BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35710.1
Length=1837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482539 jgi|Araly1|482539|fgenesh2_kg.4__1599__AT2G35710.1 2669 0.0
> Ahg482539 jgi|Araly1|482539|fgenesh2_kg.4__1599__AT2G35710.1
Length=1787
Score = 2669 bits (1445), Expect = 0.0
Identities = 1707/1827 (93%), Gaps = 43/1827 (2%)
Strand=Plus/Plus
Query 12 TAATGTTGTCATTGGCCAGTCGCCATTATACCTTTTTAACCCTTCACAGTCTCCCAGAAA 71
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAATGTTCTCATTGGCCAATCACCATTATACCTTTTTAACCCTTCACAGTCTCCCAGAAA 60
Query 72 CCTCCCTTTCTCTTTGATACATTCTCTGtatatatatatataCGCGTATGCGTTTACACA 131
||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 CCTCCCTCTCTCTTTGATACAGTCTCTG----TATATATATACGCGTATGCGTTTACACA 116
Query 132 TT-CTTTAAAAGTTTCAGATTCTAGATAAATTCTTTTCATTTGATTTGTTTTAGCAATTC 190
|| | | |||| | |||| || | ||| |||| || |||||
Sbjct 117 TTCCCTCAAAA-----AAATTC-AG----A-----TTC--TTGA-------TA--AATTC 150
Query 191 GGACATTGTACAGAGAAATCAAGAATGGATTTGCAGAGAGGCTTTGTGTTCTTGTCTTTG 250
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 151 GGACATTGTACAGAGAAATCAAGAATGGATTTGCTGAGAGGCTTTGTGTTCTTGTCTTTG 210
Query 251 GTTCTATCTTTTATGATAATCGAAACGACGGCGTATCGAGAGAGACAGCTGCTGCTGCTG 310
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 211 GTTCTATCTTTTATGATAATCGAAACGACGGCGTATCGAGAGAGACA---GCTGCTGCTG 267
Query 311 CAACCACCGCAAGAAACGGCGATAGATACCGCAAACGCGGTGGTGACGGTTCAAGATCGA 370
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 C-A--ACCGCAAGAAACGGCGATAGATACCGCAAACGCGGTGGTGACGGTTCAAGATCGG 324
Query 371 GGTTTGAAGACGCGGCGACCGGAGCATAAGAACGCATACGCAACGATGATGTACATGGGG 430
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 325 GGTTTAAAGACGCGGCGGCCGGAGCATAAGAACGCCTACGCAACGATGATGTACATGGGG 384
Query 431 ACGCCAAGAGACTACGAGTTCTACGTTGCGACACGTGTTTTGATCAGATCGTTGAGAAGT 490
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 385 ACGCCAAGAGACTACGAGTTCTACGTTGCTACTCGTGTTTTGATCAGATCGTTGAGAAGT 444
Query 491 CTTCACGTGGAAGCTGATCTCGTCGTCATCGCTTCTCTCGACGTTCCTCTCCGATGGGTT 550
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTCCACGTGGAAGCTGATCTTGTCGTCATCGCTTCTCTCGACGTTCCTCTCCGATGGGTT 504
Query 551 CAAACCTTGGAAGAGGAAGATGGAGCTAAAGTGGTGAGAGTTGAAAATGTGGATAATCCA 610
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 505 CAAACCTTGGAAGAGGAAGATGGAGCCAAAGTGGTGAGAGTTGAAAATGTGGATAATCCA 564
Query 611 TACAGGAGACAGACCAACTTCAACAGTAGATTCAAGCTTACTCTAAACAAGCTCTACGCT 670
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 565 TACAGGAGACAGACCAACTTCAACAGTAGATTCAAGCTTACACTGAACAAGCTCTACGCT 624
Query 671 TGGGCTTTGTCTGATTACGACCGTGTGGTCATGCTAGATGCCGATAACCTCTTTCTTAAG 730
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 625 TGGGCTTTGTCTGACTACGACCGTGTGGTCATGCTAGATGCCGATAACCTCTTCCTTAAG 684
Query 731 AAAGCCGACGAGTTGTTCCAGTGTGGGCGCTTCTGTGCGGTCTTCATTAACCCTTGTATC 790
||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 685 AAAACCGACGAGCTGTTCCAGTGCGGGCGCTTCTGTGCGGTCTTCATTAACCCTTGCATC 744
Query 791 TTCCACACTGGTCTCTTCGTGTTGCAGCCATCAGTGGAAGTGTTCAAGGACATGCTCCAT 850
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 745 TTCCACACTGGCCTCTTCGTGTTGCAGCCTTCAGTGGAGGTGTTCAAGGACATGCTCCAT 804
Query 851 GAGCTACAAGTTGGAAGAAAGAATCCTGATGGAGCTGATCAAGGTTTTCTTGTCAGTTAC 910
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 805 GAGCTACAAGTTGGAAGAAAGAATCCTGATGGAGCTGATCAAGGCTTTCTTGTCAGTTAC 864
