BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35520.2 Length=629 Score E Sequences producing significant alignments: (Bits) Value Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048 556 5e-158 Ahg922300 jgi|Araly1|922300|scaffold_103581.1 383 9e-106 > Ahg901398 jgi|Araly1|901398|Al_scaffold_0004_2048 Length=351 Score = 556 bits (301), Expect = 5e-158 Identities = 330/343 (96%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 104 TCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCACTCTGCTTATAC-CGCTAC 162 |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||| Sbjct 13 TCGACTAGTAAGGATGCTCAGGATCTCTTCCATTCTCTTCGTTCTGCTTAT-CTCGCTAC 71 Query 163 ACCAACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGAT 222 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 72 ACCGACGAATCTCAAGATCATCGACCTTTATGTTTGTTTCGCGGTCTTCACAGCTTTGA- 130 Query 223 TCAGCAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCATTTCTCTCTGG 282 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 131 TC--CAGGTTGCTTACATGGCTCTTGTTGGATCGTTTCCTTTCAACTCGTTTCTCTCAGG 188 Query 283 AGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAA 342 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 189 AGTTCTCTCGTGTATTGGGACAGCCGTTCTTGCTGTCTGCCTCCGGATTCAAGTGAACAA 248 Query 343 AGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTG 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 AGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTGCTGATTTTGTCCTCTG 308 Query 403 CAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATAA 445 |||||||||||||||||||||||||||||||||||| |||||| Sbjct 309 CAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTAGGATAA 351 > Ahg922300 jgi|Araly1|922300|scaffold_103581.1 Length=388 Score = 383 bits (207), Expect = 9e-106 Identities = 310/358 (87%), Gaps = 13/358 (4%) Strand=Plus/Plus Query 92 GAAATGGTGAAATCGACTAGTAAGGATGCTCAGGATCT-CTTCCATTCTCTTCACTCTGC 150 ||||||||||||||||| |||||||||||||||||||| ||| | ||||||| ||||| Sbjct 18 GAAATGGTGAAATCGACAAGTAAGGATGCTCAGGATCTGTTTCGA-TCTCTTCGTTCTGC 76 Query 151 TTATACCGCTACACCAACGAATCTCAAGATCATCGACCTT-TATGTTTG-TTTCGCGGTC 208 |||| ||||||| || || ||||| ||||||||||| ||| |||| | | |||||| ||| Sbjct 77 TTATTCCGCTACTCCGACTAATCTGAAGATCATCGA-CTTGTATG-TCGTTTTCGCTGTC 134 Query 209 TTCACAGCTTTGATTCAGCAGGTTGCTTACATGGCTCTT-GTTGGATCGTTTCC-TTTCA 266 ||||| ||| ||||| ||||| ||||| |||||| || || ||||| ||||| ||| | Sbjct 135 TTCACCGCTCTGATT---CAGGTGGCTTATATGGCT-TTGGTGGGATCATTTCCGTTT-A 189 Query 267 ACTCATTTCTCTCTGGAGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCC 326 ||||||| || |||||||||||||| ||||||||||| || ||||| ||||| ||||| | Sbjct 190 ACTCATTCCTATCTGGAGTTCTCTCTTGTATCGGGACTGCAGTTCTGGCTGTTTGCCTTC 249 Query 327 GGATTCAAGTGAACAAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTG 386 ||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||| Sbjct 250 GGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTGGCACCGGAGAGAGCTTTTG 309 Query 387 CTGATTTTGTCCTCTGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATA 444 |||||||||| ||||||||||||||||||||| | |||||||| |||||| | ||||| Sbjct 310 CTGATTTTGTTCTCTGCAACTTAGTCCTCCACTTGGTGATCATCAACTTCCTCGGATA 367 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23026241868 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5