BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35740.1
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482546 jgi|Araly1|482546|fgenesh2_kg.4__1606__AT2G35740.1 2765 0.0
Ahg946614 jgi|Araly1|946614|scaffold_702843.1 878 0.0
> Ahg482546 jgi|Araly1|482546|fgenesh2_kg.4__1606__AT2G35740.1
Length=1743
Score = 2765 bits (1497), Expect = 0.0
Identities = 1663/1745 (95%), Gaps = 4/1745 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAAGAAGCATCGAAATCAGAGCAGATAAATATCACAGAGGTGTGGACGACGACA 60
|||| |||||||||| | ||| ||||| |||||||| ||||||||||||||||||| |||
Sbjct 1 ATGGGGGAAGAAGCAACAAAAACAGAGGAGATAAATTTCACAGAGGTGTGGACGACAACA 60
Query 61 TGGGAGACACCTTACATTATGCGGCTGGCTCTCTCTGCCGGTATTGGAGGACTCCTCTTC 120
|||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 61 TGGGAGACCCCTTACATTATGCGGCTGGCTCTCTCGGCTGGTATTGGAGGACTCCTCTTC 120
Query 121 GGATACAACACGGGAGTCATCGCAGGGGCTCTTCTCTATATAAAAGAGGAGTTTGGTGAG 180
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GGGTACAACACGGGAGTCATCGCAGGGGCTCTTCTCTACATAAAAGAGGAGTTTGGTGAC 180
Query 181 GTAGACAACAAGACATGGCTTCAGGAGATCATTGTGAGCATGACCGTGGCTGGAGCCATT 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTAGACAACAAGACATGGCTCCAGGAGATCATTGTGAGCATGACCGTGGCTGGAGCCATT 240
Query 241 GTTGGAGCAGCTATAGGAGGATGGTACAACGATAAGTTTGGTAGGAGGATGTCTGTTCTT 300
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 241 GTTGGAGCAGCTATAGGAGGATGGTACAACGATAAGTTTGGTAGGAGGACGTCCGTTCTT 300
Query 301 ATAGCGGATGTGCTCTTCCTGCTGGGTGCCCTGGTGATGGTGATTGCTCATGCGCCGTGG 360
|| || ||||||||||||||| |||||||||||||||||||| | ||||||||||| |||
Sbjct 301 ATTGCCGATGTGCTCTTCCTGGTGGGTGCCCTGGTGATGGTGGTCGCTCATGCGCCCTGG 360
Query 361 GTCATCATCCTCGGCAGACTCTTGGTGGGTTTTGGGGTTGGTATGGCTTCTATGACCTCA 420
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 361 GTCATCATCCTCGGCAGACTCTTAGTGGGTTTTGGGGTTGGTATGGCTTCCATGACCTCA 420
Query 421 CCGCTTTACATCTCTGAGATGTCTCCTGCGAGAATCAGAGGCGCCTTGGTCAGCACCAAC 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCGCTTTACATATCTGAGATGTCTCCTGCGAGAATCAGAGGCGCCTTGGTCAGCACCAAC 480
Query 481 GGACTTCTCATCACCGGAGGACAGTTTCTATCTTATCTCATCAACCTTGCCTTCGTCCAT 540
||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 481 GGACTTCTCATCACCGGAGGACAGTTTCTGTCTTATCTCATCAACCTCGCCTTTGTCCAT 540
Query 541 ACACCGGGTACATGGAGGTGGATGTTGGGAGTCTCGGCGATTCCAGCGATCATTCAGTTC 600
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 541 ACACCGGGTACATGGAGGTGGATGTTGGGAGTCTCGGCGATTCCGGCAATCATTCAGTTC 600
Query 601 TGCCTCATGCTAACGCTGCCAGAGTCTCCACGGTGGCTCTATAGAAATGATAGGAAAGCC 660
|| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 601 TGTCTCATGCTAACGCTACCAGAGTCTCCGCGGTGGCTCTACAGAAATGATAGGAAAGCC 660
Query 661 GAGTCAAGAGACATCCTCGAGAGAATATACCCGGCAGAGATGGTTGAAGCGGAGATAGCT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGTCAAGAGACATCCTCGAGAGAATATACCCGGCAGAGATGGTTGAAGCGGAGATAGCT 720
Query 721 GCACTCAAGGAGTCTGTCCGGGCAGAGACGGCTGACGAGGATATTATCGGCCATACCTTC 780
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 721 GCACTCAAGGAGTCTGTCCTGGCAGAGACGGCCGACGAGGATATTATCGGCCATACCTTC 780
Query 781 TCTGATAAGCTCAGAGGCGCTCTCTCGAATCCAGTTGTCCGCCACGGTCTGGCCGCAGGT 840
|| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 TCCGATAAACTCAGAGGCGCTCTCTCGAATCCAGTTGTCCGCCACGGCCTGGCCGCAGGT 840
Query 841 ATCACCGTCCAGGTCGCCCAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATCACCGTCCAGGTCGCCCAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCC 900
Query 901 ACTATTCTGCAGTTTGCAGGTTACGCATCCAACAAGACAGCCATGGCTCTTGCTCTCATA 960
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 901 ACTATTCTGCAGTTTGCAGGTTATGCATCCAACAAGACAGCCATGGCTCTTGCTCTCATA 960
Query 961 ACCTCCGGTCTCAATGCAGTGGGGTCTGTAGTAAGCATGATGTTTGTAGACCGTTATGGT 1020
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 961 ACCTCCGGTCTCAATGCAGTGGGGTCGGTAGTAAGCATGATGTTTGTAGATCGTTATGGT 1020
Query 1021 CGGCGCAAGCTTATGATCATTTCCATGTTCGGGATCATAACTTGCCTTGTCATTTTGGCT 1080
|||||||||||||||||| |||||||||||||||||||| |||| ||| |||| ||||||
Sbjct 1021 CGGCGCAAGCTTATGATCGTTTCCATGTTCGGGATCATATCTTGTCTTATCATATTGGCT 1080
Query 1081 GCCGTTTTCAATGAAGCCTCAAACCACGCTCCAAAGATCGATAAGAGAGACTCCAGAAAC 1140
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1081 GCCGTCTTCAATGAAGCCTCAAACCACGCTCCCAAGATCGATAAGAGAGACTCCAGAAAT 1140
Query 1141 TTCGCAAAAAATGCTACTTGTCCCGCATTTGCCCCATTCACAGCCTCCCGTTCTCCTCCC 1200
|| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1141 TTTGCTCGAAATGCTACTTGTCCCGCATTTGCCCCATTCACAGCCTCCCGTGCTCCTCCC 1200
Query 1201 TCCAACTGGAATTGTATGAAGTGTCTTCA-ATACGATTGCGGATTCTGCTCCAACGGAGC 1259
||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1201 TCCAACTGGAACTGTATGAAGTGTCTT-AGATACGATTGCGGATTCTGCTCCAACGGAGC 1259
Query 1260 ACAGGAGTACGCACCTGGAGCATGCATTGTTCAGTCTGCTGATATGAAGGCATTGTGCCA 1319
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1260 ACAGGAGTACGCACCTGGAGCCTGCGTTGTTCAGTCTGCTGATATGAAGGCATTGTGCCA 1319
Query 1320 CTCGAAAGGCAGAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCAT 1379
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTCTAAAGGCCGAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCAT 1379
