BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35615.1
Length=1344
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934182 jgi|Araly1|934182|scaffold_402170.1 1923 0.0
Ahg951686 jgi|Araly1|951686|scaffold_107400001.1 449 2e-125
Ahg934224 jgi|Araly1|934224|scaffold_402212.1 429 2e-119
> Ahg934182 jgi|Araly1|934182|scaffold_402170.1
Length=1384
Score = 1923 bits (1041), Expect = 0.0
Identities = 1250/1351 (93%), Gaps = 14/1351 (1%)
Strand=Plus/Plus
Query 1 ATGGCAACCCAAAttcttctctgtttcttcctcttcttctcggt-gactctctcttcATC 59
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 21 ATGGCAACCCAAATTCTTCTCTGTTTCTTCCTCTTCTTCTC-GTCGACTCTCTCTTCATC 79
Query 60 GGGTCACCCAAAAAACTTCAGTGTTGAGCTGATCCACCGTGACTCTCCCCTTTCCCCAAT 119
| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 80 GTCTCACCCTAAAAACTTGAGTGTTGAGCTGATCCACCGTGACTCTCCCCTTTCCCCACT 139
Query 120 CTACAACCCACAAATCACCGTCACTGATCGCCTCAACGCTGCTTTCCTCCGCT-CAGTCT 178
||||||||| ||| ||| |||||||| ||||| ||||||||||||||||||| || |||
Sbjct 140 TTACAACCCAAAAAACACTGTCACTGACCGCCTTAACGCTGCTTTCCTCCGCTCCA-TCT 198
Query 179 CTCGTTCCCGCCGCTTCAACCACCA-ACTATCCCAAACCGATCTCCAATCCGGTTTAATC 237
|||||||||||||| |||| || || |||| |||||||||||||||||||||||||||
Sbjct 199 CTCGTTCCCGCCGCCTCAA-CAACATTTTATCTCAAACCGATCTCCAATCCGGTTTAATC 257
Query 238 GGAGCAGACGGCGAGTTTTTCATGAGTATCACCATCGGTACTCCACCAATAAAGGTTTTT 297
|||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 258 GGAGCAGATGGCGAGTTCTTCATGAGTATCACCATTGGTACTCCACCAATGAAGGTCTTT 317
Query 298 GCGATCGCTGACACAGGAAGTGACCTAACTTGGGTCCAATGTAAGCCTTGTCAACAATGT 357
|| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 318 GCCATCGCTGACACAGGAAGTGACCTAACCTGGGTCCAATGCAAACCTTGTCAACAATGC 377
Query 358 TACAAAGAAAACGGTCCAATCTTCGACAAGAAGAAATCCTCTACTTATAAGAGCGAGCCT 417
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 378 TACAAAGAAAACGGTCCAATCTTCGACAAGAAGAAATCCTCTACTTACAAGAGCGAGCCT 437
Query 418 TGTGACTCACGTAACTGCCAGGCCTTGTCCAGTACG-GAACGGGGATGCGATGAATCCAA 476
|||||||||||||||||||| |||||||| |||| | ||||| |||||||| ||||||||
Sbjct 438 TGTGACTCACGTAACTGCCACGCCTTGTCGAGTA-GCGAACGTGGATGCGACGAATCCAA 496
Query 477 CAATATATGCAAGTACCGTTACTCTTACGGTGATCAGTCGTTCAGCAAAGGAGACGTTGC 536
||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 497 AAATGTATGCAAGTACCGTTACTCGTACGGTGACCAGTCGTTCAGCAAAGGAGACGTTGC 556
Query 537 CACGGAAACTGTCTCTATTGACTCTGCTTCAGGGTCCCCTGTTTCTTTTCCTGGTACTGT 596
||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 557 CACGGAAACCATCTCTATCGACTCTGCTTCAGGGTCCCCTGTTTCTTTCCCTGGTACCGT 616
Query 597 CTTCGGTTGTGGCTACAATAACGGTGGTACCTTCGACGAGACTGGTTCTGGGATTATCGG 656
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||
Sbjct 617 TTTCGGTTGCGGCTACAATAATGGTGGTACCTTCGACGAGACTGGTTCCGGGATCATAGG 676
