BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35585.1

Length=785
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934176 jgi|Araly1|934176|scaffold_402164.1                        739    0.0  


> Ahg934176 jgi|Araly1|934176|scaffold_402164.1
Length=510

 Score =  739 bits (400),  Expect = 0.0
 Identities = 478/514 (93%), Gaps = 11/514 (2%)
 Strand=Plus/Plus

Query  207  TAATCGAATTCAATAGCATGGTTGGTATTTTCTCCAGGTTTTCTGTTGTTAGAGGCAGCC  266
            |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct  6    TAATTGAATTCAATAGCATGGTTGGTATTTTCTCCAGATTTTCTGTTGTTAGAGGCGGCC  65

Query  267  ATA-GACGAACACAGAGTGCCATCGATGGCAGGGAAGTATTGTCTCCAAGATCTGATCTT  325
            ||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  66   ATAGGA-GAACACAGAGTGCCATCGATGGCAGGGAAGTCTTGTCTCCAAGATCTGATCTT  124

Query  326  GCTCCGGCAACTAATACCACAACCACTGAAACTCATGGGATCGAAGTAGCAACAGAGTTT  385
            |||||  || |||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct  125  GCTCCTTCAGCTAACACCACAACCGCTGCAACTCATGGGATCGAAGTAGCAACAGAGTTT  184

Query  386  AAACCGGTGGATCACCCGATGGAGCCCTTAGACAACGATCAACCGATCCAATGTCCACTC  445
            |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct  185  AAACCGGTGGATCACCCGATGGAGCCTTTGGACAACGATCAACCGATCCAATGTCCACTC  244

Query  446  CCAGAGCCATCCATTCTCAATGACGGGAGACTCTGGAAAGAGAGAGTGTCGGCTTCTTCG  505
            || |||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||
Sbjct  245  CCGGAGCCATCCATTCTCAATGATGGGAGACTCTGGAAAGAGAGAGTGTCGGCTAATTCG  304

Query  506  ATGAGGAGACGAAG-TGATTTGGCTATTGTCCAAGATGGGATGGATGAAGAATCTGATGT  564
            ||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct  305  ATGAGGAGACG-AGATGATTTGGCGATTGCCCAAGATGGGATGGATGAAGAATCTGATGT  363

Query  565  TTCTGTGACGTCAATTCCATCGCGGACTAGCCAATGCAATACCAACCGTCCGATCTTGCC  624
            ||||||||   |||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct  364  TTCTGTGA---CAATTCCATCACGGGCTAGCCAATGCAATACCAACCGTCCTATCTTGCC  420

Query  625  TTCACTTAGTGCGCCGGAACACGACTTGCTTAATCTACTAGAAGAATGCAAAGTATCTGG  684
            |||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct  421  TTCACTCAGTGCGCCCGAACACAACTTGCTTAATCTACTAGAAGAATGCAAAGTATCTGG  480

Query  685  TAGTATCTAGCTAAGAACCTGCATGGATGGTCTA  718
            |||||||||   | ||||||||| ||||||||||
Sbjct  481  TAGTATCTA---A-GAACCTGCAGGGATGGTCTA  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28973416920


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5