BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35720.1
Length=1975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482541 jgi|Araly1|482541|fgenesh2_kg.4__1601__AT2G35720.1 3114 0.0
> Ahg482541 jgi|Araly1|482541|fgenesh2_kg.4__1601__AT2G35720.1
Length=1974
Score = 3114 bits (1686), Expect = 0.0
Identities = 1887/1983 (95%), Gaps = 17/1983 (1%)
Strand=Plus/Plus
Query 1 GACGAAGAAAA-AGAAAGAAGAATGGACTTGGGAATCAAGCAAGGGTCAAAGCGTCAACA 59
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1 GACGAA-AAAAGGGAAAGAAGAATGGACTTGGGAATCAAGCAAGGGTCAAAGCGTC-A-A 57
Query 60 AGCGAGCTAAAGCCGAGAGCAGCGGTGTCAAAAAACCTCATCCGCCGCAAAACCCCTAAA 119
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 58 AGCGAGCTAAAGCCGAGAGCAGCGGTGTC--AAAACCTCATCCGCCGCAAAACCCCTAAA 115
Query 120 ACCCTCCGGCACCGGAACTT-TCTCTTTCTTCTATCACTTTCCTTT-GACTGTCTCTATC 177
|||||||||| |||||| || |||||||||| |||| ||||||||| | |||||||| ||
Sbjct 116 ACCCTCCGGCGCCGGAAATTATCTCTTTCTTATATCCCTTTCCTTTCG-CTGTCTCTGTC 174
Query 178 GAGATTTCAATCACTGAATCGATTGAATCTTAAGCAATGATGGGCCAAGAAGCAGCTCCG 237
|||| ||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 175 GAGA-TTCAATCACCGAACCGATTGAATCTTACGCAATGATGGGCGAAGAAGCAGCTCCG 233
Query 238 ACGGGACCACCCAACAGAGAACTCTACGCGCTCCTGAATTTATCACCGGAGGCCTCCGAC 297
|||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 234 ACGGGACCTCCCAACAGAGAACTCTACGCGCTCCTGAATTTGTCACCGGAAGCCTCCGAC 293
Query 298 GAAGAAATCAGAAAAGCTTATCGTCAATGGGCTCAAGTTTATCACCCTGACAAGATCCAA 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 GAAGAAATCAGAAAAGCTTATCGTCAATGGGCTCAAGTTTATCACCCTGACAAGATACAA 353
Query 358 TCTCCTCAGATGAAGGAAGTAGCTACGGAGAATTTCCAACGGATATGTGAAGCATATGAG 417
|||||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||
Sbjct 354 TCTCCTCAGATGAAGGAAGTGGCTACTGAGAACTTCCAACGAATATGTGAAGCATATGAG 413
Query 418 ATATTGTCGGATGAGACTAAGAGGCTAATATATGACTTATATGGCATGGAAGGATTGAAT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 414 ATATTGTCGGATGAGACTAAGAGGCTAATATATGACTTATATGGCATGGAAGGCTTGACT 473
Query 478 TCAGGATTAGAGCTTGGTCCTAGGTTGAGTAAGGCTGATGAGATCAAAGAGGAGCTTGAA 537
|||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||
Sbjct 474 TCAGGATTAGAGCTTGGTCCTAGGCTGAGTAAGCCCGATGAGATCAAAGAGGAGCTTGAA 533
Query 538 AGGATTAAGAGGAGAAATGAAGAAGCTAAGAAGATGGCTCATTTTCAACCCACTGGTTCT 597
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 AGGATTAAGAGGAGAAATGAAGAAGCTAAGAAGATGGCACATTTTCAACCCACTGGTTCT 593
Query 598 ATTCTCTTCAATTTGTCTGTCCCACATTTTTTAGTAGGCGATGGCATCATGAGAGGAATG 657
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 594 ATTCTCTTCAATTTGTCTGTCCCAGATTTTTTAGGCGGCGATGGCATCATGAGAGGAATG 653
Query 658 GTTATGGCTAGTCAAGTGCAGTCTCAGTTGTCAAAAGATGATGCAATTGCCATTGGTGGA 717
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 GTTATGGCTAGTCAAGTGCAGTCTCAGTTGTCAAAAGATGATGCAATTGCTATTGGTGGA 713
Query 718 AATTTGGCGGCCAATGAAAAGTCTGGTGGCGGAGTCGCTACTGCCATACTGAGACGTCAG 777
|||||||| |||||||||||||||||||| ||| | ||||||||||| |||||||| |||
Sbjct 714 AATTTGGCTGCCAATGAAAAGTCTGGTGGTGGAATTGCTACTGCCATTCTGAGACGACAG 773
Query 778 ATTTCTCCAGTGTCATCCATAGAGTTTGTCGCTTCAAC-GGGTTTGCAGTCGCTTATTGG 836
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 774 ATTTCTCCAGTGTCATCCATAGAGTTTGTCGCTTCAACAGGG-TTGCAGTCGCTTATTGG 832
Query 837 AGTGCAGACAACACGTCAGTTAACCATACATTCAACTGCCACAATCAATATTTCAAAGTC 896
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 833 AATGCAGACAACACGTCAGTTAACCATACATTCAACTGCCACAATCAATATTTCGAAGTC 892
Query 897 TTTGAGTGATGGCTCCATCAATCTTACCAACACGTGGACTCGACAGCTTTCAGAAACTTC 956
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TTTGAGTGATGGTTCCATCAATCTTACCAACACGTGGACTCGACAGCTTTCAGAAACTTC 952
