BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35450.1 Length=1208 Score E Sequences producing significant alignments: (Bits) Value Ahg482508 jgi|Araly1|482508|fgenesh2_kg.4__1568__AT2G35450.1 1478 0.0 > Ahg482508 jgi|Araly1|482508|fgenesh2_kg.4__1568__AT2G35450.1 Length=1109 Score = 1478 bits (800), Expect = 0.0 Identities = 890/934 (95%), Gaps = 4/934 (0%) Strand=Plus/Plus Query 129 ATCAGGACGGTAAAAATGGCGGCTTTTGCTGGGTCTGA-CTCAGAAACAACGTCGTCTAC 187 ||||||||||| |||||| ||||| ||||||| ||||| | | |||||||| |||||| | Sbjct 87 ATCAGGACGGTGAAAATGTCGGCTATTGCTGGCTCTGACCGC-GAAACAACATCGTCTTC 145 Query 188 CTCGAGAGTTATCGATTCTCATCTCCACATTTGGGCTTCTCCTCAAGAGGCCGAGACATA 247 | ||||||| ||||||||||||||||||||||||||||||||||||||||| || || || Sbjct 146 CGCGAGAGTCATCGATTCTCATCTCCACATTTGGGCTTCTCCTCAAGAGGCAGAAACTTA 205 Query 248 TCCTTATTTTCCTGGCCAAGAACCTACTTTGACTGGTGATGTCAATTTCTTGCTTAAGAA 307 |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 206 TCCTTATTTTCCCGGCCAAGAACCTACTTTGACTGGTGATGTCGATTTCTTGCTTAAGAA 265 Query 308 CATGGAAGAGGCAAGAGTAGATGGAGCTCTCATTGTGCAACCCATAAATCACAAGTTTGA 367 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 266 CATGGAAGAGGCAAGAGTAGATGGAGCTCTCATTGTGCAACCCATCAATCACAAGTTTGA 325 Query 368 CCATTCTTTAGTAACAAGTGTTCTGAAGAGATACCCATCAAAGTTTGTCGGTTGTTGCCT 427 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 326 TCATTCTTTAGTAACAAGTGTTCTGAAGAAATACCCATCGAAGTTTGTCGGTTGTTGCCT 385 Query 428 TGCTAATCCTGCAGAAGATGGCAGTGGAATTACGCACCTTGAGAATCTTGTTTTAGAGAG 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 386 TGCTAATCCTGCAGAAGATGGCAGTGGAATTACGCACCTTGAGAATCTTGTTTTAGAGAG 445 Query 488 TAATTATCGTGCTGTTCGGTTTAATCCCTACTTGTGGCCATCGGGTCAGAAGATGACAAA 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 446 TAATTATCGTGCTGTTCGGTTTAATCCCTACTTGTGGCCATCGGGTCAGAAGATGACAAA 505 Query 548 TGCTGTTGGTAAAGCCTTGTTCTCTAAAGCAGGGGAGCTTTGTGTGCCTGTTGGCTTCAT 607 | ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 506 TCCTGTTGGCAAAGCCTTGTTCTCTAAAGCAGGGGAGCTTGGTGTGCCTGTTGGCTTCAT 565 Query 608 GTGCATGAAGGGTCTAGATCTTCACATTGCAGAAATTGAGGAACTTTGCACAGAATTTCC 667 ||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 566 GTGCATGAAGGGTCTGGATCTGCACATTGCAGAAATTGAGGAACTGTGCACAGAATTTCC 625 Query 668 AAAGACAACT-GTTTTACTAGATCACGCTGGATTCTGCAAAGTACCAGAAAGTGGTGAGG 726 ||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 626 AAAGACAG-TAGTTTTACTAGATCACGCTGGATTCTGCAAAGTACCAGAAAATGGTGAGG 684 Query 727 CAAAGCTTGCTTATTCTCAACTCATGAAGCTGTCTAGATTTCCACAGGTATATGTGAAAT 786 ||||| |||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 685 CAAAGGTTGCTTATACTCAACTCATGAAGCTCTCTAGATTCCCACAGGTATATGTGAAAT 744 Query 787 TCAGTGCTCTATTCAGGATCTCAAGAACCGGCTTCCCGTATCAGGACCTATCGCCTCTCC 846 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 745 TCAGTGCTCTATTCAGGATCTCAAGAACCGGCTTCCCATATCAGGACCTATCGCCTCTCC 804 Query 847 TATCTCAACTTGTGTCCCATTTTGGGGCAAATCGTGTCATGTGGGGCAGTGACTTCCCAT 906 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 TATCTCAACTTGTTTCCCATTTTGGGGCAAATCGTGTCATGTGGGGCAGTGACTTCCCAT 864 Query 907 TTGTTGTTCTTGAATGTGGATATAAAGAAGCTAAAGAAGCTGTGACTATCATTGCAAAAG 966 |||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||| Sbjct 865 TTGTTGTTCTTGAATGTGGATACAAAGAAGCCAAAGAAGCTGTGACTATTATCGCAAAAG 924 Query 967 AAGCATCCTTGTCAAGTTCTGAGATGGACTGGATTCTGGGAAAGACTCTGATGCAGCTCT 1026 |||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct 925 AAGCATCCTTGTCAGGTTCTCAGATGGAATGGGTTCTGGGAAAGACTCTGATGCAGCTCT 984 Query 1027 TCCCTGGACAATGGGTTCTTCCTTGAGAGGCTTG 1060 |||||||||||||||||||||||||||||||||| Sbjct 985 TCCCTGGACAATGGGTTCTTCCTTGAGAGGCTTG 1018 Score = 154 bits (83), Expect = 2e-36 Identities = 88/90 (98%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 12 ATGGCTGTGACTCTGAGATTAACGAATTCTTTAGCATTTTCCAGTCATCCTCTAACGTCG 71 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1 ATGGCTGTGACTCTGAGATTAACGAATTCTTTAGCATTTTCCAGTCATCCTTTAACGTCG 60 Query 72 TCCGTACTGTTCCGAGGAAGCAAATCGATC 101 |||||||||||||||||||||||||| ||| Sbjct 61 TCCGTACTGTTCCGAGGAAGCAAATC-ATC 89 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45099410811 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5