BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35700.1
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482537 jgi|Araly1|482537|fgenesh2_kg.4__1597__AT2G35700.1 861 0.0
Ahg493200 jgi|Araly1|493200|fgenesh2_kg.7__2633__AT4G16750.1 302 2e-81
> Ahg482537 jgi|Araly1|482537|fgenesh2_kg.4__1597__AT2G35700.1
Length=570
Score = 861 bits (466), Expect = 0.0
Identities = 548/585 (94%), Gaps = 15/585 (3%)
Strand=Plus/Plus
Query 1 ATGGAACGTGACGACTGCCGGAGATTTCAGGACTCGCCGGCGCAGACGACGGAGAGAAGA 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAACGTGACGACTGCCGGAGGTTTCAGGATTCGCCGGCGCAGACGACGGAGAGAAGA 60
Query 61 GTGAAATATAAACCAAAGAAGAAAAGAGCCAAAGATGATGATGATGAGAAAGTTGTTTCG 120
|||||| |||| |||||||||||||||| ||||||||||||||| | || ||||||||
Sbjct 61 GTGAAAAATAATCCAAAGAAGAAAAGAGGCAAAGATGATGATGA--A-AAGGTTGTTTCA 117
Query 121 AAGCATCCAAATTTTCGAGGTGTCAGAATGAGACAATGGGGAAAATGGGTGTCCGAAATC 180
|||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 118 AAGCATCCAACTTTCCGAGGTGTAAGAATGAGACAATGGGGAAAATGGGTGTCCGAAATC 177
Query 181 AGAGAGCCAAAAAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACGGCGGAGATGGCG 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AGAGAGCCAAAGAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACGGCGGAGATGGCG 237
Query 241 GCGCGTGCTCACGACGTGGCAGCTTTAGCCATCAAAGGCGGTTCTGCACATCTCAACTTC 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 238 GCGCGTGCTCACGACGTGGCGGCTTTAGCCATCAAAGGCGGTTCTGCACACCTCAACTTC 297
Query 301 CCGGAGCTCGCTTATCACCTCCCTAGACCAGCTAGTGCCGACCCTAAAGACATCCAAGCT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCGGAGCTCGCTTACCACCTCCCTAGACCAGCTAGTGCCGACCCTAAAGACATCCAAGCT 357
Query 361 GCCGCCGCCGCAGCTGCAGCCGCTGTGGCCATTGACATGGATGTAGAGACGTCTTCGCCG 420
||||||||||||||||| ||||| | | |||||||||||||||||||||||
Sbjct 358 GCCGCCGCCGCAGCTGCTGCCGC-------A---A--TGGATGTAGAGACGTCTTCGCCG 405
Query 421 TCGCCATCTCCCACAGTTACGGAAACGTCATCTCCGGCTATGATAGCACTCTCCGACGAC 480
||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 406 TCGCCGTCTCCCACTGTTACGGAAACGTCATCTCCGGCTATGACAGCACTATCCGAAGAC 465
Query 481 GCGTTCTCCGATCTTCCTGATCTCTTGCTCAACGTGAACCATAACATCGATGGCTTCTGG 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 466 GCGTTCTCCGATCTTCCTGATCTCTTGCTCAACGTGAACCATAACATCGACGGCTTCTGG 525
Query 541 GACTCTTTTCCCTATGAAGAACCCTTCCTCTCTCAAAGTTACTAG 585
|||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 526 GACTCTTTTCCCTACGAAGAACCCTTCCTCTCTCAAAGTTACTAG 570
> Ahg493200 jgi|Araly1|493200|fgenesh2_kg.7__2633__AT4G16750.1
Length=834
Score = 302 bits (163), Expect = 2e-81
Identities = 237/274 (86%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 109 AAAGTTGTTTCGAAGCATCCAAATTTTCGAGGTGTCAGAATGAGACAATGGGGAAAATGG 168
|||| |||||| ||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct 189 AAAGGTGTTTCTAAGCAACCAAACTTTCGTGGGGTCAGAATGAGACAATGGGGAAAATGG 248
Query 169 GTGTCCGAAATCAGAGAGCCAAAAAAGAAATCAAGAATCTGGCTCGGTACTTTCTCCACG 228
||||| ||||| ||||| |||| |||||||||||||||||||||||| |||||||| |||
Sbjct 249 GTGTCTGAAATTAGAGAACCAAGAAAGAAATCAAGAATCTGGCTCGGCACTTTCTCAACG 308
Query 229 GCGGAGATGGCGGCGCGTGCTCACGACGTGGCAGCTTTAGCCATCAAAGGCGGTTCTGCA 288
||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 309 CCGGAGATGGCGGCGCGTGCACACGACGTGGCGGCTTTAGCCATCAAGGGCGGCTCTGCT 368
Query 289 CATCTCAACTTCCCGGAGCTCGCTTATCACCTCCCTAGACCAGCTAGTGCCGACCCTAAA 348
|| || || ||||||||||||||||| || | || ||||| || || ||||||||||||
Sbjct 369 CACCTTAATTTCCCGGAGCTCGCTTACCATTTGCCGAGACCGGCAAGCGCCGACCCTAAA 428
Query 349 GACATCCAAGCTGCCGCCGCCGCAGCTGCAGCCG 382
|| || |||| || ||||| ||||| || ||||
Sbjct 429 GATATTCAAGAAGCAGCCGCAGCAGCAGCTGCCG 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21405285429
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5