BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35550.1
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482514 jgi|Araly1|482514|fgenesh2_kg.4__1574__AT2G35550.4 1105 0.0
> Ahg482514 jgi|Araly1|482514|fgenesh2_kg.4__1574__AT2G35550.4
Length=867
Score = 1105 bits (598), Expect = 0.0
Identities = 692/736 (94%), Gaps = 12/736 (2%)
Strand=Plus/Plus
Query 292 CGAGCTGCAACGCGAAGGTGTGATCTTTCCACTGAAACTAGCTATCAAGATGAATTCATT 351
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 CGAGCTGCGACGTGAAGGTGTGATCTTTCCACTGAAACTAGCTATCAAGATGAATTCATT 197
Query 352 TCCTGCACAAAACCTT-ATGCTATCTGCTACAAACGCAAACAAGGACTCAGGCTTGCGTA 410
|||| ||||||| ||| ||||||||||||||||| |||||||||||| || |||||||||
Sbjct 198 TCCTTCACAAAA-CTTGATGCTATCTGCTACAAATGCAAACAAGGACGCAAGCTTGCGTA 256
Query 411 CGTCTAATGCTCATTGGTTACATTCATGTATCGCCGTTCCAAAGACCACAGGCATTGATC 470
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 257 CGTCTAATGCTCATTGGTTACATTCCTGTATCGCCGTTCCAAAGACCACAGGCATTGATC 316
Query 471 TTTCTC-AGGAACCTCCTGCTGAAGGTGTGATGGTGCCTCAATCTCATTTGTTTCCTCCT 529
|||||| || || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 317 TTTCTCAAGCAA-CTCCTGCTGAAGGTGTGATGGTGCCTCAATCTCGTTTGTTTCCTCCT 375
Query 530 CCTATTAGAGATTCCAGAAACGATACT-GAAACTGTGAAACAGAAGTCCGTAAATCAGTC 588
|||| ||||||||||||||| |||| | |||||||||||||||||||| |||||||||||
Sbjct 376 CCTACTAGAGATTCCAGAAATGATA-TGGAAACTGTGAAACAGAAGTCTGTAAATCAGTC 434
Query 589 TCCTTCGAAAGCTTTGAAGCCAAAACCGCAAAGGAAGAAACGCTCTGTATCCAACAAGTC 648
||||| |||| ||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 435 TCCTTTGAAATCTTTGAAGCCAAACCCGCCAAGGAAGAAACGCTCTGCATCCAACAAGTC 494
Query 649 AAAGAAAACACCT-AGCATACCAGAAACAAAACGTGAGAAAAAGAATCTGGACATCAACA 707
|||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 495 AAAGAAAACA-CTGAGCATACCAGAAACAAAACGCGAGAAAAAGAATCTGGACATCAACA 553
Query 708 TTGACATCTCAAGCTTTGATACTTCTGGGGTTCCTCCTCCTGTATGTTCATGTACAGGCG 767
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 554 TTGACATCTCAAGCTTTGATACTTCTGGGGTTCCTCCTCCTGTTTGTTCATGTACAGGCG 613
Query 768 TTTCAAGGGTTTGCTACAAATGGGGCATGGGCGGTTGGCAATCCTCATGTTGTACCATCA 827
||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||
Sbjct 614 TTTCAAGGGTTTGCTACAAGTGGGGCATGGGCGGTTGGCAATCCTCGTGCTGTACCATCA 673
Query 828 GCATATCGACATACCCACTACCCATGAGCACAACAAGACCT-GGAGCTCGTCTTGCAGGA 886
||||||||||||||||||||||||||||||| |||||||| || | ||||||||| |||
Sbjct 674 GCATATCGACATACCCACTACCCATGAGCACCACAAGACCCAGG-GTTCGTCTTGCTGGA 732
Query 887 AGAAAAATGAGCAATGGTGCTTATGTTAAGCTCCTTGCGAGGCTTGC-GGACGAAGGCTA 945
|||||||||||||||||||||||||| ||||||||||| |||||||| || |||||| ||
Sbjct 733 AGAAAAATGAGCAATGGTGCTTATGTCAAGCTCCTTGCTAGGCTTGCTGG-CGAAGGTTA 791
Query 946 TGACCTCTCTCACCCTCTTGATCTCAAGAACCATTGGGCCAGACACGGTACTAACAAGTT 1005
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TAACCTCTCTCACCCTGTTGATCTCAAGAACCATTGGGCCAGACACGGTACTAACAAGTT 851
Query 1006 TGTGACCATCAAGTAG 1021
|||||| |||||||||
Sbjct 852 TGTGACTATCAAGTAG 867
Score = 161 bits (87), Expect = 1e-38
Identities = 123/139 (88%), Gaps = 7/139 (5%)
Strand=Plus/Plus
Query 1 GAGAGAAAGAGTGCGCAGAGTGAGCGAGAGCATAGCGGTGGAGTGTCGCCACTGGTAACT 60
||||||||||||||||||||||||| ||||||||||||||||||| | ||||| |||||
Sbjct 5 GAGAGAAAGAGTGCGCAGAGTGAGC--GAGCATAGCGGTGGAGTGTTGTCACTGCTAACT 62
Query 61 C-CGACGATTTTTCTCGTTTGCGTAAGCCG-AAAGATCACTCtttttttGGTGTCGACTC 118
| |||||||| ||| |||| ||| ||||| ||||||||||| | |||||||||||||||
Sbjct 63 CTTGACGATTTCTCTTGTTTACGT-AGCCGAAAAGATCACTC-TCTTTTGGTGTCGACTC 120
Query 119 TGTTTCTGCCGTATGATTC 137
|||||||| |||||||||
Sbjct 121 TGTTTCTGG-GTATGATTC 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48416104590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5