BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35530.1
Length=1729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482512 jgi|Araly1|482512|fgenesh2_kg.4__1572__AT2G35530.1 1360 0.0
Ahg473396 jgi|Araly1|473396|fgenesh2_kg.1__3350__AT1G32150.1 736 0.0
> Ahg482512 jgi|Araly1|482512|fgenesh2_kg.4__1572__AT2G35530.1
Length=1707
Score = 1360 bits (736), Expect = 0.0
Identities = 886/954 (93%), Gaps = 27/954 (3%)
Strand=Plus/Plus
Query 751 TGAAGGAAGTGATGGGAACTCTCAAAATGATTCGGGATCTGGACTAGATGGAAAGGATGC 810
||||||||||||||| |||||||||||||| |||||||||||||| || |||||||||||
Sbjct 766 TGAAGGAAGTGATGGAAACTCTCAAAATGACTCGGGATCTGGACTGGACGGAAAGGATGC 825
Query 811 TGAAGCAGCATCAGAGAATGGTGGTTCTGCCAATGGTCCGCAAAATGGAAGTGCTGGTAC 870
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 826 TGAAGCAGCATCAGAGAATGGTGGTTCTGCCAATGGTCCACGAAATGGAAGTGCTGGTAC 885
Query 871 ACCTATTCTACCGGTGAGCCAGACCGTACCAATCATGCCAATGACAGCTGCAGGTGTTCC 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 ACCTATTCTACCGGTGAGCCAGACCGTACCAATCATGCCAATGACAGCTGCAGGTGTTCC 945
Query 931 TGGCCCACCAACAAATTTAAATATTGGGATGGATTACTGGGGTGCTCCAACTTCAGCTGG 990
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 946 CGGCCCACCAACAAATTTAAATATTGGGATGGATTACTGGGGTGCTCCTACTTCAGCTGC 1005
Query 991 TATCCCTGGAATGCATGGGAAAGTATCTACACCAGTTCCTGGAGTTGTTGCTCCAGGCTC 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1006 TATCCCTGGAATGCATGGGAAAGTATCTACACCAGTTCCTGGAGTTGTTGCTCCAGGGTC 1065
Query 1051 GCGAGATGGTGGCCATTCACAACCCTGGTTACAGGACGATAGAGAACTTAAGCGACAGAG 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GCGAGATGGTGGCCATTCACAACCCTGGTTACAGGACGATAGAGAACTTAAGCGACAGAG 1125
Query 1111 ACGGAAGCAGTCCAATAGGGAGTCTGCTCGAAGATCAAGGTTGCGTAAACAGGCCGAATG 1170
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1126 ACGGAAGCAGTCCAATAGGGAGTCTGCTCGAAGATCCAGGTTGCGTAAACAGGCCGAATG 1185
Query 1171 TGATGAGCTGGCCCAACGCGCTGAGGTGTTGAACGAAGAAAACACAAATCTCAGAGCAGA 1230
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1186 TGATGAGCTGGCCCAACGCGCTGAGGTGTTAAACGAAGAAAACACAAATCTCAGAGCAGA 1245
Query 1231 AATCAACAAGCTCAAAAGCCAATGCGAAGAGCTTACCACCGAGAACACCTCTCTCAAGGA 1290
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1246 AATCAACAAGCTCAAAAGCCAATGCGAAGAGCTCACCGCCGAGAACACCTCTCTCAAGGA 1305
Query 1291 CCAACTTTCATTATTCCCTCCACTTGAAGGCATAAGCATGGACAATGACCACCAAGAACC 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 CCAACTTTCATTATTCCCTCCACTTGAAGGCATAAGCATGGACAATGACCACCAAGAACC 1365
Query 1351 AGACACCAATCAAACAGGTGCCGCAGAGAGAAAGGTTGATTCATACAAAGACTCAACGTG 1410
|||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||
Sbjct 1366 AGACACCAATCAAACAGGCGCTGCAGAGAGAAAGGTTGATTCCTACAAAGACACAACGTG 1425
Query 1411 AGAAGACATAGAGCAAAACCAATTCCTAACACAGGTAT-AAAAAA-GTAGCAGCAGCAGC 1468
|| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1426 AGGGGACATAGAGCAAAACCAATTCCTAACACAGGTATAAAAAAATGTAGCAGCAGCAGC 1485
Query 1469 AACAACAACACTCGGCGGTTCTTTGCTAACAGATGGTTTGTAGGATTTTAGGCATCAGAG 1528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 AACAACAACACTCGGCGGTTCTTTGCTAACAGATGGTTTGTAGGATTTTAGGCATCAGAG 1545
Query 1529 ATCGATTGGTTCCGAATAGTTTATTGAGGGTTGTTGGTCCAGTGTATGTGTGTGTAAGTT 1588
