BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35740.1 Length=1743 Score E Sequences producing significant alignments: (Bits) Value Ahg482546 jgi|Araly1|482546|fgenesh2_kg.4__1606__AT2G35740.1 2765 0.0 Ahg946614 jgi|Araly1|946614|scaffold_702843.1 878 0.0 > Ahg482546 jgi|Araly1|482546|fgenesh2_kg.4__1606__AT2G35740.1 Length=1743 Score = 2765 bits (1497), Expect = 0.0 Identities = 1663/1745 (95%), Gaps = 4/1745 (0%) Strand=Plus/Plus Query 1 ATGGTGGAAGAAGCATCGAAATCAGAGCAGATAAATATCACAGAGGTGTGGACGACGACA 60 |||| |||||||||| | ||| ||||| |||||||| ||||||||||||||||||| ||| Sbjct 1 ATGGGGGAAGAAGCAACAAAAACAGAGGAGATAAATTTCACAGAGGTGTGGACGACAACA 60 Query 61 TGGGAGACACCTTACATTATGCGGCTGGCTCTCTCTGCCGGTATTGGAGGACTCCTCTTC 120 |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 61 TGGGAGACCCCTTACATTATGCGGCTGGCTCTCTCGGCTGGTATTGGAGGACTCCTCTTC 120 Query 121 GGATACAACACGGGAGTCATCGCAGGGGCTCTTCTCTATATAAAAGAGGAGTTTGGTGAG 180 || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 121 GGGTACAACACGGGAGTCATCGCAGGGGCTCTTCTCTACATAAAAGAGGAGTTTGGTGAC 180 Query 181 GTAGACAACAAGACATGGCTTCAGGAGATCATTGTGAGCATGACCGTGGCTGGAGCCATT 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 181 GTAGACAACAAGACATGGCTCCAGGAGATCATTGTGAGCATGACCGTGGCTGGAGCCATT 240 Query 241 GTTGGAGCAGCTATAGGAGGATGGTACAACGATAAGTTTGGTAGGAGGATGTCTGTTCTT 300 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 241 GTTGGAGCAGCTATAGGAGGATGGTACAACGATAAGTTTGGTAGGAGGACGTCCGTTCTT 300 Query 301 ATAGCGGATGTGCTCTTCCTGCTGGGTGCCCTGGTGATGGTGATTGCTCATGCGCCGTGG 360 || || ||||||||||||||| |||||||||||||||||||| | ||||||||||| ||| Sbjct 301 ATTGCCGATGTGCTCTTCCTGGTGGGTGCCCTGGTGATGGTGGTCGCTCATGCGCCCTGG 360 Query 361 GTCATCATCCTCGGCAGACTCTTGGTGGGTTTTGGGGTTGGTATGGCTTCTATGACCTCA 420 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 361 GTCATCATCCTCGGCAGACTCTTAGTGGGTTTTGGGGTTGGTATGGCTTCCATGACCTCA 420 Query 421 CCGCTTTACATCTCTGAGATGTCTCCTGCGAGAATCAGAGGCGCCTTGGTCAGCACCAAC 480 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CCGCTTTACATATCTGAGATGTCTCCTGCGAGAATCAGAGGCGCCTTGGTCAGCACCAAC 480 Query 481 GGACTTCTCATCACCGGAGGACAGTTTCTATCTTATCTCATCAACCTTGCCTTCGTCCAT 540 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 481 GGACTTCTCATCACCGGAGGACAGTTTCTGTCTTATCTCATCAACCTCGCCTTTGTCCAT 540 Query 541 ACACCGGGTACATGGAGGTGGATGTTGGGAGTCTCGGCGATTCCAGCGATCATTCAGTTC 600 |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 541 ACACCGGGTACATGGAGGTGGATGTTGGGAGTCTCGGCGATTCCGGCAATCATTCAGTTC 600 Query 601 TGCCTCATGCTAACGCTGCCAGAGTCTCCACGGTGGCTCTATAGAAATGATAGGAAAGCC 660 || |||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 601 TGTCTCATGCTAACGCTACCAGAGTCTCCGCGGTGGCTCTACAGAAATGATAGGAAAGCC 660 Query 661 GAGTCAAGAGACATCCTCGAGAGAATATACCCGGCAGAGATGGTTGAAGCGGAGATAGCT 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GAGTCAAGAGACATCCTCGAGAGAATATACCCGGCAGAGATGGTTGAAGCGGAGATAGCT 720 Query 721 GCACTCAAGGAGTCTGTCCGGGCAGAGACGGCTGACGAGGATATTATCGGCCATACCTTC 780 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 721 GCACTCAAGGAGTCTGTCCTGGCAGAGACGGCCGACGAGGATATTATCGGCCATACCTTC 780 Query 781 TCTGATAAGCTCAGAGGCGCTCTCTCGAATCCAGTTGTCCGCCACGGTCTGGCCGCAGGT 840 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 781 TCCGATAAACTCAGAGGCGCTCTCTCGAATCCAGTTGTCCGCCACGGCCTGGCCGCAGGT 840 Query 841 ATCACCGTCCAGGTCGCCCAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCT 900 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 ATCACCGTCCAGGTCGCCCAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCC 900 Query 901 ACTATTCTGCAGTTTGCAGGTTACGCATCCAACAAGACAGCCATGGCTCTTGCTCTCATA 960 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 901 ACTATTCTGCAGTTTGCAGGTTATGCATCCAACAAGACAGCCATGGCTCTTGCTCTCATA 960 Query 961 ACCTCCGGTCTCAATGCAGTGGGGTCTGTAGTAAGCATGATGTTTGTAGACCGTTATGGT 1020 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 961 ACCTCCGGTCTCAATGCAGTGGGGTCGGTAGTAAGCATGATGTTTGTAGATCGTTATGGT 1020 Query 1021 CGGCGCAAGCTTATGATCATTTCCATGTTCGGGATCATAACTTGCCTTGTCATTTTGGCT 1080 |||||||||||||||||| |||||||||||||||||||| |||| ||| |||| |||||| Sbjct 1021 CGGCGCAAGCTTATGATCGTTTCCATGTTCGGGATCATATCTTGTCTTATCATATTGGCT 1080 Query 1081 GCCGTTTTCAATGAAGCCTCAAACCACGCTCCAAAGATCGATAAGAGAGACTCCAGAAAC 1140 ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1081 GCCGTCTTCAATGAAGCCTCAAACCACGCTCCCAAGATCGATAAGAGAGACTCCAGAAAT 1140 Query 1141 TTCGCAAAAAATGCTACTTGTCCCGCATTTGCCCCATTCACAGCCTCCCGTTCTCCTCCC 1200 || || ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1141 TTTGCTCGAAATGCTACTTGTCCCGCATTTGCCCCATTCACAGCCTCCCGTGCTCCTCCC 1200 Query 1201 TCCAACTGGAATTGTATGAAGTGTCTTCA-ATACGATTGCGGATTCTGCTCCAACGGAGC 1259 ||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1201 TCCAACTGGAACTGTATGAAGTGTCTT-AGATACGATTGCGGATTCTGCTCCAACGGAGC 1259 Query 1260 ACAGGAGTACGCACCTGGAGCATGCATTGTTCAGTCTGCTGATATGAAGGCATTGTGCCA 1319 ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1260 ACAGGAGTACGCACCTGGAGCCTGCGTTGTTCAGTCTGCTGATATGAAGGCATTGTGCCA 1319 Query 1320 CTCGAAAGGCAGAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCAT 1379 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 CTCTAAAGGCCGAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCAT 