BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35660.1
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482529 jgi|Araly1|482529|fgenesh2_kg.4__1589__AT2G35660.1 2178 0.0
Ahg481889 jgi|Araly1|481889|fgenesh2_kg.4__949__AT2G29720.1 1775 0.0
> Ahg482529 jgi|Araly1|482529|fgenesh2_kg.4__1589__AT2G35660.1
Length=1423
Score = 2178 bits (1179), Expect = 0.0
Identities = 1357/1441 (94%), Gaps = 20/1441 (1%)
Strand=Plus/Plus
Query 39 ACACGGTCGTGGCCATGTCTGTTCTGCTTCCGATGTATCCTCTCCAATCCTT-GGCCAGA 97
||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1 ACACGGTCGTGGCCATGTCCGTTCTGCTTCCGATCTATCCTCTCCAATCCTTAGGCCA-A 59
Query 98 AGCAAGAGATTGTTTCCGATTCGAACCAGATCAAAACCGGTTTGTTTAGCACTGACCAAT 157
||||| |||| ||| ||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 60 AGCAACAGATGGTTCCCGGTTCGAACCAGATCAAAACCGGTGTGTTTAGCACTGACCAAT 119
Query 158 GCTCAAACAAACGGTGGTGACCAAGAGGAGAAAGTAGTGATTGTTGGCGCCGGGATTGGC 217
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 GCTCAAACAAACGGTGGTGACCAAGAGGAGAATGTAGTGATTGTTGGCGCCGGGATTGGC 179
Query 218 GGACTTGCCACTGCCGTTTCACTTCACAGGCTTGGAATCCGGTCGGTGGTGTTGGAGCAG 277
|||||| |||| |||||||| |||||| |||| |||||||||||||||||||||||||||
Sbjct 180 GGACTTACCACCGCCGTTTCTCTTCACCGGCTAGGAATCCGGTCGGTGGTGTTGGAGCAG 239
Query 278 GCAGAGTCGCTTCGTACTGGTGGAACATCACTGACGCTATTCAAGAATGGGTGGCGCGTT 337
|||||||||||||| || || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 240 GCAGAGTCGCTTCGGACCGGAGGAACATCGCTGACCCTATTCAAGAATGGGTGGCGCGTT 299
Query 338 CTTGACGCCATTTCCGTCGGGCCTCAACTCCGAACGCAGTTTCTTGAAATCGAAGGGATG 397
||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 CTTGATGCCATCTCCGTCGGGCCTCAACTCCGACCGCAGTTTCTTGAAATCGAAGGGATG 359
Query 398 GTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTCAAAGACGATGATCAA 457
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 360 GTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGCTCTTTCAAATTCAAAGACGAAGATCAA 419
Query 458 AGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTT 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTT 479
Query 518 CCTCCACAAACCATTCGGTTTTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGGT 577
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCTCCAGAAACCATTCGGTTCTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGGT 539
Query 578 GACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCACAGATTGTTATTGGTTGT 637
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 GACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTTATTGGTTGT 599
Query 638 GACGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGGC 697
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGGT 659
Query 698 CATTGCGCTTACCGTGGTCTTGGGTTCTATCCAAATGGACAGCCATTTCAGAAAAAGGTG 757
|||||||||| |||||| || ||||||| ||||||||| |||||||||||||| ||||||
Sbjct 660 CATTGCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGGCAGCCATTTCAGAACAAGGTG 719
Query 758 AACTACATATACGGTAAAGGGATTAGAGCTGGATATGTACCTGTATCTACAACAAAAGTC 817
|||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 720 AACTACATATACGGGAAAGGGCTTAGAGCTGGATATGTACCTGTATCTGCAACAAAAGTC 779
Query 818 TACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGGCCCAAAATTACGGATCCAGCGATC 877
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 780 TACTGGTTCATCTGTTTCAACAGGCCATCACTAGGGCCCAAAATTACGGATCCAGCTATC 839
Query 878 CTaaaaaaaCAAGCCAAAGAACTGGTTAGTACATGGCCAGAAGATCTGCAAAACCTCATC 937
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 840 CTAAAAAAACAAGCCAAAGAACTTGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCATC 899
Query 938 GATTTAACACCTGATGAAACTATCAGCAGAACTCCTCTAGTAGACCGGTGGCTATGGCCT 997