Query 657 TCTAGGTGGTGGTCATTTATCACTAATCTCCCAGCTCGGTTCGTCGATTTCGAAGAAATT 716
||| |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 677 TCTCGGTGGTGGCCATCTATCTCTAATCTCCCAGCTCGGTTCGTCGATTTCGAAGAAATT 736
Query 717 TTCTTATTGCTTGTCTCACAAGTCAGCTACCACGAATGGCACAAGCGTCATAAACCTAGG 776
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CTCTTATTGCTTGTCTCACAAGTCAGCTACCACGAATGGCACAAGCGTCATAAACCTAGG 796
Query 777 CACTAACTCGATTCCTTCAAGTCTAAGCAAAGACTCCGGCGTGGTATCAACTCCGTTGGT 836
||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 797 CACCAACTCGATTCCTTCAAGTCTGAGCAAGGACTCCGGCGTGATATCAACTCCGTTGGT 856
Query 837 CGATAAAGAGCCTCTTACTTACTACTACTTGACGCTTGAAGCCATCTCCGTCGGGAAGAA 896
|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 857 CGATAAAGAGCCTCGTACTTACTACTACTTGACGCTCGAAGCCATCTCCGTCGGGAAAAA 916
Query 897 AAAGATTCCTTACACCGGAAGCTCGTATAACCCAAACGACG-ACGGAATACT-CTCGGAG 954
||||||||| ||||||||||||||||||||||||||||||| | ||||| || |||||||
Sbjct 917 AAAGATTCCGTACACCGGAAGCTCGTATAACCCAAACGACGGA-GGAAT-CTTCTCGGAG 974
Query 955 ACATCTGGAAACATCATCATCGACTCTGGAACGACACTGACCCTCCTCGAAGCTGGTTTC 1014
|| |||||||||||||||||||||||||||||||| ||||| |||||||| | ||||||
Sbjct 975 ACGTCTGGAAACATCATCATCGACTCTGGAACGACGCTGACACTCCTCGACTCAGGTTTC 1034
Query 1015 TTTGACAAATTTAGCTCGGCGGTGGAGGAATCAGTGACCGGAGCCAAGCGCGTGAGTGAT 1074
|||||||||||| || ||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 1035 TTTGACAAATTTGGCGCGGCGGTTGAGGAATTAGTGACCGGAGCTAAGCGCGTGAGTGAT 1094
Query 1075 CCACAAGGG-CTTTTGTCTCACTGTTTCAAATCCGGAAGTGCAGAGATCGGTTTGCCGGA 1133
||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CCACA-GGGACTTTTGTCACACTGTTTCAAATCCGGAAGTGCAGAGATCGGTTTGCCGGA 1153
Query 1134 GATAACGGTGCATTTCACGGGTGCAGATGTGAGGCTGAGTCCGATCAACGCATTCGTGAA 1193
||||||||||||||||||||| || |||||||| ||||||||||||||||| || |||||
Sbjct 1154 GATAACGGTGCATTTCACGGGCGCCGATGTGAGACTGAGTCCGATCAACGCGTTTGTGAA 1213
Query 1194 ACTGAGTGAAGACATGGTTTGCTTGAGTATGGTTCCGACCACCGAGGTTGCCATCTATGG 1253
| |||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1214 AGTGAGTGAAGATATGGTATGCTTGAGTATGGTTCCCACCACCGAGGTTGCCATCTATGG 1273
Query 1254 GAACTTTGCTCAGATGGATTTCCTAGTTGGGTATGACTTGGAGACGAGGACGGTGTCGTT 1313
||||||||||||||||||||| || |||||||||||||||||||| || || ||||||||
Sbjct 1274 GAACTTTGCTCAGATGGATTTTCTTGTTGGGTATGACTTGGAGACAAGAACAGTGTCGTT 1333
Query 1314 TCAACACATGGATTGCTCTGCGAATTTGTGA 1344
||||| ||||||||||||||| |||||||||
Sbjct 1334 TCAACGCATGGATTGCTCTGCAAATTTGTGA 1364
> Ahg951686 jgi|Araly1|951686|scaffold_107400001.1
Length=400
Score = 449 bits (243), Expect = 2e-125
Identities = 316/350 (90%), Gaps = 10/350 (3%)
Strand=Plus/Plus
Query 572 CCCCTGTTTCTTTTCCTGGT-ACTGTCTTCGGTTGTGGCTACAATAACGGTGGTACCTTC 630