||| ||||||| ||||||||| || | | || || | || || ||| ||| || |
Sbjct 1546 ATCAATTGGTTTGGAATAGTTTCTTTA-GCTTCTT-G---AGGGT-TGTCTGT-CCAG-T 1597
Query 1589 ACGAAATTAGATATTGGGAGAAAAAATTCCCT-CGTTTA-ATGTTTTACTTTGCCTTTGC 1646
| | | || | | | || || || | ||| || |||||||||| |||| |
Sbjct 1598 --G----T-G-TA-T--GTG--TAAGTT-ACTAC-ATTAGATATTTTACTTTGTCTTTTC 1642
Query 1647 TCTACTTGCAGAAGCGAATCTGAGGCAATGTGCTTATCTGTATCAAAATTGTTA 1700
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1643 TCTATTTGCAGAAGCGAATTTGAGGCAATGTGCTTATCTGTATCAAAATTGTTA 1696
Score = 1109 bits (600), Expect = 0.0
Identities = 662/692 (96%), Gaps = 3/692 (0%)
Strand=Plus/Plus
Query 33 TTGGTCAAGAGACATTGATTCTCTTAAATTTCTGCAAAATTAAGCTCAGAGATTCACACC 92
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1 TTGGTCAAGAGACATTGATTCTCTCAAATTTCTGCAAAATCAAGCTCAGAGATTCACACC 60
Query 93 GCATCTGAAATTGTGC-TCAGAGGGGTTCCAAATATTACCAGTCGTTAGGAAGCAATCAC 151
||||| ||||||||| ||||| | ||||||| ||||||||||||||||||||||| ||
Sbjct 61 ACATCTCAAATTGTGCTTCAGA--GTTTCCAAACATTACCAGTCGTTAGGAAGCAATTAC 118
Query 152 GAGTTGTTTTAGGAATTAGTGAACGTGATAATGGCTAGCAATGAGATGGAAAAATCGAGT 211
| |||||||||| |||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 119 GGGTTGTTTTAGAAATTAGCGAACGTGATAATGGCTAGCAATGAGACGGAAAAATCTAGT 178
Query 212 AAAGAGAAGGAACCTAAAACACCTCCTCCTTCTTCTACTGCCCCTCCCTCTTCACAGGAA 271
||||||||||||||||||||||| ||| |||||||| |||| ||||| ||||||||||||
Sbjct 179 AAAGAGAAGGAACCTAAAACACCGCCTTCTTCTTCTGCTGCTCCTCCGTCTTCACAGGAA 238
Query 272 CCTTCATCGGCTGTGAGTGCTGGCATGGCTACTCCAGATTGGTCTGGTTTTCAGGCATAT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CCTTCATCGGCTGTGAGTGCTGGCATGGCTACTCCAGATTGGTCTGGTTTTCAGGCATAT 298
Query 332 TCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCTAGTCCCCAACCTCACCCTTATATG 391
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 TCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCAAGTCCCCAACCTCACCCTTATATG 358
Query 392 TGGGGAGTTCAGCATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATG 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TGGGGAGTTCAGCATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTATGTTGCAATG 418
Query 452 TATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGGGTTCTTATCCCTATAGC 511
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 419 TATCCCCCAGGTGGCATGTATGCGCATCCTTCAATGCCTCCGGGTTCTTATCCATATAGC 478
Query 512 CCTTATGCTATGCCTTCTCCAAATGGAATGACTGAAGTTTCTGGCAATACTACAGGCGGC 571
|||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 479 CCTTATGCCATGCCTTCCCCAAATGGAATGACTGAAGTTTCTGGGAATACTACAGGCGGC 538
Query 572 ACTGATGGTGATGCTAAACAATCTGAAGTGAAGGAAAAATTGCCCATCAAAAGATCAAGA 631
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACTGAGGGTGATGCCAAACAATCTGAAGTGAAGGAAAAATTGCCCATCAAAAGATCAAGA 598
Query 632 GGAAGCTTGGGAAGTTTGAACATGATTACAGGAAAGAACAATGAACCTGGGAAAAACTCA 691
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GGAAGCTTGGGAAGTTTGAACATGATTACAGGAAAGAACAATGAACCTGGGAAAAACTCG 658
Query 692 GGAGCATCAGCTAATGGAGCTTACTCCAAAAG 723
||||||||||||||||||||||||||||||||
Sbjct 659 GGAGCATCAGCTAATGGAGCTTACTCCAAAAG 690
> Ahg473396 jgi|Araly1|473396|fgenesh2_kg.1__3350__AT1G32150.1
Length=1414
