BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35520.2
Length=629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048 556 5e-158
Ahg922300 jgi|Araly1|922300|scaffold_103581.1 383 9e-106
> Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048
Length=351
Score = 556 bits (301), Expect = 5e-158
Identities = 330/343 (96%), Gaps = 5/343 (1%)
Strand=Plus/Plus
Query 104 TCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCACTCTGCTTATAC-CGCTAC 162
|||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 13 TCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCGTTCTGCTTAT-CTCGCTAC 71
Query 163 ACCAACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGAT 222
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 ACCGACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGA- 130
Query 223 TCAGCAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCATTTCTCTCTGG 282
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 131 TC--CAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCGTTTCTCTCAGG 188
Query 283 AGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAA 342
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 189 AGTTCTCTCGTGTATTGGGACAGCCGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAA 248
Query 343 AGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTG 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 AGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTG 308
Query 403 CAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATAA 445
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct 309 CAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTAGGATAA 351
> Ahg922300 jgi|Araly1|922300|scaffold_103581.1
Length=388
Score = 383 bits (207), Expect = 9e-106
Identities = 310/358 (87%), Gaps = 13/358 (4%)
Strand=Plus/Plus
Query 92 GAAATGGTGAAATCGACTAGTAAGGATGCTCAGGATCT-CTTCCATTCTCTTCACTCTGC 150
||||||||||||||||| |||||||||||||||||||| ||| | ||||||| |||||
Sbjct 18 GAAATGGTGAAATCGACAAGTAAGGATGCTCAGGATCTGTTTCGA-TCTCTTCGTTCTGC 76
Query 151 TTATACCGCTACACCAACGAATCTCAAGATCATCGACCTT-TATGTTTG-TTTCGCGGTC 208
|||| ||||||| || || ||||| ||||||||||| ||| |||| | | |||||| |||
Sbjct 77 TTATTCCGCTACTCCGACTAATCTGAAGATCATCGA-CTTGTATG-TCGTTTTCGCTGTC 134
Query 209 TTCACAGCTTTGATTCAGCAGGTTGCTTACATGGCTCTT-GTTGGATCGTTTCC-TTTCA 266
||||| ||| ||||| ||||| ||||| |||||| || || ||||| ||||| ||| |
Sbjct 135 TTCACCGCTCTGATT---CAGGTGGCTTATATGGCT-TTGGTGGGATCATTTCCGTTT-A 189
Query 267 ACTCATTTCTCTCTGGAGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCC 326
||||||| || |||||||||||||| ||||||||||| || ||||| ||||| ||||| |
Sbjct 190 ACTCATTCCTATCTGGAGTTCTCTCTTGTATCGGGACTGCAGTTCTGGCTGTTTGCCTTC 249
Query 327 GGATTCAAGTGAACAAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTG 386
||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 250 GGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTGGCACCGGAGAGAGCTTTTG 309
Query 387 CTGATTTTGTCCTCTGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATA 444
|||||||||| ||||||||||||||||||||| | |||||||| |||||| | |||||
Sbjct 310 CTGATTTTGTTCTCTGCAACTTAGTCCTCCACTTGGTGATCATCAACTTCCTCGGATA 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23026241868
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5