BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35540.1
Length=1773
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482513 jgi|Araly1|482513|fgenesh2_kg.4__1573__AT2G35540.1 2050 0.0
> Ahg482513 jgi|Araly1|482513|fgenesh2_kg.4__1573__AT2G35540.1
Length=1737
Score = 2050 bits (1110), Expect = 0.0
Identities = 1282/1365 (94%), Gaps = 11/1365 (1%)
Strand=Plus/Plus
Query 419 AGGGGGAAATGGTTAGCGGTGGTTCTGGTGGTGATGAAACGTCAACGTTTTCGGCGGTTT 478
|||| |||||||| || ||||||| ||||| |||||||||||| ||||||||| ||||||
Sbjct 374 AGGGAGAAATGGTAAGTGGTGGTTGTGGTGATGATGAAACGTCGACGTTTTCGACGGTTT 433
Query 479 GTTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGTATTTAGGACAAAATTTGATGT 538
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 434 GCTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGAATTTAGGACAAAATTTGATGT 493
Query 539 GCCCTACTTGCAAGAATAGTTTTGAGGCGAAGGAAGTTGAGAAGGAAGAAGAGGGT---- 594
|| ||| ||||||||| | ||||||||| |||||||||||||||||||||||||||
Sbjct 494 GCTCTAGTTGCAAGAAGATTTTTGAGGCAAAGGAAGTTGAGAAGGAAGAAGAGGGTAGAG 553
Query 595 A--G-A--GAAAATGGAGCTTGTACTTCCAAGATCATAACATATAGTAGGAGGAAGAGGC 649
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 554 ATGGAAGTGAAAATGGAGCTTGTACTTCCAAGATTATAACATATAGTAGGAGGAAGAGGC 613
Query 650 CTGTTGATAGCGATGGTGAAAGTCTGATAAAAGAAGTTGAGACAGGGGAGATGAGTCAGG 709
|| ||| |||||||||||| ||||| | || ||||||||||||||||||||||||| |||
Sbjct 614 CTCTTGGTAGCGATGGTGAGAGTCTTAGAAGAGAAGTTGAGACAGGGGAGATGAGTGAGG 673
Query 710 AAGCAGCAGAAGCTATTAATGTATTTGAGGGGTCGGATGAAGAGGATGAAGGGATGATGA 769
|| |||||||||||||||||||| |||| ||| ||||||||| ||||||||||||||||
Sbjct 674 GAGGAGCAGAAGCTATTAATGTATCTGAGAGGTTGGATGAAGAAGATGAAGGGATGATGA 733
Query 770 CTTTGGCAGAAATGCAAGCGGTGATAAAGAGAAATAAGTCGAAGGTGAATTCGAAGATCA 829
||||||||||||||||| |||||||||||||||| || ||||||||||| ||||||||||
Sbjct 734 CTTTGGCAGAAATGCAATCGGTGATAAAGAGAAACAAATCGAAGGTGAAGTCGAAGATCA 793
Query 830 CTGAGAAAGATAGCAGTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTTAG 889
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 794 CTGAGAAAAATAGCATTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTCAG 853
Query 890 CTGATGCCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAACGCA-GTgaataataaa 948
|||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 854 CTGATGTCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAAC-AAGGTGAATAATAAA 912
Query 949 caagaagttttaaagaataggaagaatataaagaagaagaagaTGGCGAACCACAAGGAT 1008
| |||| ||||||||||| |||||||||||||||||||||||| ||||||||||| ||
Sbjct 913 CGGGAAGCTTTAAAGAATAATAAGAATATAAAGAAGAAGAAGATGACGAACCACAAGAAT 972
Query 1009 TTAACTGAGATAGTGGATTTAGAATACGTGCCTCGGGTTGATAGGAAGAGGGATCGTGGT 1068
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 973 TTAACTGAGATTGTGGATTTAGAATACGTGCCACGGGTTGATAGGAAGAGGGATCGTGGT 1032
Query 1069 AAGTTAAGCCAAGAAATGTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAG 1128
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 AAGTTGAGCCAAGAAATCTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAG 1092
Query 1129 GACCGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATATATGATGGTGGTGAT 1188
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1093 GACAGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATCTATGATGGTGGTGAT 1152
Query 1189 GACAAAATGCCTCGGAGTTACTGTTTAGTTAGTGAAGTAGTCTCTTTGAATCCTTTTAAG 1248
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1153 GACAAAATGCCTCGGAGTTACTGCTTGGTTAGTGAAGTAGTCTCTTTGAACCCTTTTAAG 1212
