTAAGACTACGGATGTC-AATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG 821
Query 891 TGTCTCGTTCGACGAACTTACTCGGTATGAAGGAGCAGGATGGCAATGGCTTGGTGATTC 950
|| |||||| |||||||||||||||||||| ||||| |||||| | ||||||||||
Sbjct 822 TGACTCGTTTGACGAACTTACTCGGTATGATGGAGCTGGATGG---T---TTGGTGATTC 875
Query 951 ATCACACATTAGCAGGATTGAAGTATAG 978
|||||||||||||||||||||||| |||
Sbjct 876 ATCACACATTAGCAGGATTGAAGTCTAG 903
Score = 119 bits (64), Expect = 4e-26
Identities = 96/110 (87%), Gaps = 7/110 (6%)
Strand=Plus/Plus
Query 11 GTCACAAAAGACTCGCTCAAAATGGTAAGCAAAGCCACTTCTG--TC--T--CTCAGACA 64
|||||| ||||||||||||||||| |||||||||||||||||| || | ||| ||||
Sbjct 1 GTCACAGAAGACTCGCTCAAAATGCTAAGCAAAGCCACTTCTGTCTCTGTGACTCGGACA 60
Query 65 TAGCCACTTTATTCTCCTCATTTCTCTCTATTAACTTGAACAATAATACT 114
|||||| | ||||||||||||||||||||||||||||||||||| |||
Sbjct 61 GAGCCACGTCCTTCTCCTCATTTCTCTCTATTAACTTGAACAATAA-ACT 109
> Ahg482506 jgi|Araly1|482506|fgenesh2_kg.4__1566__AT2G35410.1
Length=1103
Score = 62.1 bits (33), Expect = 8e-09
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Minus
Query 943 GGTGATTCATCACACATTAGCAGGATTGAAGTATAG 978
|||||||||||||||||||||||||||||||| |||
Sbjct 1103 GGTGATTCATCACACATTAGCAGGATTGAAGTCTAG 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5