BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35612.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934180 jgi|Araly1|934180|scaffold_402168.1 433 3e-121
> Ahg934180 jgi|Araly1|934180|scaffold_402168.1
Length=301
Score = 433 bits (234), Expect = 3e-121
Identities = 252/261 (97%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCTCGCGGTTGTTCAATCACAGTTTTGTTTCGCTTTCTTATAGTTCTTTTGGTG 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGTGTCTCGTGGTTGTTCAATCACAGTTTTGTTTCGCTTTCTTATAGTTCTTTTGGTG 80
Query 61 ATACAAGTACACTTTGAGAATACAAAAGCAGCTCGACATGCACCAGTTGTTTCGTGGTCA 120
||||||||||||||||||| ||||| ||||||||||||||| || |||||||| ||||||
Sbjct 81 ATACAAGTACACTTTGAGACTACAACAGCAGCTCGACATGCGCCGGTTGTTTCCTGGTCA 140
Query 121 CCACCTGAGCCGCCTAAGGATGATTTTGTGTGGTACCACAAGATCAACCGCTTCAAAAAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 141 CCACCTGAGCCGCCTAAGGATGATTTTGTGTGGTACCACAAGATCAACCGCTTCAAGAAC 200
Query 181 ATAGAACAAGATGCATTCCGACCAACCCACCAAGGTCCTAGTCAAGGTATTGGACACAAA 240
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 201 ATAGAACAAGATGCATTCCGACCAACCCACCAAGGTCCTAGTCAAGGTATCGGACACAAG 260
Query 241 AACCCTCCAGGTGCTCCTTAA 261
|||||||||||||||||||||
Sbjct 261 AACCCTCCAGGTGCTCCTTAA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9088806118
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5