BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35450.1
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482508 jgi|Araly1|482508|fgenesh2_kg.4__1568__AT2G35450.1 1478 0.0
> Ahg482508 jgi|Araly1|482508|fgenesh2_kg.4__1568__AT2G35450.1
Length=1109
Score = 1478 bits (800), Expect = 0.0
Identities = 890/934 (95%), Gaps = 4/934 (0%)
Strand=Plus/Plus
Query 129 ATCAGGACGGTAAAAATGGCGGCTTTTGCTGGGTCTGA-CTCAGAAACAACGTCGTCTAC 187
||||||||||| |||||| ||||| ||||||| ||||| | | |||||||| |||||| |
Sbjct 87 ATCAGGACGGTGAAAATGTCGGCTATTGCTGGCTCTGACCGC-GAAACAACATCGTCTTC 145
Query 188 CTCGAGAGTTATCGATTCTCATCTCCACATTTGGGCTTCTCCTCAAGAGGCCGAGACATA 247
| ||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 146 CGCGAGAGTCATCGATTCTCATCTCCACATTTGGGCTTCTCCTCAAGAGGCAGAAACTTA 205
Query 248 TCCTTATTTTCCTGGCCAAGAACCTACTTTGACTGGTGATGTCAATTTCTTGCTTAAGAA 307
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 206 TCCTTATTTTCCCGGCCAAGAACCTACTTTGACTGGTGATGTCGATTTCTTGCTTAAGAA 265
Query 308 CATGGAAGAGGCAAGAGTAGATGGAGCTCTCATTGTGCAACCCATAAATCACAAGTTTGA 367
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 266 CATGGAAGAGGCAAGAGTAGATGGAGCTCTCATTGTGCAACCCATCAATCACAAGTTTGA 325
Query 368 CCATTCTTTAGTAACAAGTGTTCTGAAGAGATACCCATCAAAGTTTGTCGGTTGTTGCCT 427
|||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 326 TCATTCTTTAGTAACAAGTGTTCTGAAGAAATACCCATCGAAGTTTGTCGGTTGTTGCCT 385
Query 428 TGCTAATCCTGCAGAAGATGGCAGTGGAATTACGCACCTTGAGAATCTTGTTTTAGAGAG 487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 TGCTAATCCTGCAGAAGATGGCAGTGGAATTACGCACCTTGAGAATCTTGTTTTAGAGAG 445
Query 488 TAATTATCGTGCTGTTCGGTTTAATCCCTACTTGTGGCCATCGGGTCAGAAGATGACAAA 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TAATTATCGTGCTGTTCGGTTTAATCCCTACTTGTGGCCATCGGGTCAGAAGATGACAAA 505
Query 548 TGCTGTTGGTAAAGCCTTGTTCTCTAAAGCAGGGGAGCTTTGTGTGCCTGTTGGCTTCAT 607
| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 506 TCCTGTTGGCAAAGCCTTGTTCTCTAAAGCAGGGGAGCTTGGTGTGCCTGTTGGCTTCAT 565
Query 608 GTGCATGAAGGGTCTAGATCTTCACATTGCAGAAATTGAGGAACTTTGCACAGAATTTCC 667
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 566 GTGCATGAAGGGTCTGGATCTGCACATTGCAGAAATTGAGGAACTGTGCACAGAATTTCC 625
Query 668 AAAGACAACT-GTTTTACTAGATCACGCTGGATTCTGCAAAGTACCAGAAAGTGGTGAGG 726
||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 626 AAAGACAG-TAGTTTTACTAGATCACGCTGGATTCTGCAAAGTACCAGAAAATGGTGAGG 684
Query 727 CAAAGCTTGCTTATTCTCAACTCATGAAGCTGTCTAGATTTCCACAGGTATATGTGAAAT 786
||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 685 CAAAGGTTGCTTATACTCAACTCATGAAGCTCTCTAGATTCCCACAGGTATATGTGAAAT 744
Query 787 TCAGTGCTCTATTCAGGATCTCAAGAACCGGCTTCCCGTATCAGGACCTATCGCCTCTCC 846
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 745 TCAGTGCTCTATTCAGGATCTCAAGAACCGGCTTCCCATATCAGGACCTATCGCCTCTCC 804
Query 847 TATCTCAACTTGTGTCCCATTTTGGGGCAAATCGTGTCATGTGGGGCAGTGACTTCCCAT 906
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TATCTCAACTTGTTTCCCATTTTGGGGCAAATCGTGTCATGTGGGGCAGTGACTTCCCAT 864
Query 907 TTGTTGTTCTTGAATGTGGATATAAAGAAGCTAAAGAAGCTGTGACTATCATTGCAAAAG 966
|||||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||
Sbjct 865 TTGTTGTTCTTGAATGTGGATACAAAGAAGCCAAAGAAGCTGTGACTATTATCGCAAAAG 924
Query 967 AAGCATCCTTGTCAAGTTCTGAGATGGACTGGATTCTGGGAAAGACTCTGATGCAGCTCT 1026
|||||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 925 AAGCATCCTTGTCAGGTTCTCAGATGGAATGGGTTCTGGGAAAGACTCTGATGCAGCTCT 984
Query 1027 TCCCTGGACAATGGGTTCTTCCTTGAGAGGCTTG 1060
||||||||||||||||||||||||||||||||||
Sbjct 985 TCCCTGGACAATGGGTTCTTCCTTGAGAGGCTTG 1018
Score = 154 bits (83), Expect = 2e-36
Identities = 88/90 (98%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 12 ATGGCTGTGACTCTGAGATTAACGAATTCTTTAGCATTTTCCAGTCATCCTCTAACGTCG 71
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCTGTGACTCTGAGATTAACGAATTCTTTAGCATTTTCCAGTCATCCTTTAACGTCG 60
Query 72 TCCGTACTGTTCCGAGGAAGCAAATCGATC 101
|||||||||||||||||||||||||| |||
Sbjct 61 TCCGTACTGTTCCGAGGAAGCAAATC-ATC 89
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5