1379 Query 1380 TGTCTTCCTTGGCCTCTACATCATTGTGTACGCGCCCGGTATGGGCACAGTTCCATGGAT 1439 |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1380 CGTCTTCCTCGGGCTCTACATCATTGTGTACGCTCCCGGTATGGGCACAGTTCCATGGAT 1439 Query 1440 TGTCAACTCAGAGATCTATCCTCTTCGCTACAGAGGGCTCGCGGGAGGAATCGCTGCAGT 1499 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1440 TGTCAACTCAGAGATCTATCCTCTTCGCTACAGAGGGCTTGCGGGAGGAATCGCTGCAGT 1499 Query 1500 CTCAAACTGGATGTCAAATCTCGTAGTGAGTGAGACGTTCCTGACA-TTGACAAACGCAG 1558 ||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||| | Sbjct 1500 CTCAAACTGGATGTCGAATCTCGTCGTGAGTGAGACGTTCCTGACACTT-ACAAACGCGG 1558 Query 1559 TCGGGTCATCGGGAACATTCCTTCTATTTGCAGGGTCATCCGCAGTCGGGCTGTTCTTCA 1618 |||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||| Sbjct 1559 TCGGGTCATCAGGAACATTCCTTCTATTTGCAGGGTCCTCGGCAATCGGGCTGTTCTTCA 1618 Query 1619 TCTGGCTGCTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAAAAGTTGCTAG 1678 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| Sbjct 1619 TCTGGCTGCTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAGAAGTTGTTAG 1678 Query 1679 AAGGAGGGTTTAGGCCTAGTTTATTGCGGCCAACGACCAAGGAAAATCAAGTGGAAACGC 1738 |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||| Sbjct 1679 AAGGAGGGTTTAGGCCTAGTTTGTTGCGGCCGACGACCAGGGAAAATCAAGTGGAAACGC 1738 Query 1739 CTTAG 1743 ||||| Sbjct 1739 CTTAG 1743 > Ahg946614 jgi|Araly1|946614|scaffold_702843.1 Length=1789 Score = 878 bits (475), Expect = 0.0 Identities = 1296/1684 (77%), Gaps = 90/1684 (5%) Strand=Plus/Plus Query 38 TCACAGAGGTG-TGGACG-ACGACATGGGAGACACCTTACATTATGCGGCTGGCTCTCTC 95 |||| || ||| |||| | || |||||| ||||||||||||| ||| | ||||||||||| Sbjct 61 TCACTGA-GTGTTGGA-GAACAACATGGAAGACACCTTACATCATGAGACTGGCTCTCTC 118 Query 96 TGCCGGTATTGGAGGACTCCTCTTCGGATACAACACGGGAGTCATCGCAGGGGCTCTTCT 155 ||||| || ||||| || |||||||| ||| |||| |||||||| | ||||||||||| Sbjct 119 CGCCGGAATCGGAGGTCTTCTCTTCGGTTACGACACTGGAGTCATTTCCGGGGCTCTTCT 178 Query 156 CTAT-ATAAAAGAGGAGTTTGGTGAGGTAGACAACAAGACATGGCTTCAGGAGATC-ATT 213 || | || || ||||| |||| ||| || || || || ||||||||||| | | | ||| Sbjct 179 CT-TCATTAAGGAGGATTTTGATGAAGTTGATAAGAAAACATGGCTTCA-GTCAACTATT 236 Query 214 GTGAGCATGACCGTGGCTGGAGCCATTGTTGGAGCAGCTA-TAGGAGGATGGTA-CAACG 271 || || ||| | |||||||||||||| || |||||||| | | ||||| ||| | ||| | Sbjct 237 GTTAGTATGGCAGTGGCTGGAGCCATCGTCGGAGCAGC-AGTCGGAGGTTGG-ATCAATG 294 Query 272 ATAAGTTTGGTAGGAGGATGTCTG-TTCTTATAGCGGATGTGCTCTTCCTGCTGGGTGCC 330 ||| |||||||||||||||||| | ||||||| || ||||| || ||| || | ||||| Sbjct 295 ATAGGTTTGGTAGGAGGATGTC-GATTCTTATCGCTGATGTTCTTTTCTTGATCGGTGCG 