Query 1380 TGTCTTCCTTGGCCTCTACATCATTGTGTACGCGCCCGGTATGGGCACAGTTCCATGGAT 1439
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1380 CGTCTTCCTCGGGCTCTACATCATTGTGTACGCTCCCGGTATGGGCACAGTTCCATGGAT 1439
Query 1440 TGTCAACTCAGAGATCTATCCTCTTCGCTACAGAGGGCTCGCGGGAGGAATCGCTGCAGT 1499
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1440 TGTCAACTCAGAGATCTATCCTCTTCGCTACAGAGGGCTTGCGGGAGGAATCGCTGCAGT 1499
Query 1500 CTCAAACTGGATGTCAAATCTCGTAGTGAGTGAGACGTTCCTGACA-TTGACAAACGCAG 1558
||||||||||||||| |||||||| ||||||||||||||||||||| || |||||||| |
Sbjct 1500 CTCAAACTGGATGTCGAATCTCGTCGTGAGTGAGACGTTCCTGACACTT-ACAAACGCGG 1558
Query 1559 TCGGGTCATCGGGAACATTCCTTCTATTTGCAGGGTCATCCGCAGTCGGGCTGTTCTTCA 1618
|||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||
Sbjct 1559 TCGGGTCATCAGGAACATTCCTTCTATTTGCAGGGTCCTCGGCAATCGGGCTGTTCTTCA 1618
Query 1619 TCTGGCTGCTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAAAAGTTGCTAG 1678
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1619 TCTGGCTGCTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAGAAGTTGTTAG 1678
Query 1679 AAGGAGGGTTTAGGCCTAGTTTATTGCGGCCAACGACCAAGGAAAATCAAGTGGAAACGC 1738
|||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||
Sbjct 1679 AAGGAGGGTTTAGGCCTAGTTTGTTGCGGCCGACGACCAGGGAAAATCAAGTGGAAACGC 1738
Query 1739 CTTAG 1743
|||||
Sbjct 1739 CTTAG 1743
> Ahg946614 jgi|Araly1|946614|scaffold_702843.1
Length=1789
Score = 878 bits (475), Expect = 0.0
Identities = 1296/1684 (77%), Gaps = 90/1684 (5%)
Strand=Plus/Plus
Query 38 TCACAGAGGTG-TGGACG-ACGACATGGGAGACACCTTACATTATGCGGCTGGCTCTCTC 95
|||| || ||| |||| | || |||||| ||||||||||||| ||| | |||||||||||
Sbjct 61 TCACTGA-GTGTTGGA-GAACAACATGGAAGACACCTTACATCATGAGACTGGCTCTCTC 118
Query 96 TGCCGGTATTGGAGGACTCCTCTTCGGATACAACACGGGAGTCATCGCAGGGGCTCTTCT 155
||||| || ||||| || |||||||| ||| |||| |||||||| | |||||||||||
Sbjct 119 CGCCGGAATCGGAGGTCTTCTCTTCGGTTACGACACTGGAGTCATTTCCGGGGCTCTTCT 178
Query 156 CTAT-ATAAAAGAGGAGTTTGGTGAGGTAGACAACAAGACATGGCTTCAGGAGATC-ATT 213
|| | || || ||||| |||| ||| || || || || ||||||||||| | | | |||
Sbjct 179 CT-TCATTAAGGAGGATTTTGATGAAGTTGATAAGAAAACATGGCTTCA-GTCAACTATT 236
Query 214 GTGAGCATGACCGTGGCTGGAGCCATTGTTGGAGCAGCTA-TAGGAGGATGGTA-CAACG 271
|| || ||| | |||||||||||||| || |||||||| | | ||||| ||| | ||| |
Sbjct 237 GTTAGTATGGCAGTGGCTGGAGCCATCGTCGGAGCAGC-AGTCGGAGGTTGG-ATCAATG 294
Query 272 ATAAGTTTGGTAGGAGGATGTCTG-TTCTTATAGCGGATGTGCTCTTCCTGCTGGGTGCC 330
||| |||||||||||||||||| | ||||||| || ||||| || ||| || | |||||
Sbjct 295 ATAGGTTTGGTAGGAGGATGTC-GATTCTTATCGCTGATGTTCTTTTCTTGATCGGTGCG 353
