BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35680.1
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934191 jgi|Araly1|934191|scaffold_402179.1 1687 0.0
Ahg918667 jgi|Araly1|918667|Al_scaffold_0575_2 558 4e-158
> Ahg934191 jgi|Araly1|934191|scaffold_402179.1
Length=1056
Score = 1687 bits (913), Expect = 0.0
Identities = 1015/1063 (95%), Gaps = 11/1063 (1%)
Strand=Plus/Plus
Query 472 TCTTTAGATCTTTGACTGAGGAATATGTATATCAAAGAACTGACGGAAA-CG--GATGAG 528
||| ||||||||||||||||||||||||||||| ||||||||||||||| | || |||
Sbjct 1 TCTCTAGATCTTTGACTGAGGAATATGTATATCGAAGAACTGACGGAAAGGGAAGAGGAG 60
Query 529 GAGAAGAGGGAGAGATCGGTTGAGGATAACGTTGATGATGGAGATAAGGCGGTATTGGTG 588
|||||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||
Sbjct 61 GAGAAGGGGGAGAGATCGGTTGAGGATCACGTTGCTGATGGAGATAAGGCGATTTTGGTT 120
Query 589 AGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCAGAGGAAACGTGATTGTGTTGACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGT 180
Query 649 GCTTTGTTTTATCCTACTCTGGTTTACAACGTTGTTAGGAATAAGCTCGA-ATCTGAGTT 707
|| |||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 181 GCCTTGTTTTATCCTACTCTGATTTACAACGTTGTTAGGAATAAGCTCGAGA-CTGAGTT 239
Query 708 TCGCTGGTGGGATCGCGTGGCTGAGTTTATATTACTGGGAGCTGTTCCATTTCCATCTGA 767
||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TCGCTGGTGGGATCGAGTTGCTGAGTTTATATTACTGGGAGCTGTTCCATTCCCATCTGA 299
Query 768 TGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTCCACAGCTGAAAGAGCTCGGTGTTTGTGGAGTGATCACTCTGAATGAGCCATATGA 359
Query 828 AACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCTAC 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AACTTTGGTTCCATCGTCTCTCTACAAATCTTACTGCATTGACCACCTGGTGATTGCCAC 419
Query 888 AAGAGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCA 947
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAGGGATTATTGTTTTGCTCCTTCCATGGAAGCAATATGCCAAGCTGTAGAATTTATCCA 479
Query 948 TAGAAATGCTTCGCTTGGAAAGACGACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAG 1007
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TAGAAATGCTTTGCTTGGAAAGACTACTTATGTTCACTGCAAAGCGGGTCGGGGTCGCAG 539
Query 1008 CACAACTATTGTCATATGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATA 1067
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CACAACTATTGTCATTTGCTACTTGGTTCAACACAAAAACATGACACCTGAAGCAGCATA 599
Query 1068 TTCCTACGTGAGATCAATCAGGCCCAGGGTTCTTTTAGCAGCAGCCCAATGGAAGGCCGT 1127
| |||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 600 TGCCTACGTGAGGTCAATCAGGCCCAGGGTTCTATTAGCAGCCGCCCAATGGAAGGCCGT 659
Query 1128 TGTTGAGTACTACCATGTCAAGGTGCTGAATACTCAGAGTTGCTTAACTGATGCAACTTC 1187
|||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct 660 TGTTGAGTACTACCATGTCAAGGTGCTGAATACTAAGAGCTGCTTAACTGATACAACTTC 719
Query 1188 AGCTTTGATCCCGAGAAATGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGA 1247
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGCTTTGATCCCGAGAAACGTGAAGCAGGTTTGTTCTGGGAATGTAGTGGTGTTTGATGA 779
Query 1248 TGGGTCAATGGTTGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGATGACTCACG 1307
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 780 TGGGTCAATGGTGGTAGTCACCCACTCGGATCTAGAGGGCTATAATGATGGTGACTCACG 839
Query 1308 GTCACGGAGGTCAGTGAAAGTTAATGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAG 1367
| | || |||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 G--A-GG---TCAGTGAATGTTACTGGGAATGAGCTATGGGCGGCAGCTGCAGATCTGAG 893
Query 1368 CATGGTGTACAGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATATCGTGTCTGTG 1427
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 894 CATGGTGTACCGGGTGAAAGTGGTGGGGCAGGCTGCGATGGCGAGGATCTCGTGTCTGTG 953
Query 1428 GCTGGGCTTGCGTGAGGACCAAAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAG 1487
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 954 GCTAGGCTTGCGTGAGGACCACAAGCTTTCTGGGAAAAATCTTTCCATGGGAGGCATAAG 1013
Query 1488 CGTCGACATTTCTGTCTACTGATGATGATGGCGAAGAATGAAT 1530
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1014 CGTCGACATTTCCGTCTACTGATGATGATGGCGAAGAATGAAT 1056
> Ahg918667 jgi|Araly1|918667|Al_scaffold_0575_2
Length=387
Score = 558 bits (302), Expect = 4e-158
Identities = 347/368 (94%), Gaps = 6/368 (2%)
Strand=Plus/Plus
Query 496 ATGTATATCAAAGAACTGACGGAAA-CG--GATGAGGAGAAGAGGGAGAGATCGGTTGAG 552
||||||||| |||||||||| |||| | || ||||||||| |||||||||||||||||
Sbjct 1 ATGTATATCGAAGAACTGACAGAAAGGGAAGAGGAGGAGAAGGGGGAGAGATCGGTTGAG 60
Query 553 GATAACGTTGATGATGGAGATAAGGCGGTATTGGTGAGCAGAGGAAACGTGATTGTGTTG 612
||| |||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 61 GATCACGTTGCTGATGGAGATAAGGCGATTTTGGTTAGCAGAGGAAACGTGATTGTGTTG 120
Query 613 ACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCTTTGTTTTATCCTACTCTGGTT 672
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 121 ACTACAAAGAGGGCACTCGTTGGTGTTGGTGCTCGTGCCTTGTTTTATCCTACTCTGATT 180
Query 673 TACAACGTTGTTAGGAATAAGCTCGA-ATCTGAGTTTCGCTGGTGGGATCGCGTGGCTGA 731
|||||||||||||||||||||||||| | |||||||||||||||||||||| || |||||
Sbjct 181 TACAACGTTGTTAGGAATAAGCTCGAGA-CTGAGTTTCGCTGGTGGGATCGAGTTGCTGA 239
Query 732 GTTTATATTACTGGGAGCTGTTCCATTTCCATCTGATGTTCCACAGCTGAAAGAGCTCGG 791
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 240 GTTTATATTACTGGGAGCTGTTCCATTCCCATCTGATGTTCCACAGCTGAAAGAGCTCGG 299
Query 792 TGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTTTGTGGAGTGATCACTCTGAATGAGCCATATGAAACTTTGGTTCCATCGTCTCTCTA 359
Query 852 CAAA-TCT 858
|||| |||
Sbjct 360 CAAAGTCT 367
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67572094630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5