Query 1249 GTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGT 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGT 1272
Query 1309 TCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTTCAGAGAAAGCTTTGATAGAACAAGTG 1368
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1273 TCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTGCAGAGAAAGCTTTGATCGAACAAGTG 1332
Query 1369 AAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAATATACCAAATATAT 1428
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1333 AAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAGTATACCAAATATAT 1392
Query 1429 CCAAAGAAAGGCTCGGTTTGGGCAGTCTACTCAGAGACAAATCCAGGTCTTCAGAGAAGA 1488
|| | |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||
Sbjct 1393 CCCAGGAAAGGCTCGGTTTGGGCAGTCTACTCAGATACAAATTCAGGTCCTCAGAGAAGA 1452
Query 1489 AAGACCAGACGCTATGAGATTGTCGTATGCTTGACAATGTATACTGATGCATATGGATTA 1548
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1453 AAGACCAGACGCTATGAGATTGTCGTGTGCTTGACGATGTATACTGATGCATATGGCTTG 1512
Query 1549 AGTGTAGCATATTTGGAGAAGGTTAACGACTATAGCAACCTGTTCAAGAGACGGGATTAC 1608
||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||
Sbjct 1513 AGTGTGGCATATTTGGAGAAGGTAAACGACTGTAGCAACTTGTTCAAGAGACGGGATTAC 1572
Query 1609 GGGTATAATGCAGTCAGGTGGGTCGAGAAAGAAGATGTTGCAGCCTTGCTCTCTCATCAG 1668
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1573 GGGTACAATGCAGTCAGGTGGGTCGAGAAAGATGATGTTGCAGCCTTGCTCTCTCATCAG 1632
Query 1669 ATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTG 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 ATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTG 1692
Query 1729 CTTGATCTTGCTTCTGTTCCTCCTGATTTGGTTTCTGCCACTTAG 1773
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1693 CTTGATCTTGCTTCTGTTCCTCCTGACTTGGTTTCTGCCACTTAG 1737
Score = 595 bits (322), Expect = 3e-169
Identities = 358/376 (95%), Gaps = 0/376 (0%)
Strand=Plus/Plus
Query 1 ATGGCTTCTGGATCAGACTCAGAAGTAGAAAAGGAATCCATACACCACAAAGCACTAGCG 60
||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCGTCTGTATCAGACTCAGAAGTAGAAAAGGAATCCATACACCATAAAGCACTAGCG 60
Query 61 GAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCCTTAACTCACGCGCGGAAAGCTCTC 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCGTTAACTCACGCGCGGAAAGCTCTC 120
Query 121 AGCTTGTCTCCGAACACGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATCATCAGC 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 AGCTTGTCTCCGAACGCGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATTATCAGC 180
Query 181 TCCGCCGCCACAGTCGCCGGAGGTTTTCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCT 240
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TCCGCCGCAACAGTCGCTGGAGGTTTGCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCT 240
Query 241 TTTTCTCATATTAATACCATAAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCT 300
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TTTTCTCATATCAATACCATTAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCT 300
Query 301 GATAAGAATCCGTATGTGGGGTGTGAGGAGGGGTTCAAACTTTTGAATGAGGCCTTTAGG 360
||||||||||| || ||||| || |||||||| ||||| |||||||||||||| ||||||
Sbjct 301 GATAAGAATCCATACGTGGGATGCGAGGAGGGATTCAAGCTTTTGAATGAGGCTTTTAGG 360
Query 361 GTTTTCTCTGATAAGG 376
||||||||||||||||
Sbjct 361 GTTTTCTCTGATAAGG 376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66543658015
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5