353 Query 331 CTGGTGATGGTGA-TTGCTCATGCGCCGTGGGTCATCATCCTCGGCAGACTCTTGGTGGG 389 | ||||||| | |||||| || |||||||| ||||| | || ||| |||| || || Sbjct 354 ATTGTGATGG-CATTTGCTCCGGCTCCGTGGGTTATCATTGTTGGAAGAATCTTTGTTGG 412 Query 390 TTTTGGGGTTGGTATGGCTTCTATGACCTCACCGCTT-TACATCTCTG-AGATGTCTCCT 447 ||||| |||||||||||||| ||||| || ||| || |||||||||| || | ||||| Sbjct 413 ATTTGGTGTTGGTATGGCTTCGATGACGTCGCCG-TTGTACATCTCTGAAGCT-TCTCCG 470 Query 448 GCGAGAATCAGAGGCGC-CTTGGTCAGCACCAACGGACTTCTCATCACCGGAGGACAGTT 506 ||||| || ||||| || ||| || || ||||| || ||||||||||| |||||||| | Sbjct 471 GCGAGGATTAGAGGTGCACTT-GTTAGTACCAATGGTCTTCTCATCACTGGAGGACA-AT 528 Query 507 TC-TATCTTATCTCATCAACCTTGCCTTCGTCCATACACCGGGTACATGGAGGTGGATGT 565 || | ||||| |||||||| ||||| || |||||||| ||||| |||||||| ||||||| Sbjct 529 TCTTCTCTTACCTCATCAATCTTGCTTTTGTCCATACTCCGGGAACATGGAGATGGATGT 588 Query 566 TGGGAGTCT-CGGCG-ATTCCAGCGATCA-TTCAG-TTCTGCCTCATGCTAACGCTGCCA 621 |||| || | ||| | ||||||||||| | ||||| || || |||||| | |||| || Sbjct 589 TGGGTGT-TGCGG-GAATTCCAGCGAT-AGTTCAGTTTGTG-CTCATGTTGTCGCTACCT 644 Query 622 GAGTCTCCACGGTGGCTCTATAGAAATGATAGGAAAGCCGAGTCAAGAGAC-ATCCTCGA 680 ||||||||| ||||| | |||||||| || ||| || || || |||| | ||||| || Sbjct 645 GAGTCTCCAAGGTGGTTATATAGAAAGGACAGGGTTGCGGAATCCAGAG-CGATCCTTGA 703 Query 681 GAGAATATACCCGGCAGA-GATGGTTGAAGCGGAGATAGCTGCACTCAAGGAGTCTGTCC 739 ||| || |||||||| || || || || |||||||| | || | || |||| || Sbjct 704 GAGGATTTACCCGGCGGACGA-AGTGGAGGCGGAGATGGAAGCTTTGAAACAGTCAGT-G 761 Query 740 G-GGCAGAGACGGCTGACGAGG-ATATTATCGGCCATACCTTCTCTGATAAGCTCAGAGG 797 | |||||||| |||||||||| | || ||||| ||| |||| | | || | | ||| Sbjct 762 GAGGCAGAGAAAGCTGACGAGGCA-ATCATCGGAGATAGCTTCACCGCGAAAATGAAAGG 820 Query 798 CGCTCTCTC-G-AATCCAGTTGTCCGCCACGGTCTGGCCGCAGGTATCACCGTCCAGGTC 855 ||| | || | ||||| || || || | || || || || |||||||| || ||||| Sbjct 821 AGCT-T-TCGGAAATCCCGTCGTTCGACGTGGACTTGCTGCTGGTATCACAGTGCAGGTG 878 Query 856 GCCCAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCTACTATTCTGCAGTTT 915 || |||||||||||||| |||||||| |||||||||||||||||| | ||| |||| || Sbjct 879 GCACAGCAGTTTGTGGGGATCAACACTGTCATGTACTACAGTCCTTCAATTGTGCAATTC 938 Query 916 GCAGGTTACGCATCCAACAAGACAGCCATGGCTCTTG-CTCTCATAACCTCCGGTCTCAA 974 || |||||||| |||||||||||||| ||||| |||| ||||||| || || ||| | || Sbjct 939 GCTGGTTACGCCTCCAACAAGACAGCTATGGC-CTTGTCTCTCATTACTTCTGGTTTGAA 997 Query 975 TGCAGTGGGGTCTG-TAGTAAGCATGATGTTTGTAGACCGTTATGGTCGGCGCAAGCTTA 1033 ||| |||| || | | || |||||||||||||| || || || || | | ||||||| Sbjct 998 TGCCTTGGGTTC-GATTGTGAGCATGATGTTTGTCGATCGGTACGGGAGAAGGAAGCTTA 