BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35605.1
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482518 jgi|Araly1|482518|fgenesh2_kg.4__1578__AT2G35605.1 924 0.0
> Ahg482518 jgi|Araly1|482518|fgenesh2_kg.4__1578__AT2G35605.1
Length=672
Score = 924 bits (500), Expect = 0.0
Identities = 620/676 (92%), Gaps = 15/676 (2%)
Strand=Plus/Plus
Query 11 TTCAGTTTTCAAAGTCTGTGAGTTTGATCTAGGGTTTTAG--ACAGAGCTCTCTCTCCTT 68
||||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TTCAGCTTTCAAAGTCCGTG-GTTTGATCTAGGGTTTTAGACACAGAGCTCTCTCTCCTT 59
Query 69 CCAATTTCAAAACTGTGTGAAGAAG-AAAA-----A-A-TGTCGAGGGTTTTCGGAGCTT 120
|||| |||||||||||||||||||| |||| | | | || |||||||| |||||||
Sbjct 60 CCAAATTCAAAACTGTGTGAAGAAGAAAAATGGCGACAGTTTCTAGGGTTTTTGGAGCTT 119
Query 121 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCACCGGCGCTAAAACTGGTAGACAAGGTA 180
|||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||
Sbjct 120 GCAGGGTACTGATGGCGAAGGCCGCTTCTTCCTCCGGCGCCAAAAATGGTAGACAAGGTA 179
Query 181 CTGGCATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTAATTTTATTGGGGAAAACG 240
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 180 CTGGTATTCTTAAGGTGGTTCCCGTTTCGAAGCCGCTCGCTACCTTTATTGGGGAAAACG 239
Query 241 AAGTCTCTCGCACAACTGCCGTCAAGAAAATCTGGGAATATATCAAGCTTAACAATCTTC 300
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 240 AAGTCTCTCGCACAACCGCCGTCAAGAAAATCTGGGAATACATCAAGCTTAACAATCTTC 299
Query 301 AGAATCCGGTGAACAAAAGGGAGATACTATGCGATGAGCAACTCAAGACGATCTTCAGTG 360
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 300 AGAATCCGGAGAACAAAAGGGAGATACTATGCGATGAGCAACTGAAGACGATCTTCAGTG 359
Query 361 GGAAAGACACTGTCGGGTTCCTCGAGATTTCAAAACTTCTGTCTCAACATTTTCCTAAGT 420
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 360 GGAAAGACACTGTCGGGTTCCTCGAGATCTCGAAACTTCTGTCTCAACATTTTCCTAAGT 419
Query 421 CTGCTTGATTCCCACATTGCATTTTCCTTAGCTTCTATTACTATATCATCCAAGAAACGG 480
||||||||||| ||||||||||| |||||||||| | ||||| |||||||||||||| ||
Sbjct 420 CTGCTTGATTCTCACATTGCATTATCCTTAGCTTATTTTACTCTATCATCCAAGAAATGG 479
Query 481 TTCTTCtttttttGTATCTTTTTATGGGTGATCTTTATTGGTTATATATAGACTACCAGC 540
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 480 CTCTTCTTTTTTTGTATCTTCTTATGGGTGATCTTTATTGGTTATATATAGACTACCAAC 539
Query 541 CAGTTCCCATCTGTCTTAGACGGTTTATGTATGGATGATGGTTCAAAGTCAATTTAGCTA 600
|||||||||||||||| ||||| ||||||||| ||||||| | ||| |||||||||| |
Sbjct 540 CAGTTCCCATCTGTCTGAGACGTTTTATGTATTGATGATGATCCAAGGTCAATTTAGTTT 599
Query 601 ATGGTGGTTTGTG-TCTTGGAACTTTTTTATCTCTACTATAATCTTCTTCCATCTCAATA 659
||||| || ||| ||||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct 600 ATGGT--TT-GTGGTCTTGGAGCTTGTCTATCTCTACTATAATCTTCTTCGATCTCAATG 656
Query 660 TGGCATGGACTCCTTC 675
|| |||||||||||||
Sbjct 657 TGACATGGACTCCTTC 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24856141884
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5