||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 900 GATCTAACACCTGATGAAACCATCAGCAGAACTCCTCTTGTAGACCGGTGGCTTTGGCCA 959
Query 998 GGCATTGCTCCTCCAGCATCAAAAGGACGAGTGGTTCTTGTTGGAGATGCTTGGCACCCA 1057
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 GGCATTGCTCCTCCAGCATCAAAAGGCCGAGTGGTTCTTGTTGGAGATGCTTGGCACCCA 1019
Query 1058 ATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTAGTTCTGGCA 1117
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1020 ATGACTCCAAATCTTGGACAAGGTGCTTGCTGTGCCTTGGAAGATTCAGTTGTTCTGGCC 1079
Query 1118 AATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAGTAG-CAATGGAATC 1176
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1080 AATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAG-AGGCAATGGAATC 1138
Query 1177 ATACGGGAGTGAGAGATGGTCTCGAGCATTCCCGTTGACAGTACGTGCAAACCTAGTTGG 1236
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1139 ATACGGGAGTGAGAGATGGTCTCGGGCATTCCCGTTGACAGTACGTGCAAACCTAGTCGG 1198
Query 1237 CGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATTAGAAACAATATTGTCATACC 1296
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1199 AGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATAAGAAACAATATTGTCATACC 1258
Query 1297 AAAGTTACTGAGGCTTGGACCAATGCTTGAACACACAAACTTTGAGTGTGAACCTCTCTT 1356
|||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1259 AAAGTTACTGAGACTCGGACCAATGCTGGAACACACAAACTTTGAGTGTGAACCTCTCTC 1318
Query 1357 TGTTTCTAAAAGCTGAATTTCGTATATATAGTGAGATCCATTGAATAGAGAGACTTGAAC 1416
|||||| ||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 1319 TGTTTCAAAAAGCTGAATTTCGTATATATAGTGAGATC--TTGAA--------C---AA- 1364
Query 1417 AATGTATAATCATAGGAACAATATAAACTCTGTGATTGAATGTAAAAGAATCATACAATG 1476
||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1365 --TGTATGATCAGAGGAACAATATAAACTCTGTGATTAAATGTTAAAGAATCATACAATG 1422
Query 1477 T 1477
|
Sbjct 1423 T 1423
> Ahg481889 jgi|Araly1|481889|fgenesh2_kg.4__949__AT2G29720.1
Length=1515
Score = 1775 bits (961), Expect = 0.0
Identities = 1233/1363 (90%), Gaps = 23/1363 (2%)
Strand=Plus/Plus
Query 46 CGTGGCCATGTCTGTTCTGCTTCCGATGTATCCTCTCCAAT-C--CTTGGCCAGAAGCAA 102
|||||| |||||| || ||| |||||| ||||||||||||| | |||||||||||||||
Sbjct 12 CGTGGCTATGTCTCTTGTGCGTCCGATCTATCCTCTCCAATCCTTCTTGGCCAGAAGCAA 71
Query 103 GAGATTGTTTCCGATTCGAACCA-GATCAAAACCGGTTTGTTTAGCACT--G-ACCA-AT 157
||||| ||||||| |||||| || || |||||||||||||||||||| | | |||| |
Sbjct 72 GAGATGGTTTCCGGTTCGAA-CAGGAACAAAACCGGTTTGTTTAGCAATGAGTACCAGA- 129
Query 158 GCTC-AAACAAACGGTGGTGACCAAGAGGAGAAAGTAGTGATTGTTGGCGCCGGGATTGG 216
|| | |||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 130 GC-CGAAACAAGCGGTGCTGACCGAGAGGAGAAAGTAGTGATTGTTGGCGGCGGGATTGG 188
Query 217 CGGACTTGCCACTGCCGTTTCACTTCACAGGCTTGGAATCCGGTCGGTGGTGTTGGAGCA 276
|||||||||||| |||||| | |||||| |||||||||||||||||||||||||||||||
Sbjct 189 CGGACTTGCCACCGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTGTTGGAGCA 248
Query 277 GGCAGAGTCGCTTCGTACTGGTGGAACATCACTGACGCTATTCAAGAATGGGTGGCGCGT 336
||||||||||||||| || || |||||||| |||||||||| ||||||||||||||| ||
Sbjct 249 GGCAGAGTCGCTTCGGACCGGAGGAACATCTCTGACGCTATCCAAGAATGGGTGGCGTGT 308
Query 337 TCTTGACGCCATTTCCGTCGGGCCTCAACTCCGAACGCAGTTTCTTGAAATCGAAGGGAT 396
|||||||| ||| ||||| || ||||||||||||| ||||||||||||||| ||||| |
Sbjct 309 TCTTGACGACATCTCCGTTGGACCTCAACTCCGAAAACAGTTTCTTGAAATCCAAGGGGT 368
Query 397 GGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTCAAAGACGATGATCA 456
|||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 369 GGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCCAATTTAAAGACAATGATCA 428
