BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35420.1 Length=978 Score E Sequences producing significant alignments: (Bits) Value Ahg482507 jgi|Araly1|482507|fgenesh2_kg.4__1567__AT2G35420.1 1026 0.0 Ahg482506 jgi|Araly1|482506|fgenesh2_kg.4__1566__AT2G35410.1 62.1 8e-09 > Ahg482507 jgi|Araly1|482507|fgenesh2_kg.4__1567__AT2G35420.1 Length=903 Score = 1026 bits (555), Expect = 0.0 Identities = 687/748 (92%), Gaps = 20/748 (3%) Strand=Plus/Plus Query 238 TCAATACCAGCTACTGCTGTTTTCCCTAGTGTTTCCATGCCTGTCACCGTAGTTTTGACC 297 ||||||||| |||||| |||||| |||| ||||||||||| ||||| ||||||||||| Sbjct 169 TCAATACCAACTACTGATGTTTTTCCTACCGTTTCCATGCCCATCACCATAGTTTTGACC 228 Query 298 GGTGTTCTTCTCTTTGTAATTTTCGCCGGATTCTTCTCTCTTTTCTTATGGCAG-TTTCT 356 || |||||||||||||||||||| ||||||||||||||||||||||| |||| | ||||| Sbjct 229 GGCGTTCTTCTCTTTGTAATTTTTGCCGGATTCTTCTCTCTTTTCTTCTGGC-GATTTCT 287 Query 357 TCTGAATCGATTATTTACTA-CTTGGAACCTTCAACGAACACCTTACGGTGACCTAATCC 415 ||||||||| || ||| | | ||||||| ||||| | |||||||||||||||| |||||| Sbjct 288 TCTGAATCGCTTGTTTTC-AGCTTGGAATCTTCAGCAAACACCTTACGGTGACTTAATCC 346 Query 416 ATGTGGCCACTCCGCCTGAAAATA-CTGGCCTCGACCCGTTTATCATCCGGTCCTTTCCT 474 |||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||| Sbjct 347 ATGTGGCCACTCCGCCTGAAAA-ACCCGGCCTCGACCCATTTATCATCCGGTCCTTTCCC 405 Query 475 GTATTCCAC-TATTCATCTGCAACTAA-GAAAAATCATGGGACGGAATGCGCTATTTGCT 532 || |||| | |||||||||||||| || ||||||||| |||||||||||||||||||||| Sbjct 406 GTGTTCC-CTTATTCATCTGCAAC-AATGAAAAATCACGGGACGGAATGCGCTATTTGCT 463 Query 533 TGTCAGAGTTTTCAGATGAAGATACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC 592 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 464 TGTCAGAGTTTTCAGATGAAGACACAGTTAGGCTCATAACGGTTTGTCGTCATCCCTTTC 523 Query 593 ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 524 ATTCAAATTGCATTGATCTTTGGTTTGAGTTACACAAGACTTGTCCTGTTTGCCGGTGTG 583 Query 653 AG-TTAGATCCTGGCATGATTGGATCTGGAAGGCTTGAATCATTCCACAACACAGTCACA 711 || || |||||||||||||| ||||||||||| | |||||| || |||||| |||||||| Sbjct 584 AGCTT-GATCCTGGCATGATCGGATCTGGAAGCCATGAATCTTTGCACAACGCAGTCACA 642 Query 712 ATTACTATTCAGGACATAAACCATGATGAGGAAAATCCTCCAACCGCTGGTTCAAGCAAA 771 ||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| ||| Sbjct 643 ATTACTATTCAGGACATAAACCATGATGAGGAAAACCCTCCTACCACAGGTTCAAGTAAA 702 Query 772 AGGCTAATAGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG 831 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 703 AGGCTAATGGAAGCCTCGGCTTGGCGATTCTCGAGGTCACATTCTACTGGACATTTCATG 762 Query 832 GTTAAGACTACGGATG-CTAATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG 890 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 763 GTTAAGACTACGGATGTC-AATGTGAAGTCCAAAAGAAGGCATTACCAAACAGGAAGCTG 821 Query 891 TGTCTCGTTCGACGAACTTACTCGGTATGAAGGAGCAGGATGGCAATGGCTTGGTGATTC 950 || |||||| |||||||||||||||||||| ||||| |||||| | |||||||||| Sbjct 822 TGACTCGTTTGACGAACTTACTCGGTATGATGGAGCTGGATGG---T---TTGGTGATTC 875 Query 951 ATCACACATTAGCAGGATTGAAGTATAG 978 |||||||||||||||||||||||| ||| Sbjct 876 ATCACACATTAGCAGGATTGAAGTCTAG 903 Score = 119 bits (64), Expect = 4e-26 Identities = 96/110 (87%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 11 GTCACAAAAGACTCGCTCAAAATGGTAAGCAAAGCCACTTCTG--TC--T--CTCAGACA 64 |||||| ||||||||||||||||| |||||||||||||||||| || | ||| |||| Sbjct 1 GTCACAGAAGACTCGCTCAAAATGCTAAGCAAAGCCACTTCTGTCTCTGTGACTCGGACA 60 Query 65 TAGCCACTTTATTCTCCTCATTTCTCTCTATTAACTTGAACAATAATACT 114 |||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct 61 GAGCCACGTCCTTCTCCTCATTTCTCTCTATTAACTTGAACAATAA-ACT 109 > Ahg482506 jgi|Araly1|482506|fgenesh2_kg.4__1566__AT2G35410.1 Length=1103 Score = 62.1 bits (33), Expect = 8e-09 Identities = 35/36 (97%), Gaps = 0/36 (0%) Strand=Plus/Minus Query 943 GGTGATTCATCACACATTAGCAGGATTGAAGTATAG 978 |||||||||||||||||||||||||||||||| ||| Sbjct 1103 GGTGATTCATCACACATTAGCAGGATTGAAGTCTAG 1068 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36331139901 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5