BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35480.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934167 jgi|Araly1|934167|scaffold_402155.1 913 0.0
> Ahg934167 jgi|Araly1|934167|scaffold_402155.1
Length=638
Score = 913 bits (494), Expect = 0.0
Identities = 593/641 (93%), Gaps = 6/641 (1%)
Strand=Plus/Plus
Query 93 aagacgaagaagaaagttgtagaaagTAATGGTGTTGTGGGAGTTAGCTCTAGGAACAGC 152
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAGAAGAAAGTTGTAGAAAGTAATGGTGTTGTGGGAGTTAGCTCTAGGAACAGC 60
Query 153 TTACTTCTTGGGGATTAGGCGGACTTACCGGCTCGCATTGAAGACCCAGCGTCGGCTTGT 212
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CTACTTCTTGGGGCTTAGGCGGACTTACCGGCTCGCATTGAAGACCCAGCGTCGGATTGT 120
Query 213 TAGCCCTAAGCATCCAAGGATTCGAGATTTTATGCATCGGAGGACTTATCAAATCTTTGA 272
|| ||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 121 CAGTGCTAAGTATCCAAGGATCCGAAATTTTATGCATCGGAGGACTCATCAAATCTTTGA 180
Query 273 TATGGCACTTAGGGTCCACAAGAACATACAACAGAGAGACATGGTTATTGGTCGGAATCT 332
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||
Sbjct 181 TATGGCACTTAGGGTCCACAAGAATATACAACAGAGAGACATGGAAATTGGTCGGAGTCT 240
Query 333 TGGAAACTGGATTCTCCGGGGGCTTGACCGGATGAAGCCATCGGCTCAGGTTCTACTACC 392
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 241 AGGAAACTGGATTCTCCGGGGGCTTGATCGGATGAAGCCAGCGGCTCAGGTTCTACTACC 300
Query 393 AAAGA-ATACAGAGCCAAGCATAGACAAGGCGAA-AAGAGTATTACAATCAACCCGTCTT 450
||| | ||||||||||||||||||||||||| || ||| || ||| |||||||||| ||
Sbjct 301 AAA-ACATACAGAGCCAAGCATAGACAAGGC-AACAAGGGTTTTAGAATCAACCCGACTC 358
Query 451 AAACCACATGTTAACACGCAGACTCCTCAGAACCGTGAGGTTGATAGGAACTTGTTCATG 510
||||| |||||||||||||||||||||||||||| |||||| |||||| |||||||| ||
Sbjct 359 AAACCGCATGTTAACACGCAGACTCCTCAGAACCATGAGGTCGATAGGCACTTGTTCTTG 418
Query 511 TCCTTGAGGAACTTTCGGTCCAAATACCCCATTGCTTCGATGATGATGATCAAACCTCCA 570
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || |||
Sbjct 419 TCCTTGAGGAACTTTCGGTCCAAATTCCCCACTGCCTCGATGATGATGATCAAGCCACCA 478
Query 571 AGATCCA-CGGGAACTACTACTCAGTACAGGCCTTACAGTGTTGGTGAATCCAGTCTGAT 629
||| ||| |||| ||||| |||||||| |||||||||| || ||||||||||||||||||
Sbjct 479 AGACCCATCGGG-ACTACCACTCAGTATAGGCCTTACACTGCTGGTGAATCCAGTCTGAT 537
Query 630 TAAACCAATTTATGCTAGAGGCGGGTTCAACAGCGTCATCAGGAAGGACATTTTGCAGTG 689
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 TAAACCGATTTATGCTAGAGGCGAGTTCAACAGCGTCATCAGGAAGGACATTTTGCAGTG 597
Query 690 GATGGTGCAGAAGAGATAAAGCCGCCAAAATTCATCAAAGG 730
||||||||||||||||||||||| |||| ||||||||||||
Sbjct 598 GATGGTGCAGAAGAGATAAAGCCACCAATATTCATCAAAGG 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5