Query 331 CTGGTGATGGTGA-TTGCTCATGCGCCGTGGGTCATCATCCTCGGCAGACTCTTGGTGGG 389
| ||||||| | |||||| || |||||||| ||||| | || ||| |||| || ||
Sbjct 354 ATTGTGATGG-CATTTGCTCCGGCTCCGTGGGTTATCATTGTTGGAAGAATCTTTGTTGG 412
Query 390 TTTTGGGGTTGGTATGGCTTCTATGACCTCACCGCTT-TACATCTCTG-AGATGTCTCCT 447
||||| |||||||||||||| ||||| || ||| || |||||||||| || | |||||
Sbjct 413 ATTTGGTGTTGGTATGGCTTCGATGACGTCGCCG-TTGTACATCTCTGAAGCT-TCTCCG 470
Query 448 GCGAGAATCAGAGGCGC-CTTGGTCAGCACCAACGGACTTCTCATCACCGGAGGACAGTT 506
||||| || ||||| || ||| || || ||||| || ||||||||||| |||||||| |
Sbjct 471 GCGAGGATTAGAGGTGCACTT-GTTAGTACCAATGGTCTTCTCATCACTGGAGGACA-AT 528
Query 507 TC-TATCTTATCTCATCAACCTTGCCTTCGTCCATACACCGGGTACATGGAGGTGGATGT 565
|| | ||||| |||||||| ||||| || |||||||| ||||| |||||||| |||||||
Sbjct 529 TCTTCTCTTACCTCATCAATCTTGCTTTTGTCCATACTCCGGGAACATGGAGATGGATGT 588
Query 566 TGGGAGTCT-CGGCG-ATTCCAGCGATCA-TTCAG-TTCTGCCTCATGCTAACGCTGCCA 621
|||| || | ||| | ||||||||||| | ||||| || || |||||| | |||| ||
Sbjct 589 TGGGTGT-TGCGG-GAATTCCAGCGAT-AGTTCAGTTTGTG-CTCATGTTGTCGCTACCT 644
Query 622 GAGTCTCCACGGTGGCTCTATAGAAATGATAGGAAAGCCGAGTCAAGAGAC-ATCCTCGA 680
||||||||| ||||| | |||||||| || ||| || || || |||| | ||||| ||
Sbjct 645 GAGTCTCCAAGGTGGTTATATAGAAAGGACAGGGTTGCGGAATCCAGAG-CGATCCTTGA 703
Query 681 GAGAATATACCCGGCAGA-GATGGTTGAAGCGGAGATAGCTGCACTCAAGGAGTCTGTCC 739
||| || |||||||| || || || || |||||||| | || | || |||| ||
Sbjct 704 GAGGATTTACCCGGCGGACGA-AGTGGAGGCGGAGATGGAAGCTTTGAAACAGTCAGT-G 761
Query 740 G-GGCAGAGACGGCTGACGAGG-ATATTATCGGCCATACCTTCTCTGATAAGCTCAGAGG 797
| |||||||| |||||||||| | || ||||| ||| |||| | | || | | |||
Sbjct 762 GAGGCAGAGAAAGCTGACGAGGCA-ATCATCGGAGATAGCTTCACCGCGAAAATGAAAGG 820
Query 798 CGCTCTCTC-G-AATCCAGTTGTCCGCCACGGTCTGGCCGCAGGTATCACCGTCCAGGTC 855
||| | || | ||||| || || || | || || || || |||||||| || |||||
Sbjct 821 AGCT-T-TCGGAAATCCCGTCGTTCGACGTGGACTTGCTGCTGGTATCACAGTGCAGGTG 878
Query 856 GCCCAGCAGTTTGTGGGAATCAACACAGTCATGTACTACAGTCCTACTATTCTGCAGTTT 915
|| |||||||||||||| |||||||| |||||||||||||||||| | ||| |||| ||
Sbjct 879 GCACAGCAGTTTGTGGGGATCAACACTGTCATGTACTACAGTCCTTCAATTGTGCAATTC 938
Query 916 GCAGGTTACGCATCCAACAAGACAGCCATGGCTCTTG-CTCTCATAACCTCCGGTCTCAA 974
|| |||||||| |||||||||||||| ||||| |||| ||||||| || || ||| | ||
Sbjct 939 GCTGGTTACGCCTCCAACAAGACAGCTATGGC-CTTGTCTCTCATTACTTCTGGTTTGAA 997
Query 975 TGCAGTGGGGTCTG-TAGTAAGCATGATGTTTGTAGACCGTTATGGTCGGCGCAAGCTTA 1033
||| |||| || | | || |||||||||||||| || || || || | | |||||||
Sbjct 998 TGCCTTGGGTTC-GATTGTGAGCATGATGTTTGTCGATCGGTACGGGAGAAGGAAGCTTA 1056
