BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35640.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345299 jgi|Araly1|345299|fgenesh1_pg.C_scaffold_4001641 1391 0.0
> Ahg345299 jgi|Araly1|345299|fgenesh1_pg.C_scaffold_4001641
Length=1014
Score = 1391 bits (753), Expect = 0.0
Identities = 935/1020 (92%), Gaps = 23/1020 (2%)
Strand=Plus/Plus
Query 10 GCTGATCCATCGAGTGGTGAACAGATAGTTATGAGAGAGTGCAGAAAAGGGAATTGGACA 69
||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||
Sbjct 4 GCTGATCCATCGAGTGGTGAACATATGGTTATGAGAGAGTATAGAAAAGGGAATTGGACA 63
Query 70 GTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACCAGAGGCGTGTACGG 129
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||
Sbjct 64 GTGAGTGAGACTTTGGTTCTCATAGAAGCCAAGAAGATGGACGACGAGAGACGTGTGCGG 123
Query 130 CGATCGGAAAAACAACCTGAAGGCAGAAACAAACCAGCAGAGCTCCGGTGGAAATGGATA 189
||||| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 124 CGATCAGAGAAACAACCGGAAGGCAGAAATAAACCAGCAGAGCTCCGGTGGAAGTGGATA 183
Query 190 GAGGAGTATTGCTGGAGAAGAGGATGTTACCGCAACCAGAATCAGTGCAACGATAAGTGG 249
||||||||||| ||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 184 GAGGAGTATTGTTGGAGAAGAGGATGTCAGAGGAACCAGAATCAGTGCAACGATAAGTGG 243
Query 250 GACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATCAAGGGTAGAATCG 309
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 244 GACAATCTCATGAGGGATTACAAGAAGATCAGAGAGTACGAGAGATTGAGGGTAGAATCG 303
Query 310 TCTTTTAACACC-GTCACTTCTTCCTCTTACTGGAAGATGGACAAGACTGAGAGGAAAGA 368
|||||||||||| | | ||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 304 TCTTTTAACACCAG-CTCTTCTTCCTCTTACTGGAAAATGGACAAGAGTGAGAGGAAAGA 362
Query 369 GAAGAACTTGCCGAGTAACATGTTGCCTCAGATATACGACG-TGTTGTCTGAGCTTGTTG 427
|||||||||||| |||||||||||| ||||||||||||||| | ||| ||||||||||||
Sbjct 363 GAAGAACTTGCCAAGTAACATGTTGTCTCAGATATACGACGCT-TTGGCTGAGCTTGTTG 421
Query 428 -ACAGAAAAACTCTTCCTTCCTCCTCCTCCGCCGCCGCCGCCGTAGGAAACGGTAACGGT 486
| ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 GA-AGAAAGACTCTTCCTTCCTCCTCCTCCGCCGCCG------TAGGAAACGGTAACGGC 474
Query 487 GGCCAGATCCTAAGAGTTTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAG 546
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 AGCCAGATCCTAAGAGTGTGCCAACAAAGTTTAGGATTTGTAGCTCCGATGATGGCTCAG 534
Query 547 CCGATGCATCAAATCCCGACTACTATAGTGTTATCTCT-TCCGCCACCACCGCCACAGTC 605
|||||||||||||||||||||||||| || |||||| | ||||||||| |||||||| ||
Sbjct 535 CCGATGCATCAAATCCCGACTACTATTGTATTATCT-TATCCGCCACCGCCGCCACAATC 593
Query 606 TCT-TAGCTTATCACTTCCTTCGCCGCCTCAACCTCCACCATCGTCTTCATTTCACGCTG 664
||| | |||||||||||||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 594 TCTAT-GCTTATCACTTCCTTCGCCGCCTCAACCTCCACCGTCGTCCTCATTTCACGTTG 652
Query 665 AGCCTATACCGCCCACAGTAGGTACATCATCGACAAAGCGAAGGA-GAACAACGCCGGGA 723
||||||||| ||||||||||| | ||| || ||||||||||| || |||||||||||
Sbjct 653 AGCCTATACAGCCCACAGTAGACAGATCGCCGGGAAAGCGAAGGAAGA-CAACGCCGGGA 711
Query 724 GAAACCACCGCTGGAGGAGAGAGGGAGGTAGAGGAGGATGCGGTTGGGGTGGCGTTGTCT 783
||||||||||| |||||||||||||||| |||||||| ||| |||||| |||||| |||
Sbjct 712 GAAACCACCGCCGGAGGAGAGAGGGAGGCAGAGGAGGTTGCCATTGGGGCGGCGTTATCT 771
Query 784 AGATGCACGTCTGTGATCACACAAGTGATaagagagaatgaggagggacaagagaggagg 843
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 772 AGATGCGCGTCTGTGATCACACAAGTGATAAGAGAGAGTGAGGAGAGACAAGAGAGGAGG 831
Query 844 cataaggaagtggtgaggctacaagagaggagaCTAAAGATTGAGGAATCAAAAACTGAA 903
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 832 CATAAGGAAGTGGTGAAGCTACAAGAGAGGAGACTAAAGATTGAGGAATCAAAAGCTGAG 891
Query 904 ATAAATAGACAAGGTATGAA-TGGTTTGGTAGACGCCATTAATCAACTCGCAAGCTCTAT 962
||||||||||||||||| || ||||||||| || ||||||||||||||||||| ||||||
Sbjct 892 ATAAATAGACAAGGTAT-AAGTGGTTTGGTGGATGCCATTAATCAACTCGCAACCTCTAT 950
Query 963 TCTTGCTTTGGCTTCTTCTTCTT---GCCATAATAATCGCAATCATCAAGGAGGTCCACC 1019
||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 951 TCTTGCTTTGGCTTCTTCTTCTTCTTGTCATAATAATCACAATCATCAAGGAGGTCCACC 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5