BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35600.1 Length=1619 Score E Sequences producing significant alignments: (Bits) Value Ahg934177 jgi|Araly1|934177|scaffold_402165.1 1694 0.0 > Ahg934177 jgi|Araly1|934177|scaffold_402165.1 Length=1033 Score = 1694 bits (917), Expect = 0.0 Identities = 997/1035 (96%), Gaps = 8/1035 (1%) Strand=Plus/Plus Query 357 ACATAAAAAAGAGTGCAAAGATGTTTACTTGCATAAATTGCACTAAA-ATGGCAGACAGA 415 |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| Sbjct 1 ACATAAAAAAGAGTGCAAAGATGTTTACTTGCATAAATTGTAC-AAAGATGGCAGACAGA 59 Query 416 GGTGAGGAGGATGAAGAAGATGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCC 475 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 60 GGT---GAGGATGAAGAAGACGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCC 116 Query 476 GTTAAAAGCCTAACTACACAGATCAAAGATATGGCGTCGAAATTCTCAGGTTCTCATAAA 535 ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 117 GTTAAAAGCCTAACTACACAGATCAAAGACATGGCGTCGAAATTCTCAGGTACTCATAAA 176 Query 536 CAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTTCCGGATTTTGAC 595 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 177 CAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTCCCGGATTTTGAC 236 Query 596 ACTGCATCAGAGAGTGTTCCATACCCTTATCCTGGTGGAAGCACGAGCTCCACTCCTGCT 655 ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| ||| Sbjct 237 ACTGCATCAGAAAGTGTTCCATACCCTTATCCGGGTGGAAGCACGAGTTCCACTCCGGCT 296 Query 656 TGGGACTTACCAAGATCCTCCTACCATCAATCTGGACGGCCAGACTCAAGA-TTCACATC 714 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| Sbjct 297 TGGGACTTACCAAGATCCTCATACCATCAATCTGGACGGCCAGACTCAAGATTTC-CATC 355 Query 715 AATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAGGA 774 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 356 AATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAAGA 415 Query 775 TGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCTGGTGTTCATATCACATTTGTCTC 834 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 416 TGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCCGGTGTTCATATCACATTCGTCTC 475 Query 835 ACTTCCCAGTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAGGTTTTCGACAA 894 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 476 ACTTCCCACTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAAGTTTTCGACAA 535 Query 895 GTGGCAGGCTCAGAGGTGGTGGGGTGAGAACTATGACAGAATAGTTGAGCTTTACAATGT 954 |||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 536 GTGGCAGGCTCAAAGATGGTGGGGTGAGAACTACGACAGAATTGTTGAGCTTTACAATGT 595 Query 955 TCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAGTCGCAGAG 1014 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 596 TCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTATATCCGAGGACCAGTCGCAGAG 655 Query 1015 AGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGA 1074 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 656 AGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGA 715 Query 1075 CAACAACTTCAGACCACCAGGAGGCAGTGTCCCTCATCATTTTTATGGACCTCCAATGGA 1134 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 716 CAACAACTTCAGACCACCAGGAGGCAGTGTCCCACATCACTTTTATGGACCTCCAATGGA 775 Query 1135 CGCAGCAAGAATCACCACCTCATCGAGGGACGAACCGCCTTCAATGAGTAATGCTAGTGA 1194 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 776 CGCAGCAAGAATCACCACCTCATCGAGGGACGACCCGCCTTCCATGAGTAATGCTAGTGA 835 Query 1195 AATGCAAGGTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTT 1254 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 AATGCAAGCTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTT 895 Query 1255 ACCAGATGGAACTAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGT 1314 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 896 ACCCGATGGAACCAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGT 955 Query 1315 GCATGCCAAGACATGGTGGGAGCAGAACAGGGACAGAATACAAACCCAATACCTCTAAGA 1374 |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 956 GCATGCCAAGACATGGTGGGAGCAGAACAGAGATAGAATACAAACCCAATATCTCTAAGA 1015 Query 1375 GGACAAAAAACGAGA 1389 |||||||||| |||| Sbjct 1016 GGACAAAAAA-GAGA 1029 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60677760285 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5