BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35540.1 Length=1773 Score E Sequences producing significant alignments: (Bits) Value Ahg482513 jgi|Araly1|482513|fgenesh2_kg.4__1573__AT2G35540.1 2050 0.0 > Ahg482513 jgi|Araly1|482513|fgenesh2_kg.4__1573__AT2G35540.1 Length=1737 Score = 2050 bits (1110), Expect = 0.0 Identities = 1282/1365 (94%), Gaps = 11/1365 (1%) Strand=Plus/Plus Query 419 AGGGGGAAATGGTTAGCGGTGGTTCTGGTGGTGATGAAACGTCAACGTTTTCGGCGGTTT 478 |||| |||||||| || ||||||| ||||| |||||||||||| ||||||||| |||||| Sbjct 374 AGGGAGAAATGGTAAGTGGTGGTTGTGGTGATGATGAAACGTCGACGTTTTCGACGGTTT 433 Query 479 GTTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGTATTTAGGACAAAATTTGATGT 538 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 434 GCTCGGGTTGTAGGTCGGTGCATAAGTTTGATAGGAAGAATTTAGGACAAAATTTGATGT 493 Query 539 GCCCTACTTGCAAGAATAGTTTTGAGGCGAAGGAAGTTGAGAAGGAAGAAGAGGGT---- 594 || ||| ||||||||| | ||||||||| ||||||||||||||||||||||||||| Sbjct 494 GCTCTAGTTGCAAGAAGATTTTTGAGGCAAAGGAAGTTGAGAAGGAAGAAGAGGGTAGAG 553 Query 595 A--G-A--GAAAATGGAGCTTGTACTTCCAAGATCATAACATATAGTAGGAGGAAGAGGC 649 | | | |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 554 ATGGAAGTGAAAATGGAGCTTGTACTTCCAAGATTATAACATATAGTAGGAGGAAGAGGC 613 Query 650 CTGTTGATAGCGATGGTGAAAGTCTGATAAAAGAAGTTGAGACAGGGGAGATGAGTCAGG 709 || ||| |||||||||||| ||||| | || ||||||||||||||||||||||||| ||| Sbjct 614 CTCTTGGTAGCGATGGTGAGAGTCTTAGAAGAGAAGTTGAGACAGGGGAGATGAGTGAGG 673 Query 710 AAGCAGCAGAAGCTATTAATGTATTTGAGGGGTCGGATGAAGAGGATGAAGGGATGATGA 769 || |||||||||||||||||||| |||| ||| ||||||||| |||||||||||||||| Sbjct 674 GAGGAGCAGAAGCTATTAATGTATCTGAGAGGTTGGATGAAGAAGATGAAGGGATGATGA 733 Query 770 CTTTGGCAGAAATGCAAGCGGTGATAAAGAGAAATAAGTCGAAGGTGAATTCGAAGATCA 829 ||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||||| Sbjct 734 CTTTGGCAGAAATGCAATCGGTGATAAAGAGAAACAAATCGAAGGTGAAGTCGAAGATCA 793 Query 830 CTGAGAAAGATAGCAGTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTTAG 889 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 794 CTGAGAAAAATAGCATTGGAGAAGAAAACATGGGAAGGGAAACGCAGAAGAGATCTTCAG 853 Query 890 CTGATGCCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAACGCA-GTgaataataaa 948 |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 854 CTGATGTCTCCATGACTGAAACGTTAAGGGAGATGAGTACTAAC-AAGGTGAATAATAAA 912 Query 949 caagaagttttaaagaataggaagaatataaagaagaagaagaTGGCGAACCACAAGGAT 1008 | |||| ||||||||||| |||||||||||||||||||||||| ||||||||||| || Sbjct 913 CGGGAAGCTTTAAAGAATAATAAGAATATAAAGAAGAAGAAGATGACGAACCACAAGAAT 972 Query 1009 TTAACTGAGATAGTGGATTTAGAATACGTGCCTCGGGTTGATAGGAAGAGGGATCGTGGT 1068 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 973 TTAACTGAGATTGTGGATTTAGAATACGTGCCACGGGTTGATAGGAAGAGGGATCGTGGT 1032 Query 1069 AAGTTAAGCCAAGAAATGTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAG 1128 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 AAGTTGAGCCAAGAAATCTATATGGAAGACGAGGATTTTGAACTGTATGATTTTGATAAG 1092 Query 1129 GACCGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATATATGATGGTGGTGAT 1188 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1093 GACAGGATGCCGAGGAGCTTCAAGAAAGGGCAGATTTGGGCGATCTATGATGGTGGTGAT 1152 Query 1189 GACAAAATGCCTCGGAGTTACTGTTTAGTTAGTGAAGTAGTCTCTTTGAATCCTTTTAAG 1248 ||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||| Sbjct 1153 GACAAAATGCCTCGGAGTTACTGCTTGGTTAGTGAAGTAGTCTCTTTGAACCCTTTTAAG 1212 Query 1249 GTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGT 1308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1213 GTATGGATCAGCTGGTTGGATTTTGAGAGCGAGAAACTAATCTCTTGGATGAAGATTAGT 1272 Query 1309 TCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTTCAGAGAAAGCTTTGATAGAACAAGTG 1368 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 1273 TCTTCTCATATGCCTTGTGGTAGGTTCCGGGTTGCAGAGAAAGCTTTGATCGAACAAGTG 1332 Query 1369 AAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAATATACCAAATATAT 1428 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1333 AAACCATTCTCTCACCTTGTCAACTGCGAAAGGGCTGCACGAGAAGTATACCAAATATAT 1392 Query 1429 CCAAAGAAAGGCTCGGTTTGGGCAGTCTACTCAGAGACAAATCCAGGTCTTCAGAGAAGA 1488 || | |||||||||||||||||||||||||||||| |||||| |||||| |||||||||| Sbjct 1393 CCCAGGAAAGGCTCGGTTTGGGCAGTCTACTCAGATACAAATTCAGGTCCTCAGAGAAGA 1452 Query 1489 AAGACCAGACGCTATGAGATTGTCGTATGCTTGACAATGTATACTGATGCATATGGATTA 1548 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 1453 AAGACCAGACGCTATGAGATTGTCGTGTGCTTGACGATGTATACTGATGCATATGGCTTG 1512 Query 1549 AGTGTAGCATATTTGGAGAAGGTTAACGACTATAGCAACCTGTTCAAGAGACGGGATTAC 1608 ||||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| Sbjct 1513 AGTGTGGCATATTTGGAGAAGGTAAACGACTGTAGCAACTTGTTCAAGAGACGGGATTAC 1572 Query 1609 GGGTATAATGCAGTCAGGTGGGTCGAGAAAGAAGATGTTGCAGCCTTGCTCTCTCATCAG 1668 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1573 GGGTACAATGCAGTCAGGTGGGTCGAGAAAGATGATGTTGCAGCCTTGCTCTCTCATCAG 1632 Query 1669 ATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTG 1728 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1633 ATTCCGGCCAAGAAGCTGCCTGAAGATGAATCTGGAGCTGATCTGAAAGAGTCTTGGGTG 1692 Query 1729 CTTGATCTTGCTTCTGTTCCTCCTGATTTGGTTTCTGCCACTTAG 1773 |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1693 CTTGATCTTGCTTCTGTTCCTCCTGACTTGGTTTCTGCCACTTAG 1737 Score = 595 bits (322), Expect = 3e-169 Identities = 358/376 (95%), Gaps = 0/376 (0%) Strand=Plus/Plus Query 1 ATGGCTTCTGGATCAGACTCAGAAGTAGAAAAGGAATCCATACACCACAAAGCACTAGCG 60 ||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGCGTCTGTATCAGACTCAGAAGTAGAAAAGGAATCCATACACCATAAAGCACTAGCG 60 Query 61 GAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCCTTAACTCACGCGCGGAAAGCTCTC 120 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 61 GAATCGAGTTTCAATTGCGGTGATTTGATGTCGGCGTTAACTCACGCGCGGAAAGCTCTC 120 Query 121 AGCTTGTCTCCGAACACGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATCATCAGC 180 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| Sbjct 121 AGCTTGTCTCCGAACGCGGAAGGTTTATCCGCCATGGTCACCGCTTTCGAGATTATCAGC 180 Query 181 TCCGCCGCCACAGTCGCCGGAGGTTTTCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCT 240 |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 181 TCCGCCGCAACAGTCGCTGGAGGTTTGCCGGAATGGTACAAGGTTCTAAAGGTAGAGCCT 240 Query 241 TTTTCTCATATTAATACCATAAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCT 300 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 241 TTTTCTCATATCAATACCATTAAACAACAGTATAGGAAGCTAGCTTTGGTGTTGCATCCT 300 Query 301 GATAAGAATCCGTATGTGGGGTGTGAGGAGGGGTTCAAACTTTTGAATGAGGCCTTTAGG 360 ||||||||||| || ||||| || |||||||| ||||| |||||||||||||| |||||| Sbjct 301 GATAAGAATCCATACGTGGGATGCGAGGAGGGATTCAAGCTTTTGAATGAGGCTTTTAGG 360 Query 361 GTTTTCTCTGATAAGG 376 |||||||||||||||| Sbjct 361 GTTTTCTCTGATAAGG 376 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66543658015 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5