||||||||||||| || | | || || ||||||||||||||||| ||||| |||||||||
Sbjct 28 CCCCTGTTTCTTTCCCCGTTAAC-GTTTTCGGTTGTGGCTACAACAACGGAGGTACCTTC 86
Query 631 GACGAGACTGGTTCTGGGATTATCGGT-CTAGGTGG-TGGTCATTTATCACTAATCTCCC 688
||||| |||||||||||||| |||||| || ||||| | |||| ||||||||||||| ||
Sbjct 87 GACGAAACTGGTTCTGGGATCATCGGTCCT-GGTGGCT-GTCAGTTATCACTAATCTTCC 144
Query 689 AGCTCGGTTCGTCGATTTCGAAGAAATTTTCTTATTGCTTGTCTCACAAGTCAGCTACCA 748
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 145 AGCTCAGTTCGTCGATTTCGAAGAAATTCTCTTATTGCTTGTCTCACAAGTCAGCTACCA 204
Query 749 CGAATGGCACAAGCGTCATAAACCTAGGCACTAACTCGATTCCTTCAAGTCTAAGCAAAG 808
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 205 CGAATGGCACAAGCGTCATAAACCTAGGCACCAGCTCGATTCCTTCAAGTCTAAGCAAAG 264
Query 809 ACTCCGGCGTGGTATCAACTCCGTTGGTCGATAAAGAGCCTCTTACTTACTACTACTTGA 868
|||| | ||| |||| ||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 265 GCTCCTGTGTGATATCGACTCCATTGGTCGATAAAGAGCCTCGTACTCACTACTACTTGA 324
Query 869 CGCTTGAA-GCC-ATCTCCGTCGGGAAGAAAAAGATTCCTTACACCGGAA 916
|||| ||| ||| | ||||| |||||||||||||||||| ||||||||||
Sbjct 325 CGCT-GAAAGCCCA-CTCCGACGGGAAGAAAAAGATTCCGTACACCGGAA 372
> Ahg934224 jgi|Araly1|934224|scaffold_402212.1
Length=511
Score = 429 bits (232), Expect = 2e-119
Identities = 320/361 (89%), Gaps = 12/361 (3%)
Strand=Plus/Plus
Query 564 TTCAGGGTCCCCTGTTTCTTTTCCTGGT-ACTGTCTTCGGTTGTGGCTACAATAACGGTG 622
||| ||| ||||||||||||| || | | || || |||||||| |||||||| ||||| |
Sbjct 122 TTCTGGGCCCCCTGTTTCTTTCCCCGTTAAC-GTTTTCGGTTGCGGCTACAACAACGGAG 180
Query 623 GTACCTTCGACGAGACTGGTTCTGGGATTATCGGT-CTAGGTGG-TGGTCATTTATCACT 680
||||||||||||| |||||||||||||| |||||| || ||||| | ||||||| |||||
Sbjct 181 GTACCTTCGACGAAACTGGTTCTGGGATCATCGGTCCT-GGTGGCT-GTCATTTCTCACT 238
Query 681 AATCTCCCAGCTCGGTTCGTCGATTTCGAAGAAATTTTCTTATTGCTTGTCTCACAAGTC 740
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 239 AATCTCCCAGCTCAGTTCGTCGATTTCGAAGAAATTCTCTTATTGCTTGTCTCACAAGTC 298
Query 741 AGCTACCACGAATGGCACAAGCGTCATAAACCTAGGCACTAACTCGATTCCTTCAAGTCT 800
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 AGCTACCACGAATGGCACAAGCGTCATAAACCTAGGCACCAACTCGATTCCTTCAAGTCT 358
Query 801 AAGCAAAGACTCCGGCGTGGTATCAACTCCGTTGGTCGATAAAGAGCCTCTTACTTACTA 860
|||||||||||| | ||| |||| ||||| ||||||||||||||||||| ||| ||||
Sbjct 359 AAGCAAAGACTCATGTGTGATATCGACTCCATTGGTCGATAAAGAGCCTCGTACACACTA 418
Query 861 CTACTTGACGCTTGAAGCC-AT--C--TCCGTCGGGAAGAAAAAGATTCCTTACACCGGA 915
|||||||||||| |||| | | |||| |||||||||||||||||| |||||||||
Sbjct 419 CTACTTGACGCTC-AAGCTTAAAGCCCTCCGACGGGAAGAAAAAGATTCCGTACACCGGA 477
Query 916 A 916
|
Sbjct 478 A 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284127523
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5