1056 Query 1034 TGATCATTTCCATGTTCGGGATCATAACTTGCCTTGTCATTTTGGCTGCCGT-TT-TCAA 1091 ||||||| || ||||| ||||||||||| || ||| |||| || || ||| || || | Sbjct 1057 TGATCATCTCTATGTTTGGGATCATAACATGTCTTATCATCTTAGCCATCGTGTTCTC-A 1115 Query 1092 TGAAGCCTCAAACCACGCTCCAAAGATCGATAAG-AGAGACTCCAGAAACTTCGCAAAAA 1150 |||| | | ||||| || ||||||||| | | || || || | || || || Sbjct 1116 -CAAGCGGCCATTCACGCCCCCAAGATCGATGCGCTG-GAGTCAAGGATGTTTGCTCCAA 1173 Query 1151 ATGCTACTTGTCCCGCATTTGCCCCAT-TCACAGCC--TCCCGTTCTCCTCCCTCCA-AC 1206 ||||||||||| | |||| |||||| | || ||||| || |||||||||| | | Sbjct 1174 ATGCTACTTGTTCAGCATATGCCCC-TCTCGCAGCCGAAAACG--CTCCTCCCTCGAGA- 1229 Query 1207 TGGAATTGTATGAAGTGTCTTCA-ATAC-GATTGCGGATTCTGCTCCAACGGAGCACAGG 1264 ||||| || |||||||||| ||| | | || || ||||||||| ||| ||||| |||| Sbjct 1230 TGGAACTGCATGAAGTGTC-TCAGGT-CTGAATGTGGATTCTGCGCCAGCGGAGTACAGC 1287 Query 1265 AGTACGCACCTGGAGCATGCAT--TGTTCAGTCTG-CTGATATGAAGGC-ATTGTGCCA- 1319 ||| ||||| |||||||| | |||| ||| | | || ||||| || | | || || Sbjct 1288 CGTATGCACCAGGAGCATGTGTGGTGTT--GTCGGAC-GAGATGAAAGCAACT-TG-CAG 1342 Query 1320 CTCGAA-AGGCAGAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCA 1378 ||| || ||| ||||| ||||||||||| ||||| || |||||||| |||| | | || | Sbjct 1343 CTC-AAGAGGAAGAACATTCTTCAAAGATGGATGTCCAAGCAAGTTTGGGTTCTTAGCAA 1401 Query 1379 TTGTCTTCCTT-GGCCTCTACATCATTGTGTACGCGCCCGGTATGGGCACAGTTCCATGG 1437 | || || || || || |||||| | || ||||| || ||||||||||| || || ||| Sbjct 1402 TAGTGTT-TTTGGGGCTTTACATCGTAGTCTACGCACCAGGTATGGGCACTGTCCCGTGG 1460 Query 1438 ATTGTCAACTCAGAGATCTATCCTCTTCGCTACAGAGGGCTCGCG-GGAGGAATCGCTGC 1496 || |||||||| ||||||||||| || | |||||||| || | | |||||||| || || Sbjct 1461 ATCGTCAACTCTGAGATCTATCCGCTAAGATACAGAGGTCTTG-GTGGAGGAATAGCCGC 1519 Query 1497 AGTCTCAAACTGGATGTCAAATCTCGTAGTGAGTGAGACG-TTCCTGACATTGACAAACG 1555 |||||||| ||| |||| |||||| | |||||||||| | ||||| || | || | | Sbjct 1520 CGTCTCAAATTGGGTGTCCAATCTCATTGTGAGTGAGA-GTTTCCTCTCACTCACCCATG 1578 Query 1556 CAGTCGGGTCATC-GGGAACATTCCTTCTATTTGCAGG-GTCATCCGCAG-TCGGGCTGT 1612 | | || || || ||| || |||||||| ||||| || || ||| | | ||||||| | Sbjct 1579 CTCTTGGCTCCTCTGGG-ACCTTCCTTCTCTTTGCTGGCTTC-TCCAC-GATCGGGCTCT 1635 Query 1613 TCTTCATCTGGCTGCTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAAAAGT 1672 ||||||| |||||||| || ||||||||||||||||||||||||||||| || || |||| Sbjct 1636 TCTTCATTTGGCTGCTCGTTCCTGAGACCAAAGGGCTTCAGTTTGAGGAGGTAGAGAAGT 1695 Query 1673 TGCT 1676 |||| Sbjct 1696 TGCT 1699 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65400950665 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5