BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35600.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934177 jgi|Araly1|934177|scaffold_402165.1 1694 0.0
> Ahg934177 jgi|Araly1|934177|scaffold_402165.1
Length=1033
Score = 1694 bits (917), Expect = 0.0
Identities = 997/1035 (96%), Gaps = 8/1035 (1%)
Strand=Plus/Plus
Query 357 ACATAAAAAAGAGTGCAAAGATGTTTACTTGCATAAATTGCACTAAA-ATGGCAGACAGA 415
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1 ACATAAAAAAGAGTGCAAAGATGTTTACTTGCATAAATTGTAC-AAAGATGGCAGACAGA 59
Query 416 GGTGAGGAGGATGAAGAAGATGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCC 475
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGT---GAGGATGAAGAAGACGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCC 116
Query 476 GTTAAAAGCCTAACTACACAGATCAAAGATATGGCGTCGAAATTCTCAGGTTCTCATAAA 535
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 117 GTTAAAAGCCTAACTACACAGATCAAAGACATGGCGTCGAAATTCTCAGGTACTCATAAA 176
Query 536 CAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTTCCGGATTTTGAC 595
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 177 CAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTCCCGGATTTTGAC 236
Query 596 ACTGCATCAGAGAGTGTTCCATACCCTTATCCTGGTGGAAGCACGAGCTCCACTCCTGCT 655
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 237 ACTGCATCAGAAAGTGTTCCATACCCTTATCCGGGTGGAAGCACGAGTTCCACTCCGGCT 296
Query 656 TGGGACTTACCAAGATCCTCCTACCATCAATCTGGACGGCCAGACTCAAGA-TTCACATC 714
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 297 TGGGACTTACCAAGATCCTCATACCATCAATCTGGACGGCCAGACTCAAGATTTC-CATC 355
Query 715 AATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAGGA 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 356 AATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAAGA 415
Query 775 TGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCTGGTGTTCATATCACATTTGTCTC 834
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 416 TGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCCGGTGTTCATATCACATTCGTCTC 475
Query 835 ACTTCCCAGTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAGGTTTTCGACAA 894
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 ACTTCCCACTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAAGTTTTCGACAA 535
Query 895 GTGGCAGGCTCAGAGGTGGTGGGGTGAGAACTATGACAGAATAGTTGAGCTTTACAATGT 954
|||||||||||| || ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 536 GTGGCAGGCTCAAAGATGGTGGGGTGAGAACTACGACAGAATTGTTGAGCTTTACAATGT 595
Query 955 TCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAGTCGCAGAG 1014
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 596 TCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTATATCCGAGGACCAGTCGCAGAG 655
Query 1015 AGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGA 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGA 715
Query 1075 CAACAACTTCAGACCACCAGGAGGCAGTGTCCCTCATCATTTTTATGGACCTCCAATGGA 1134
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 716 CAACAACTTCAGACCACCAGGAGGCAGTGTCCCACATCACTTTTATGGACCTCCAATGGA 775
Query 1135 CGCAGCAAGAATCACCACCTCATCGAGGGACGAACCGCCTTCAATGAGTAATGCTAGTGA 1194
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 776 CGCAGCAAGAATCACCACCTCATCGAGGGACGACCCGCCTTCCATGAGTAATGCTAGTGA 835
Query 1195 AATGCAAGGTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTT 1254
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AATGCAAGCTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTT 895
Query 1255 ACCAGATGGAACTAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGT 1314
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACCCGATGGAACCAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGT 955
Query 1315 GCATGCCAAGACATGGTGGGAGCAGAACAGGGACAGAATACAAACCCAATACCTCTAAGA 1374
|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 956 GCATGCCAAGACATGGTGGGAGCAGAACAGAGATAGAATACAAACCCAATATCTCTAAGA 1015
Query 1375 GGACAAAAAACGAGA 1389
|||||||||| ||||
Sbjct 1016 GGACAAAAAA-GAGA 1029
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5