BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35730.1

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482542 jgi|Araly1|482542|fgenesh2_kg.4__1602__AT2G35730.1         617    2e-176


> Ahg482542 jgi|Araly1|482542|fgenesh2_kg.4__1602__AT2G35730.1
Length=422

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 397/426 (93%), Gaps = 10/426 (2%)
 Strand=Plus/Plus

Query  10   TAGATACATAAACAATATTTATACATAACATTTACAGCAAACTCGCCGGCTTGGCTCTGC  69
            ||||||| ||||| |||||||||||| ||||||| | ||||| |||||||||||||||||
Sbjct  1    TAGATACGTAAACTATATTTATACAT-ACATTTATATCAAACCCGCCGGCTTGGCTCTGC  59

Query  70   CGTGTGACGGCAATGAAGGAGCCAATGATGCGAAGGCGCACCCTCATGCTCTGCGAGAAA  129
            |||   ||||||||||||||||||||||||||  ||||||| |||||| |||||||||||
Sbjct  60   CGTCACACGGCAATGAAGGAGCCAATGATGCGGCGGCGCACACTCATGATCTGCGAGAAA  119

Query  130  CTCTCACTTCCATCGTTTCAAGTGATAGAGATAAACGCAGATGTGGGATGTG-TTGCTTG  188
            ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  120  CTCTCACTTCCGTCGTTTCAAGTGATAGAGATAAACGCAGATGTGGGATGTGTTTG-TTG  178

Query  189  TCAAGACAGAGTCTCTAA-GATTGTCTCCAAGATGACCGGAATCGAAGAGTACGTGGTTG  247
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  179  TCAAGACAGAGTCTC-AAGGATTGTCTCCAAGATGACCGGAATCGAAGAGTACGTGGTTG  237

Query  248  ATTTGAAGAAGAAGTTGGTCATGGCACGAGGTGACTTTAGGCCACGTTTGGTTTCTTCTC  307
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  ATTTGAAGAAGAAGCTGGTCATGGCACGAGGTGACTTTAGGCCACGTTTGGTTTCTTCTC  297

Query  308  A--A-CAACAAGTCAAGGACGTTGTCTCTCAAACTCCTTCTCAAAACGCCAAACGCCTTT  364
            |  | |||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  298  ATCAACAACAAGTCAAGGATGTTGTCTCTCAAACTCCTTCTCAAAATGCCAAACGCCTTT  357

Query  365  TGCGACCTCTAAAAATATTCCTTCGTTCCATTTTCTCTCTTTGTTTACGTCCAAC-TACA  423
            |||||||||||||  ||||||||||||||||||||| |||||||||||||||| | ||||
Sbjct  358  TGCGACCTCTAAATCTATTCCTTCGTTCCATTTTCTGTCTTTGTTTACGTCCA-CGTACA  416

Query  424  TTATAA  429
            ||||||
Sbjct  417  TTATAA  422



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18009438008


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5