Score = 736 bits (398), Expect = 0.0
Identities = 695/833 (83%), Gaps = 41/833 (5%)
Strand=Plus/Plus
Query 159 TTTAGGAA-TTAGTGAACGTGA-TAATGGCTAGCAATGAGATGGAAAAATCGA-GTAAAG 215
|||| ||| || ||||| |||| |||||| ||||| ||||||||||||||| | ||||||
Sbjct 101 TTTA-GAAGTTGGTGAATGTGATTAATGGGTAGCAGTGAGATGGAAAAATC-AGGTAAAG 158
Query 216 AGAAGGAACCTAA-A--ACACCTCC-TC--CTTCTTCTACTGC-CC--CT-C-CCT-CTT 263
|||| ||| |||| | |||| || || |||||||| |||| || || | || ||
Sbjct 159 AGAAAGAAACTAAGACTCCACCGCCTTCGTCTTCTTCTTCTGCTCCTGCTACTGCTGTTT 218
Query 264 CACAGGAACCTTCATCGGCTGTGAGTGCTGGCA-TGGCTACTCCAGATTGGTCTGGTTTT 322
||||||||||||| || ||||||||||||| | ||||||||| |||||||||||||||
Sbjct 219 CACAGGAACCTTCTTCTTCTGTGAGTGCTGG-AGTGGCTACTCAAGATTGGTCTGGTTTC 277
Query 323 CAGGCATATTCTCCTATGCCGCCGCCTCATGGTTATGTGGCATCTAGTCCCCAACCTCAC 382
||||| ||||||||||| ||| ||||||||||| || ||||| ||||| |||||||||
Sbjct 278 CAGGCTTATTCTCCTAT---GCCACCTCATGGTTACGTAGCATCAAGTCCTCAACCTCAC 334
Query 383 CCTTATATGTGGGGAGTTCAGCATATGATGCCTCCTTATGGAACTCCGCCTCATCCTTAT 442
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 335 CCTTATATGTGGGGCGTTCAGCATATGATGCCTCCTTATGGAACACCGCCTCATCCATAT 394
Query 443 GTTGCAATGTATCCCCCAGGTGGCATGTACGCACATCCTTCAATGCCTCCGGGTTCTTAT 502
|||||||||||||| |||||||||||||| |||||||||||| | |||||||| ||||||
Sbjct 395 GTTGCAATGTATCCTCCAGGTGGCATGTATGCACATCCTTCATTACCTCCGGGGTCTTAT 454
Query 503 CCCTATAG-CCCTTATGCTATGCCTTCTCCAAATGGAATGACTGAAGTTTCTGGCAATAC 561
|| ||||| |||| |||| ||||||||||| ||||||||| |||||| |||||| |||||
Sbjct 455 CCATATAGTCCCT-ATGCAATGCCTTCTCCTAATGGAATGGCTGAAGCTTCTGGTAATAC 513
Query 562 TAC-AGGCGGCACTGATGGTGATGCTAAACAATCTGAAGTGAAGGAAAAATTGCCCATCA 620
| || | ||||| ||||||||||||| |||||| | ||| ||||||||||| ||||
Sbjct 514 TGGTAGT-GTTACTGAGGGTGATGCTAAACCATCTGATGGGAACGAAAAATTGCCTATCA 572
Query 621 AAAGATCAAGAGGAAGCTTGGGAAGTTTGAACATGATTACAGGAAAGAACAATGAACCTG 680
||||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||| |||
Sbjct 573 AAAGATCAAAAGGAAGCTTGGGAAGTTTGAATATGATTATAGGAAAGAAGAATGAAGCTG 632
Query 681 GGAAAAACTCAGGAGCATCAGCTAATGGAGCTTACTCCAAAAGTGGGGAGAGTGCTTCTG 740
| ||||||||||||||||| ||||||||||||| || ||||||| ||||| |||||||
Sbjct 633 GAAAAAACTCAGGAGCATCGGCTAATGGAGCTTGTTCTAAAAGTGCTGAGAGCGCTTCTG 692
Query 741 ATGGTTCAAGTGAAGGAAGTGATGGGAACTCTCAAAATGATTCGGGATCTGGACTAGAT- 799
|||| |||||||| |||||||||| || || ||||| || || || ||| ||| | |
Sbjct 693 ATGGATCAAGTGACGGAAGTGATGCAAATTCACAAAACGACTCTGGCTCTAGAC-ACAAC 751
Query 800 GGAAAGGATGCTGAAGCAGCATCAGAGAATGGTGGTTCTGC-CAATGGTCCGCAAAATGG 858
|| ||||||| |||| |||| ||||||| |||||||||||| || ||| || | |
Sbjct 752 GGGAAGGATGGTGAAACAGCTTCAGAGAGTGGTGGTTCTGCTCA-TGGACCACCCCGT-- 808
Query 859 AAGTGCTGGTACACCTATTCTACCGGTGAGCCAGACCGTAC-CAATCATGCCAATGACAG 917
|| || | | | || ||||||||||| ||||||||| | | ||||||||| || | |
Sbjct 809 AA-TG--G--A-AG-TAATCTACCGGTGAACCAGACCGT-CGCGATCATGCCAGTGTCGG 860
Query 918 CTGCAGGTGTTCCTGGCCCACCAACAAATTTAAATATTGGGATGGATTACTGG 970
|| |||||||||| ||||||||||||||| ||||||| || |||||||| |||
Sbjct 861 CTACAGGTGTTCCAGGCCCACCAACAAATCTAAATATCGGAATGGATTATTGG 913
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64867687235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5