BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35500.1
Length=1425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482510 jgi|Araly1|482510|fgenesh2_kg.4__1570__AT2G35500.1 1879 0.0
> Ahg482510 jgi|Araly1|482510|fgenesh2_kg.4__1570__AT2G35500.1
Length=1257
Score = 1879 bits (1017), Expect = 0.0
Identities = 1152/1217 (95%), Gaps = 9/1217 (1%)
Strand=Plus/Plus
Query 29 ATCATCAATGGCTGCTTTTGCTTCTGGTTTGG---CTATAATCTTCAACTCTCCTTCACT 85
|||||| ||||||||||||||||||||||||| ||| ||||||| |||||||||| ||
Sbjct 1 ATCATCCATGGCTGCTTTTGCTTCTGGTTTGGCTTCTACAATCTTCTACTCTCCTTCCCT 60
Query 86 AAACCCTGTCACAACTCAAGCGAC-CTTCCTTTCTTCGAATCGGATTCGTTCCTCTCCTC 144
||||||| |||| |||||| || ||| ||||| ||| ||||||||||||||| ||||
Sbjct 61 AAACCCTCTCACCTGTCAAGCAACTCTT-TTTTCTCCGATTCGGATTCGTTCCTCGCCTC 119
Query 145 GCGTTTTCAGTGGATTTCACAGCCTCCGACGTCGCGGCTTCCGGCGATTCTCTCAAAATG 204
|||||||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||||
Sbjct 120 GCGTTTTCAGGGGATTACATAGCCTCCGACGCCGCGGCTTTCGGCGATTCTCTCAGAATG 179
Query 205 TTATCC-CCGACCGGTTTAATAGCTTCTCATGTAATTGCTTATCCGCCGTATCCACCAGC 263
||| || |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 180 TTA-CCGCCGATCGGTTCAATAGCTTCTCGTGTAACTGCTTATCCGCCGTATCCACCAGC 238
Query 264 ACTATCGATTACGAGTTCACGGATGGTGGCAAAGAGGTGGAATTAAGATTGAGGTTAAAG 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 ACTATCGATTACGAGTTCACGGATGGTGGCAAAGAGGTGGAATTAAGATTGAGGTTGAAG 298
Query 324 ACAGGTGAGATACTTTCTCCAAAGGATATATCTGTTGACGCAGATGGAACATCGTTAGCC 383
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 ACAGGTGACACACTTTCTCCAAAGGATATATCTGTTGATGCAGATGGAACATCGTTAGCC 358
Query 384 GTTAAAGAAAAGCGGAATGGATTGCTGATTACACTTCTAGAGACTAACCA-TCTCTTTGA 442
|||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 359 GTTAAAGAAAAGCGTAATGGATTGCTGATTACACTTCTAGAGACTAACCAGT-TATTTGA 417
Query 443 GAAGATTATGCCCTCTGAAACAATATGGTACATAGACGAAGATCAGTTGGTTGTGAATAT 502
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 418 GAAGATTATGCCCTCTGAAACAATATGGTACATAGACGAAGATCAGTTGGTTGTCAACAT 477
Query 503 GAAGAAGGTGGATGGGGAATTGAAGTGGCCTGATATTGTCGAGTCCTGGGAGTCTTTGAC 562
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 478 GAAGAAGGTGGATGGGGAATTGAAGTGGCCTGATATTGTTGAGTCCTGGGAATCTTTGAC 537
Query 563 TGCAGGAATGATGCAACTTCTTAAAGGTGCATCAATCTACATTGTTGGAGATTCAACTGA 622
||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 538 TGCGGGAATGTTGCAACTTCTTAAAGGTGCATCAATCTACATTGTGGGAGATTCAACTGA 597
Query 623 AATCAACCAAAAAGTGTCTCGAGAGCTAGCCGTTGGCCTTGGGTACAGTCCTTTAGATTC 682
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATCAACCAAAAAGTGTCTCGGGAGCTAGCCGTTGGCCTTGGGTACAGTCCTTTAGATTC 657
Query 683 AAAGGAATTGCTGGAAAGCTTTTCCAAGCAAACAATCGATTCTTGGATTCTTGCAGAAGG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AAAGGAATTGCTGGAAAGCTTTTCCAAGCAAACAATCGATTCTTGGATTCTTGCAGAAGG 717
Query 743 GCCGGATTCTGTAGCTGAAGCAGAGAGTTCGGTATTGGAAAGCTTGAGCAGCCATGTGCG 802
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 718 GCCGGATTCTGTAGCTGAAGCAGAGAGTTCGGTGTTGGAAAGCTTGAGCAGCCATGTGCG 777
Query 803 TACTGTTGTCTCAACTTTGGGAGGTAAACATGGAGCTGCGGGGAGAGCTGATCAGTGGAG 862
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 778 TACTGTTGTCTCAACTTTGGGAGGTAAACATGGAGCTGCAGGGAGAGCCGATCAGTGGAG 837
Query 863 ACATCTTTACTCCGGATTTACCGTTTGGGTATCACAGACTGAAGCCACAGATGAAGAGTC 922
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 838 ACATCTTTACTCCGGATTTACCGTTTGGGTATCACAGACTGAAGCGACAGATGAAGAATC 897
Query 923 AGCTAAAGAAGAAGCGAGGAGAAGTAAGCAAGAGAGGGAGATTGGGTATTCAAACGCCGA 982
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 898 AGCTAAAGAAGAAGCGAGGCGAAACAAGCAAGAGAGGGAGATTGGGTATTCAAACGCAGA 957
Query 983 CGTTGTGGTGAAGCTCCAAGGTTGGGACCCGACGCATGCAAAGAGCGTGGCTCAGGCTTC 1042
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 CGTGGTGGTGAAGCTCCAAGGTTGGGACCCGACGCATGCTAAGAGCGTGGCTCAGGCTTC 1017
Query 1043 CTTGAGTGCACTTAAGCAACTGATCATCTCAGACAAGGGACTTCCAGGTAAGAAGAGTTT 1102
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 ATTGAGTGCACTTAAGCAACTGATCATCTCAGACAAGGGACTTCCAGGTAAGAAGAGTTT 1077
Query 1103 GTACATACGCTTGGGATGCCGTGGCGATTGGCCCAATATAAAACCGCCGGGATGGGATCC 1162
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1078 GTACATACGCTTGGGATGCCGTGGCGATTGGCCCAATATCAAACCGCCGGGATGGGATCC 1137
Query 1163 ATCGTCTGACACTGGACCTCATCCACAGTTTACATAAACAGTGTCAAGACATGCTTTTTG 1222
||||||||||| ||| |||||||||| || ||||||||||| |||||||||||||||||
Sbjct 1138 GTCGTCTGACACCGGAGCTCATCCACAATTCACATAAACAGTTTCAAGACATGCTTTTTG 1197
Query 1223 CTCTCTCCTACAAACGA 1239
|||||||||||||||||
Sbjct 1198 CTCTCTCCTACAAACGA 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53288252755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5