Query 457 AAGCCAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCT 516
|||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||
Sbjct 429 AAGCCAAGAAGTTCGGGCGGTGGAGAGACGAGTACTCTTGAAAACACTTGCAAGCCAGCT 488
Query 517 TCCTCCACAAACCATTCGGTTTTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGG 576
|||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 489 TCCTCCGCAAACCATTCGGTTTTCCTCAAAACTAGAAAGTATACAAAGCAATGTCAATGG 548
Query 577 TGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCACAGATTGTTATTGGTTG 636
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 549 TGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTTATAGGTTG 608
Query 637 TGACGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGG 696
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 609 TGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATACGTTGG 668
Query 697 CCATTGCGCTTACCGTGGTCTTGGGTTCTATCCAAATGGACAGCCATTTCAGAAAAAGGT 756
||| ||||| |||||| || ||||||| |||||||||||||||||||||| |||||||
Sbjct 669 TTATTCCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGACAGCCATTTCAGCAAAAGGT 728
Query 757 GAACTACATATACGGTAAAGGGATTAGAGCTGGATATGTACCTGTATCTACAACAAAAGT 816
||||||||||| ||||| |||| || |||||| |||||||||||||||||||||||||||
Sbjct 729 GAACTACATATTCGGTAGAGGGCTTCGAGCTGCATATGTACCTGTATCTACAACAAAAGT 788
Query 817 CTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGGCCCAAAATTACGGATCCAGCGAT 876
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 789 CTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGTCCCAAAATTACAGATCCAGCTAT 848
Query 877 CCTaaaaaaaCAAGCCAAAGAACTGGTTAGTACATGGCCAGAAGATCTGCAAAACCTCAT 936
||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 849 CCTAAGAAAACAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCAT 908
Query 937 CGATTTAACACCTGATGAAACTATCAGCAGA-ACTCCTCTAGTAGACCGGTGGCTATGGC 995
|||| ||||||||||||| | ||||||||| | |||||| |||||||||||| | ||||
Sbjct 909 CGATCTAACACCTGATGATGCAATCAGCAGAGA-TCCTCTTGTAGACCGGTGGGTTTGGC 967
Query 996 CTGGCATTGCTCCTCCAGCATCAAAAGGACGAGTGGTTCTTGTTGGAGATGCTTGGCACC 1055
||||||||||||||| |||||||||||| || || |||||||||||||||||||||||||
Sbjct 968 CTGGCATTGCTCCTCGAGCATCAAAAGGTCGGGTTGTTCTTGTTGGAGATGCTTGGCACC 1027
Query 1056 CAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTAGTTCTGG 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1028 CAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCAGTTGTTCTGG 1087
Query 1116 CAAATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAGTAGCAATGGAAT 1175
||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||
Sbjct 1088 CAAATAAACTTGCCACTGCAATGAATGGAGGGACCGAATCAATTGAAGGGGCAATGGAAT 1147
Query 1176 CATACGGGAGTGAGAGATGGTCTCGAGC-ATTCCCGTTGACAGTACGTGCAAACCTAGTT 1234
|||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||||
Sbjct 1148 CATATGGGAGTGAGAGATGGTCTC-AGGTATTCCGGTTGACAGTACTTGCAAACCTAGTT 1206
Query 1235 GGCGCACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATTAGAAACAATATTGTCA-T 1293
|| ||||||||| | ||| |||||||| ||||||||||||||| |||||||||||| |
Sbjct 1207 GGAAAACTTCTGCAGTCGGACAATCCTCTTGTGTGTTCCATTAGAGACAATATTGTCAGT 1266
Query 1294 ACCAAAGTTACTGAGGCT-T-GGACCAATGCTTGAACACACAAACTTTGAGTGTGAACCT 1351
| || | || | || | |||||||| || ||||||||||||||||||||||| |||
Sbjct 1267 GC-AATGGGACA-ATCCTCTCGGACCAATTCTGGAACACACAAACTTTGAGTGTGAGCCT 1324
Query 1352 CTCTTTGTTTCTAAAAGCTGAATTTCGTATATATAGTGAGATC 1394
|||| |||||| |||||||||| | || ||| ||||||||||
Sbjct 1325 CTCTATGTTTCAAAAAGCTGAACT--GTCTATGTAGTGAGATC 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55307035740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5