Query 957 AAGCGGAAATATTGAACTGGCACTGGGTATGCGATCAGCAATTACAGTTGGATGGAAAAA 1016
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 953 AAGCGGAAATATTGAACTGGCACTGGGTATGCGGTCAGCAATTACAGTTGGATGGAAAAA 1012
Query 1017 GAGAGACGAGAATGTATCTGCTGCTGGTGACTTTAAGATTGAATCTGGTGGACTCGGAGC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1013 GAGAGACGAGAATGTATCTGCTGCTGGTGACTTTAAGATTGAATCTGGTGCACTCGGAGC 1072
Query 1077 ATCAGCTCGTTATACTCGTAAACTTTCATCCAAATCTCATGGTCGCATTGTGGGTAGAAT 1136
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1073 ATCAGCTCGTTATACTCGTAAACTTTCATCCAAATCTCACGGTCGTATTGTAGGTAGAAT 1132
Query 1137 CGGAAGCAATGCTCTTGAGATTGAGCTCGGTGGTGGAAGGCAA-ATTTCTGAGTTCAGTA 1195
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1133 CGGAAGCAATGCTCTTGAGATTGAGGTCGGTGGTGGAAGG-AAGATTTCTGAGTTCAGTA 1191
Query 1196 CAGTAAGAATGATGTATACAGTAGGACTCAAGGGTATTTTCTGGAAAGTAGAGCTACACC 1255
| |||||||||||||||||| | ||| ||||||||||||| |||||| ||||||||||||
Sbjct 1192 CCGTAAGAATGATGTATACAATTGGAATCAAGGGTATTTTTTGGAAACTAGAGCTACACC 1251
Query 1256 GTGGTAGCCAAAAGCTGATTGTTCCCATTCTACTCTCCGCACATTTAGCTCCAGTATTTG 1315
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1252 GTGGTAGCCAAAAGCTGATTGTTCCCATTCTGCTCTCCTCACATTTAGCTCCAGTATTTG 1311
Query 1316 CAACTGGAGCATTCATTGTTCCAACATCTCTTTACTTTTTGTTAAAGAAATTTGTGGTGA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CAACTGGAGCATTCATTGTTCCAACATCTCTTTACTTTTTGTTAAAGAAATTTGTGGTGA 1371
Query 1376 AGCCATATTTGCTTAAAAGAGAAAAACAAAAGGCCTTGGAGAATATGGAGAAAACTTGGG 1435
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 AGCCATATTTGCGTAAAAGAGAAAAACAAAAGGCCTTGGAGAATATGGAGAAAACTTGGG 1431
Query 1436 GCCAGGTTGGGGAAGCAAGGGCAAGGGCTGAGAAAGCCCAGCAATTGCTACAAACCGTAG 1495
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GCCAGGTTGGGGAAGCAAGGACAAGGGCTGAGAAAGCCCAGCAATTGCTACAAACCGTAG 1491
Query 1496 CCACAAGGAAGAAAAACCGTCAAGTTGAAACAGATGGGCTCATAGTAACGAAAGCGTTGT 1555
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1492 CCACAAGGAAGAGAAACCGGCAAGTTGAAACAGATGGGCTCATAGTAACGAAAGCGTTGT 1551
Query 1556 ATGGTGACCCAAAAGCAATAGAGAGAAGAAACGAAGGAGTGGAAGGACTGGATTCGGGAG 1615
|||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1552 ATGGTGACCCAAAAGCGATAGAGAGAAGAGACGAAGGAGTGGAAGGAGTGGATTCGGGAG 1611
Query 1616 TCATTGACGTGACAGTGCCGATGAACTTCCTTGTGAGTGACTCAGGGCAGCTCAAGCTCC 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 TCATTGACGTGACAGTGCCGATGAACTTCCTTGTGAGTGACTCAGGGCAGCTCAAGCTCC 1671
Query 1676 ATGAGGGAGTGAAGAAATCAGGGATCATGGGTTTTTGCGATCCCTGTCCCGGCCAACCTA 1735
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1672 ATGAGGGAGTGAAGAAATCAGGGATCATGGGCTTTTGCGATCCCTGTCCCGGCCAACCTA 1731
Query 1736 AGCAGTTATACATTGCATACACTTACCATTCTCAGCCATTTGAGGTAATAGTTGGTGACT 1795
| |||||||||||||| || |||||||||||||| | || ||||||| ||||||||| |
Sbjct 1732 AACAGTTATACATTGCCTATACTTACCATTCTCAAACGTTGGAGGTAACAGTTGGTGATT 1791
Query 1796 ATGAAGAGCTGAGTATACCACAAGAAGGCCAGTGAGAGTATGAAAACGGTACTCTCCACT 1855
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1792 ATGAAGAGGTGAGTATACCACAAGAAGGCCAGTGAGAGTATGAAAACGTTACTCTCCACT 1851
Query 1856 TTGTTGTTTTTA-TTAATACGAACGAATGGCTTCTTTCGGGGATTTGTAACTCTTT--TA 1912
|||||||||||| |||||||||||||||||||||||| ||| ||||||||| ||| ||
Sbjct 1852 TTGTTGTTTTTAATTAATACGAACGAATGGCTTCTTTTGGGCATTTGTAACACTTACCTA 1911
Query 1913 CACATTCATTTCTTTCTCAATAAATTAAGCATTCTTGTTTGCCAAAAAATTTATGTAATC 1972
||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 1912 TACATTCATTTCTTTCTCAATAAATTAAGCATTCTTGTTTGCCATAAATTTTGGGTAATC 1971
Query 1973 GTG 1975
|||
Sbjct 1972 GTG 1974
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74237887505
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5