BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35635.1
Length=712
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482524 jgi|Araly1|482524|fgenesh2_kg.4__1584__AT2G35635.1 933 0.0
Ahg943307 jgi|Araly1|943307|scaffold_603851.1 148 4e-35
Ahg895629 jgi|Araly1|895629|Al_scaffold_0006_3625 148 4e-35
> Ahg482524 jgi|Araly1|482524|fgenesh2_kg.4__1584__AT2G35635.1
Length=610
Score = 933 bits (505), Expect = 0.0
Identities = 581/617 (94%), Gaps = 8/617 (1%)
Strand=Plus/Plus
Query 29 CCCATCGCACAGACCCCCCTAAGAATCCGAGAGAGAAGAAGAGATAATGCAGATCTTCGT 88
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCCGTCGCACAGACCCGCCTAAGAATCCGAGAGAGAAGAAGAGATAATGCAGATCTTCGT 60
Query 89 CAAAACCCTCACCGGCAAAACTATAACCCTAGAAGTTGAGAGCAGCGACACCATCGACAA 148
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 CAAAACCCTCACCGGCAAAACTATAACCCTAGAGGTTGAGAGCAGCGACACCATCGACAA 120
Query 149 TGTTAAAGCCAAAATCCAGGACAAAGAGGGCATACCACCTGATCAACAGAGGCTGATTTT 208
||| |||||||||||||||||||||||||| || |||||||||||||| |||||||||||
Sbjct 121 TGTCAAAGCCAAAATCCAGGACAAAGAGGGTATTCCACCTGATCAACAAAGGCTGATTTT 180
Query 209 TGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCTGATTACAACATCCAGAAAGAGTC 268
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 TGCTGGTAAGCAATTGGAAGATGGCCGGACCTTAGCCGATTACAACATCCAGAAAGAGTC 240
Query 269 TACTCTTCATCTTGTCCTCAGGCTCAGAGGTGGAACCATGATCAAGGTGAAGACACTCAC 328
|||||||||||||||| | ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 241 TACTCTTCATCTTGTCTTGAGGCTCAGAGGTGGAACCATGATCAAGGTCAAGACGCTCAC 300
Query 329 TGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATTGATCGGATCAAAGAACG 388
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 TGGAAAAGAAATCGAGATTGATATCGAACCAACCGACACTATTGATCGGATCAAGGAACG 360
Query 389 TGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTCATATATGCCGGAAAACA 448
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 361 GGTTGAAGAGAAAGAAGGCATCCCTCCTGTTCAACAAAGGCTCATCTATGCCGGGAAACA 420
Query 449 GCTTGCTGATGACAAAACGGCCAAAGATTATGCGATAGAGGGAGGCTCTGTTCTTCATTT 508
|||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 421 GCTTGCTGATGACAAAACGGCCAAAGATTACGCCATAGAGGGTGGCTCTGTTCTTCATTT 480
Query 509 GGTTCTTGCTCTTAGGGGTGGTCTTCTCTGATCTTAATAAATAAGCTTTTCAACAAACAT 568
||||||||||||||||||||||||||||| |||||| |||||||| || ||||||||||
Sbjct 481 GGTTCTTGCTCTTAGGGGTGGTCTTCTCTAATCTTA-TAAATAAGATT--CAACAAACAT 537
Query 569 CTTTTCCCTCACTATTGTCCTCCTTATGTGGAATTCATGACACACCAAA-ATTGCTATGG 627
| ||||||| ||||| ||||||| ||||||||||||||||| | ||| || | |||||
Sbjct 538 -TGTTCCCTCTCTATTTTCCTCCTAATGTGGAATTCATGACA-A--AAATATGGATATGG 593
Query 628 GAAATTGGAATATTATG 644
|||||| ||||||||||
Sbjct 594 GAAATTTGAATATTATG 610
> Ahg943307 jgi|Araly1|943307|scaffold_603851.1
Length=730
Score = 148 bits (80), Expect = 4e-35
Identities = 183/232 (79%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 75 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAA-ACTATAACCCTAGAAGTTGAGAGCAG 133
||||||||||||||||| || | ||||| ||| || || ||||| ||||| ||||||
Sbjct 477 ATGCAGATCTTCGTCAAGACTTTGACCGG-AAAGACCATCACCCTTGAAGTGGAGAGCTC 535
Query 134 CGACACCATCGACAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATACCAC-CT-GAT 191
||||||||| ||||| || || || || ||||||||||| || || || || | | ||
Sbjct 536 CGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTAT-CC-CTTTGGAC 593
Query 192 CAACAGAGGCTGATTTTTGCTGGTAAGCA-ATTGGAAGATGGCCGGACCTTAGCTGATTA 250
|| ||| | || || || ||||| ||||| || || ||||| || || || || |||||
Sbjct 594 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTT-GAGGATGGTCGCACTTTGGCCGATTA 652
Query 251 CAACATCCAGAAAGAGTCTACTCTTCATCTTG-TCCTCAGGCTCAGAGGTGG 301
||||||||||||||||||||||||||| |||| ||||| | ||| | |||||
Sbjct 653 CAACATCCAGAAAGAGTCTACTCTTCA-CTTGGTCCTCCGTCTCCGTGGTGG 703
> Ahg895629 jgi|Araly1|895629|Al_scaffold_0006_3625
Length=690
Score = 148 bits (80), Expect = 4e-35
Identities = 183/232 (79%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 75 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAA-ACTATAACCCTAGAAGTTGAGAGCAG 133
||||||||||||||||| || | ||||| ||| || || ||||| ||||| ||||||
Sbjct 457 ATGCAGATCTTCGTCAAGACTTTGACCGG-AAAGACCATCACCCTTGAAGTGGAGAGCTC 515
Query 134 CGACACCATCGACAATGTTAAAGCCAAAATCCAGGACAAAGAGGGCATACCAC-CT-GAT 191
||||||||| ||||| || || || || ||||||||||| || || || || | | ||
Sbjct 516 CGACACCATTGACAACGTGAAGGCTAAGATCCAGGACAAGGAAGGTAT-CC-CTTTGGAC 573
Query 192 CAACAGAGGCTGATTTTTGCTGGTAAGCA-ATTGGAAGATGGCCGGACCTTAGCTGATTA 250
|| ||| | || || || ||||| ||||| || || ||||| || || || || |||||
Sbjct 574 CAGCAGCGTCTCATCTTCGCTGGAAAGCAGCTT-GAGGATGGTCGCACTTTGGCCGATTA 632
Query 251 CAACATCCAGAAAGAGTCTACTCTTCATCTTG-TCCTCAGGCTCAGAGGTGG 301
||||||||||||||||||||||||||| |||| ||||| | ||| | |||||
Sbjct 633 CAACATCCAGAAAGAGTCTACTCTTCA-CTTGGTCCTCCGTCTCCGTGGTGG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26190443979
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5