BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35430.1
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321255 jgi|Araly1|321255|fgenesh1_pm.C_scaffold_4001312 883 0.0
Ahg923779 jgi|Araly1|923779|scaffold_105060.1 296 2e-79
> Ahg321255 jgi|Araly1|321255|fgenesh1_pm.C_scaffold_4001312
Length=762
Score = 883 bits (478), Expect = 0.0
Identities = 681/775 (88%), Gaps = 29/775 (4%)
Strand=Plus/Plus
Query 129 ATGAGTCATCGGCGAGATTACGGCAGTGATGCAGTTCACGTGAGAATCACCCACGACCCT 188
|||||||| |||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct 1 ATGAGTCACCGGCGAGATTCCGGCAGCGATGCAGTTCACGTGAGAATTGCCAACGACCCT 60
Query 189 CCGCCTGAGAATTGTTTTCCAAATTCCGGCGACAGTTCCGTCTGGGCCACTGAGGATGAT 248
||||| || ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CCGCCGGATAATTGGTTTCCAAATCCCGGCGACAGTTCCGTCTGGGCCACTGAGGATGAT 120
Query 249 TACAGCCGTGTCTGGGCCA-TAAACTCTGATGGCGCAGAGTCTCCGAGCAAGAAGACACG 307
||||||||||||| | || | ||| | |||| | |||||||||||||||||||||||
Sbjct 121 TACAGCCGTGTCT-GTTCAGTGAACCCCGATGATACGGAGTCTCCGAGCAAGAAGACACG 179
Query 308 ATCTTCCTCCTCCTCCGAGATCGGGAAATCGTTCTTCAAGACGAAGCTTTGCTTCAAATT 367
||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 ATC-T--TCCTCCTCCGAGATCGGGAAATCGTTTTTCAAGACGAAGCTTTGCTTCAAATT 236
Query 368 CCGCGCCGGAACTTGTCCCTACTCCGCGAGCTCTTGCCACTTTGCTCACAGCGCGGAGGA 427
|||| ||||||||||||||||| |||||| |||||||||||||||||||||| | || ||
Sbjct 237 CCGCTCCGGAACTTGTCCCTACCCCGCGACCTCTTGCCACTTTGCTCACAGCTCCGAAGA 296
Query 428 GCTCCGTCTTCCTCCGCCGCCGCCGCCCAATTGGCAGGAGACGGTGACAGAGGCTTCAAG 487
|||||| | ||| ||||||||||||||| |||||||||||| | ||| | | |||
Sbjct 297 GCTCCG---GCGTCCACCGCCGCCGCCCAATCGGCAGGAGACGGCG-GAGA-G-TGGAAG 350
Query 488 AAACAGAGAAAGCTTTGCGGTTAGTTTAGG-CC-C-------T--CG-TG---GCAATGT 532
| ||||||||||||| |||||||||| || | | | || |||||||
Sbjct 351 --A-TTAGAAAGCTTTGCGATTAGTTTAGGTCCTCGTGGTTATGGTGATGCTAGCAATGT 407
Query 533 TGCTCAGACTCTCAAGTCTCCGAATTGGAAGACAAGGATTTGCAATAAGTGGCAGACTAC 592
|||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 408 TGCTCAGACTTTGAAGCCTCCGAATTGGAAGACAAGGATTTGCAATAAGTGGGAGACTAC 467
Query 593 TGGCTATTGTCCTTTTGGTTCTCACTGCCATTTTGCTCATGGACCTTCAGAGTTGCATAC 652
|| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 468 GGGGTATTGTCCTTTTGGTACTAACTGCCATTTTGCTCATGGAGCTTCAGAGTTGCATAC 527
Query 653 ATTTGGCGGAGGACTCGTTGAAGGAGAATGTAAGATCGGAACATCCGCCACTTTGGACAC 712
|||||| |||||||||||||||| |||| ||||||||||||||||| ||||| ||||||
Sbjct 528 ATTTGGTGGAGGACTCGTTGAAGAAGAAGGTAAGATCGGAACATCCACCACTCCGGACAC 587
Query 713 AAAGCAGAGAGGACAAGTAGACACAGTGACTAGCCTTGTTTCTCCTGGAGTCTCATCCCA 772
|| ||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||
Sbjct 588 AATGCAGACAGGACAAGTAGACACAGTGCCTAGCCTTGTTTCTCCTGGAGTCCCGTCCCA 647
Query 773 ACGGACATCTAGTGCTGTTACGCAGAAACCCAACGGAGTCAGAACTCAACGGAAATGGAA 832
||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 648 ACGGATATCTAGTGCTGTTACTCAGAAACCCAAAGGGGTCAGAACTCAACGGAAATGGAA 707
Query 833 AGGACCAGATAAAATCAGTCGTGTTTATGGTGATTGGATCGACGATATTGAGTAA 887
|||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 708 AGGACCGGATAAAATCAGTCGGGTTTATGGTGATTGGATCGACGATATTGAATAA 762
> Ahg923779 jgi|Araly1|923779|scaffold_105060.1
Length=455
Score = 296 bits (160), Expect = 2e-79
Identities = 208/231 (90%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 214 CCGGCGACAGTTCCGTCTGGGCCACTGAGGATGATTACAGCCGTGTCTGGGCCATAAACT 273
|||||||||||||| |||| ||||||| |||||||||| |||||||||||| |||||||
Sbjct 238 CCGGCGACAGTTCCTTCTGCACCACTGAAGATGATTACAACCGTGTCTGGGCAATAAACT 179
Query 274 CTGATGGCGCAGAGTCTCCGAGCAAGAAGACACGATCTTCCTCCTCCTCCGAGATCGGGA 333
|||||| |||||||||||||||||||||||||||| || ||||||||||||||| |||
Sbjct 178 CTGATGATGCAGAGTCTCCGAGCAAGAAGACACGAT-TT--TCCTCCTCCGAGATCAGGA 122
Query 334 AATCGTTCTTCAAGACGAAGCTTTGCTTCAAATTCCGCGCCGGAACTTGTCCCTACTCCG 393
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AATCGTTTTTCAAGACGAAGCTTTGCTTCAAATTCCGCTCCGGAACTTGTCCCTACTCCT 62
Query 394 CGAGCTCTTGCCACTTTGCTCACAGCGCGGAGGAGCTCCGTCTTCCTCCGC 444
|| |||||||||||| ||||||||| | | ||||||||| || ||| ||||
Sbjct 61 CGCGCTCTTGCCACTCTGCTCACAGGGAGAAGGAGCTCCATCGTCCACCGC 11
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38275408668
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5