Query 911 TTCTCTGATCTTCTTGACCAACCTCTCTTTAGTCCTCCGAGTAACGGATCTGTACTTAAT 970
|||||||||||||| ||||||||||||||| ||||||||||||| |||||||| ||| |
Sbjct 865 TTCTCTGATCTTCTAGACCAACCTCTCTTTCGTCCTCCGAGTAATGGATCTGTGCTTGGT 924
Query 971 GGTCACTTGAGACTTCCCTTAGGCTACCAAATGGACGCTTCTTATTTCTATCTTAAGCTA 1030
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 925 GGCCACTTGAGACTTCCCTTGGGCTACCAAATGGACGCTTCTTATTTCTATCTTAAGCTA 984
Query 1031 AGATGGAACATACCCTGTGGACCAAACAGTGTGATTACATTCCCGGGAGCTGTTTGGTTA 1090
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 985 AGATGGAACATACCCTGTGGACCAAACAGTGTGATTACATTCCCAGGAGCTGTTTGGTTA 1044
Query 1091 AAGCCATGGTACTGGTGGTCATGGCCTGTTCTTCCACTAGGTTTCTCATGGCACGAGCAG 1150
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1045 AAGCCATGGTACTGGTGGTCATGGCCTGTTCTTCCACTAGGTATCTCATGGCACGAGCAG 1104
Query 1151 CGTCGCGCCACTATAGGGTACTCAGCCGAAATGCCTTTGGTTATAATCCAAGCAATGTTT 1210
|| ||| ||||||||||||||||||| |||||||||||||| ||||| |||||| ||||
Sbjct 1105 CGCCGCACCACTATAGGGTACTCAGCAGAAATGCCTTTGGTCATAATTCAAGCAGTGTTC 1164
Query 1211 TACCTTGGAATCATAGTGGTTACACGACTAGCTCGTCCTAACATAACCAAGCTATGTTAT 1270
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1165 TACCTTGGAATCATACTGGTCACACGACTAGCTCGCCCTAACATAACCAAGCTATGTTAT 1224
Query 1271 CGCCGCTCTGACCGCAACTTAACAACGATCCAAGCTGGTTTTAAGTTGATCGCGCTTCTC 1330
||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 1225 CGCCGCTCTGACCGCAACTTAACAACGATCCAAGCAGGTTTTAAGTCGGTCGCGCTTCTC 1284
Query 1331 TCTGTAGTTGCAGCCTACATCTTCCCATTCTTCACCATCCCTCACACTATCCACCCACTC 1390
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1285 TTTGTAGTTGCAGCCTACATCTTCCCATTCTTCACCATCCCTCACACCATCCACCCACTC 1344
Query 1391 ATCGGCTGGTCGCTCTACTTGATGGCTTCTTTTGCTCTCTCTTCCATTTCAATCAACACT 1450
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1345 ATCGGCTGGTCGCTCTACTTGATGGCTTCTTTTGCTCTCTCCTCCATTTCAATCAACACT 1404
Query 1451 CTCCTCCTCCCAACGCTCCCTGTTCTCACTCCATGGCTAGGAATTCTCGGCACTCTCCTT 1510
|||||||||||||| ||||||||||||||||||||||| || |||||||| || || ||
Sbjct 1405 CTCCTCCTCCCAACACTCCCTGTTCTCACTCCATGGCTCGGCATTCTCGGGACGCTTCTC 1464
Query 1511 GTCATGGCCTTCCCTTGGTACCCTGATGGAGTGGTCAGAGCCTTGTCAGTTTTCGCATAC 1570
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1465 GTCATGGCCTTCCCTTGGTACCCTGATGGAGTGGTCAGAGCCTTGTCGGTTTTCGCATAC 1524
Query 1571 GCATTTTGTTGCGCACCCTTTGTGTGGGTTTCATTCCGCAAAATCACATCGCACCTCCAG 1630
|| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1525 GCGTTTTGTTGCGCACCTTTTGTGTGGGTTTCATTCCGCAAGATCACATCGCACCTCCAG 1584
Query 1631 GTTTTGATTGAGAAAGAGGTGTTGTTCCCGCGATTGGGAGACTCAGGGGTCACTTCAGGC 1690
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 1585 GTTTTGATTGAGAAAGAGGTGTTGTTTCCGCGATTGGGAGATTCAGGGACCACTTCAGGC 1644
Query 1691 TTCAGCAAATTGTATTAGGGAGTCTTTATTTGACATATTGTTTCTCTGTATATAAAGGAT 1750
||||||||||||||||||| ||||||||||||||| ||||||| | | |||||||||||
Sbjct 1645 TTCAGCAAATTGTATTAGGCAGTCTTTATTTGACACATTGTTTATAT--ATATAAAGGAT 1702
Query 1751 TATTATTGTTTCATTCACATTACATTTATATCAACTCA-CTCTAACCTTCTTTCTTTTAC 1809
|||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||
Sbjct 1703 TATTATTGTTTCATTCACATTACATTTATATCAACTCAGC-CTAACCTTATTTCTTTAAC 1761
Query 1810 CTAGTCAA-AGTATCAATTTCGGTAGC 1835
||||| || ||||||||||||||||||
Sbjct 1762 CTAGT-AAGAGTATCAATTTCGGTAGC 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68981433695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5