BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35470.1
Length=817
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482509 jgi|Araly1|482509|fgenesh2_kg.4__1569__AT2G35470.1 856 0.0
> Ahg482509 jgi|Araly1|482509|fgenesh2_kg.4__1569__AT2G35470.1
Length=748
Score = 856 bits (463), Expect = 0.0
Identities = 624/699 (89%), Gaps = 22/699 (3%)
Strand=Plus/Plus
Query 122 CAT-CTTTCTCTCTCTGTCGGCGATGCAGAGGATATCGTTAGACTCATCAGCTTCGAAGC 180
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 62 CATACTTTCTCTCTCTGTCGGCGATGCAGAGGCTATCGTTAGACTCATCAGCTTCGAAGC 121
Query 181 TCCATAGCTATGGAGGACGAAAGGACGATACCTACGATATTGATGACTTGAAACCAGCT- 239
|||||||||||||||||||||||||||||||||| || || |||||||||||||||| |
Sbjct 122 TCCATAGCTATGGAGGACGAAAGGACGATACCTATGACATCGATGACTTGAAACCAG-TC 180
Query 240 TCCTCTTCTCCTTCTTCGTCGTCATCCGCAGTAGATTACGACGATCACGAGCTCAAAGAC 299
|| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||
Sbjct 181 TCATCTTCTCCTTCTTCGTCGTCGTCCGCGGCAGATTACGACGATCACGAGCTCAAGGAC 240
Query 300 TTTAAGCCGCGACGGTTATCATCGTTGCAATCTCCTTTTGTTACGACGAATCAGAAACAA 359
|||| ||||||||||||||||||| ||||||| ||||| | || |||||||||||||||
Sbjct 241 TTTAGGCCGCGACGGTTATCATCGCTGCAATCGCCTTTCGCGACAACGAATCAGAAACAA 300
Query 360 GAGAAGCTTGTTCACTTCATTCCGATTCTCACTCTCATCTGCTTTATCATCCTTTACCTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGAAGCTTGTTCACTTCATTCCGATTCTCACTCTCATCTGCTTTATCATCCTTTACCTC 360
Query 420 ACTTCTTACGCTCCGTCTCAATCAGATTTGGCTCAGTTTAATGGATTCATGCGTCCTTCG 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTTCTTACGCTCCGTCGCAATCAGATTTGGCTCAGTTTAATGGATTCATGCGTCCTTCG 420
Query 480 AAACATCTAGAATCATCCGACGAAAATGGCGACGAAATTTCTGGATTTATCAGAGCCGAT 539
|||||||||||||| | || ||||||||||| || | |||||||||||||||||||||
Sbjct 421 AAACATCTAGAATC--C-GATGAAAATGGCGA--AA-TATCTGGATTTATCAGAGCCGAT 474
Query 540 ACTCTATCCATCCGTAGTAGTGTACGAAACCTACAAGAGACGGAAAGCTTCAC-GACGAA 598
|| ||| ||||||||||||| ||| | || || ||||||||||||||||| | | ||||
Sbjct 475 ACACTAGCCATCCGTAGTAGCGTAAGGAATCTGCAAGAGACGGAAAGCTTTGCCG-CGAA 533
Query 599 ATCACTTCCCCGTCGCCGGACTTCTCACCGGAAAACCGCCGACTTCTAGCAATCGCAATC 658
|||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| | |||
Sbjct 534 ATCACTTCCCCGTCGCAGGACCTCTCACCGGAAAACCGCCGATTTCTAGCTATCTCGATC 593
Query 659 TTAATTTTTATTCGTCGCATCGCATGTCGATTTGTTTACTTCCAATTAAAATATTGCGAG 718
| ||||| | ||| |||||| |||||| |||||||| ||| |||||||||||| |||
Sbjct 594 TAAATTTATCTTCCTCGCATTGCATGTTGATTTGTTCG-TTCGAATTAAAATATTACGAT 652
Query 719 TCGCGTTTCTGTTATAACTGATCGAAA-GGC-AGA----TAAAATCGAATAAAA-CCTCG 771
||||||||||||||||||| | | ||| || ||| ||||||||||| || |||||
Sbjct 653 TCGCGTTTCTGTTATAACTAA-CTAAATGGATAGAAAGATAAAATCGAATGTAAGCCTCG 711
Query 772 CCGCCGATGAAATTATAACTGTCATGCTAGAGTACGCTG 810
||||||||| ||||| | | ||||||||||||| |||||
Sbjct 712 CCGCCGATGGAATTA-ACC-GTCATGCTAGAGTGCGCTG 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30193350264
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5