Query 1034 TGATCATTTCCATGTTCGGGATCATAACTTGCCTTGTCATTTTGGCTGCCGT-TT-TCAA 1091
||||||| || ||||| ||||||||||| || ||| |||| || || ||| || || |
Sbjct 1057 TGATCATCTCTATGTTTGGGATCATAACATGTCTTATCATCTTAGCCATCGTGTTCTC-A 1115
Query 1092 TGAAGCCTCAAACCACGCTCCAAAGATCGATAAG-AGAGACTCCAGAAACTTCGCAAAAA 1150
|||| | | ||||| || ||||||||| | | || || || | || || ||
Sbjct 1116 -CAAGCGGCCATTCACGCCCCCAAGATCGATGCGCTG-GAGTCAAGGATGTTTGCTCCAA 1173
Query 1151 ATGCTACTTGTCCCGCATTTGCCCCAT-TCACAGCC--TCCCGTTCTCCTCCCTCCA-AC 1206
||||||||||| | |||| |||||| | || ||||| || |||||||||| | |
Sbjct 1174 ATGCTACTTGTTCAGCATATGCCCC-TCTCGCAGCCGAAAACG--CTCCTCCCTCGAGA- 1229
Query 1207 TGGAATTGTATGAAGTGTCTTCA-ATAC-GATTGCGGATTCTGCTCCAACGGAGCACAGG 1264
||||| || |||||||||| ||| | | || || ||||||||| ||| ||||| ||||
Sbjct 1230 TGGAACTGCATGAAGTGTC-TCAGGT-CTGAATGTGGATTCTGCGCCAGCGGAGTACAGC 1287
Query 1265 AGTACGCACCTGGAGCATGCAT--TGTTCAGTCTG-CTGATATGAAGGC-ATTGTGCCA- 1319
||| ||||| |||||||| | |||| ||| | | || ||||| || | | || ||
Sbjct 1288 CGTATGCACCAGGAGCATGTGTGGTGTT--GTCGGAC-GAGATGAAAGCAACT-TG-CAG 1342
Query 1320 CTCGAA-AGGCAGAACCTTCTTCAAAGACGGATGCCCCAGCAAGTTCGGGTACCTGGCCA 1378
||| || ||| ||||| ||||||||||| ||||| || |||||||| |||| | | || |
Sbjct 1343 CTC-AAGAGGAAGAACATTCTTCAAAGATGGATGTCCAAGCAAGTTTGGGTTCTTAGCAA 1401
Query 1379 TTGTCTTCCTT-GGCCTCTACATCATTGTGTACGCGCCCGGTATGGGCACAGTTCCATGG 1437
| || || || || || |||||| | || ||||| || ||||||||||| || || |||
Sbjct 1402 TAGTGTT-TTTGGGGCTTTACATCGTAGTCTACGCACCAGGTATGGGCACTGTCCCGTGG 1460
Query 1438 ATTGTCAACTCAGAGATCTATCCTCTTCGCTACAGAGGGCTCGCG-GGAGGAATCGCTGC 1496
|| |||||||| ||||||||||| || | |||||||| || | | |||||||| || ||
Sbjct 1461 ATCGTCAACTCTGAGATCTATCCGCTAAGATACAGAGGTCTTG-GTGGAGGAATAGCCGC 1519
Query 1497 AGTCTCAAACTGGATGTCAAATCTCGTAGTGAGTGAGACG-TTCCTGACATTGACAAACG 1555
|||||||| ||| |||| |||||| | |||||||||| | ||||| || | || | |
Sbjct 1520 CGTCTCAAATTGGGTGTCCAATCTCATTGTGAGTGAGA-GTTTCCTCTCACTCACCCATG 1578
Query 1556 CAGTCGGGTCATC-GGGAACATTCCTTCTATTTGCAGG-GTCATCCGCAG-TCGGGCTGT 1612
| | || || || ||| || |||||||| ||||| || || ||| | | ||||||| |
Sbjct 1579 CTCTTGGCTCCTCTGGG-ACCTTCCTTCTCTTTGCTGGCTTC-TCCAC-GATCGGGCTCT 1635
Query 1613 TCTTCATCTGGCTGCTTGTGCCTGAGACCAAAGGGCTTCAGTTTGAGGAAGTGGAAAAGT 1672
||||||| |||||||| || ||||||||||||||||||||||||||||| || || ||||
Sbjct 1636 TCTTCATTTGGCTGCTCGTTCCTGAGACCAAAGGGCTTCAGTTTGAGGAGGTAGAGAAGT 1695
Query 1673 TGCT 1676
||||
Sbjct 1696 TGCT 1699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65400950665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5