BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35460.1
Length=717
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934165 jgi|Araly1|934165|scaffold_402153.1 773 0.0
> Ahg934165 jgi|Araly1|934165|scaffold_402153.1
Length=763
Score = 773 bits (418), Expect = 0.0
Identities = 622/718 (87%), Gaps = 23/718 (3%)
Strand=Plus/Plus
Query 13 TTAAACGGCGCCAGTTACGGTCCACCAATCAAGCCACCGG-TGAAAACTTACTACAGTCA 71
|||||||||||||| ||||||||||||||| |||| |||| ||||| |||||||||||
Sbjct 36 TTAAACGGCGCCAGCTACGGTCCACCAATCCAGCCTCCGGCAAAAAAC-TACTACAGTCA 94
Query 72 TGGCCGACGCGGCTCCGACGTAGGTTGCGGTATCTGTGGTTGTTTCTCCAGCTGTCTCCT 131
|||||||||||| | || ||||||||| | |||||| |||| ||||||||||| |||||
Sbjct 95 AGGCCGACGCGGCGCTGATGTAGGTTGCAGCATCTGTCGTTGCTTCTCCAGCTGCCTCCT 154
Query 132 TTGTTGCGG-AGGTTGTCTCGTAAACATCATCTGCAACATCCTCATCGGTGTA-CTCGTT 189
||| ||||| | |||| ||||||| |||||||||||||||||||||||||||| || |||
Sbjct 155 TTGCTGCGGCA-GTTGCCTCGTAAGCATCATCTGCAACATCCTCATCGGTGTAGCT-GTT 212
Query 190 TGCCTTGGAGTCGTTGCTTTAATCCTCTGGTTTATCCTCCGACCAAACGTCGTGAAATTC 249
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 213 TGCCTCGGAGTCGTTGCTTTAATCCTCTGGTTTATCCTCCGACCAAAGGTCGTGACGTTC 272
Query 250 CAAGTTACGGAAGCTGATTTAACGCGATTTGAGTTCGATCCAAGAAGCCATAACCTTCAT 309
|| || ||||||||| |||||||| |||||||| |||||||| || |||||||||||
Sbjct 273 CATGTCACGGAAGCTAATTTAACGAGATTTGAGCTCGATCCACTAAATAATAACCTTCAT 332
Query 310 TACAATATCTCGTTGAACTTT-TC-GATACGTAATCCTAATCAACGTCTTGGGATACACT 367
||||| |||||||| | ||| || | | |||||||||||||||||||||||||| || |
Sbjct 333 TACAACCTCTCGTTGGA-TTTCTCAGCT-CGTAATCCTAATCAACGTCTTGGGATTCAAT 390
Query 368 ATGATCAGTTAG-AGGTGAGAGGTTACTACGGTGATCAGCGTTTTTCTG-CTGCGAATAT 425
|||||||||||| || | || ||||| || |||||||||||||| | | ||| ||||||
Sbjct 391 ATGATCAGTTAGAAGCT-AGGGGTTATTATGGTGATCAGCGTTTCGC-GTCTGTGAATAT 448
Query 426 GACGTCGTTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGT--TA-AACGG 482
| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 449 GCCGTCTTTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGTACTTGAACGG 508
Query 483 ACAGAAACTGGTTTTGCTCGGTGCCGGTGGACGGAGAGATTTT-AGGGAGGATCGG-AGG 540
|| || ||||||||| | || |||||||| ||||||||| | ||| |||||||| ||
Sbjct 509 ACTGAGCCTGGTTTTGTTAGGCGCCGGTGGCCGGAGAGATCTGGAGG-AGGATCGGGAG- 566
Query 541 TCTGGGGTTTACAGGATCGACGTGAAGCTCAGATTTAAGTTAAGGTTTAAGTTTGGGTTT 600
|||||| |||||||||| | ||||||||| ||||||||| | ||||||||||||||||||
Sbjct 567 TCTGGGATTTACAGGATTGGCGTGAAGCTGAGATTTAAGATCAGGTTTAAGTTTGGGTTT 626
Query 601 TTGAACTCATGGGCCGTTAGGCCCAAGATTAAGTGTCATCTCAAAGTCCCCTTGAGCACC 660
|| |||||||||||||||| ||||||| |||||||||||||||| || || |||| |||
Sbjct 627 TTCAACTCATGGGCCGTTAAGCCCAAGTTTAAGTGTCATCTCAAGGTTCCGTTGAATACC 686
Query 661 TCTAGTTCAG-ATGAAAGATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTCTGA 717
|||||||||| | || ||||||||||||||||||||||||||||||||||||| |||
Sbjct 687 TCTAGTTCAGCACGAG-GATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTTTGA 743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26381058564
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5