BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35760.1
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482547 jgi|Araly1|482547|fgenesh2_kg.4__1607__AT2G35760.1 1240 0.0
> Ahg482547 jgi|Araly1|482547|fgenesh2_kg.4__1607__AT2G35760.1
Length=947
Score = 1240 bits (671), Expect = 0.0
Identities = 844/925 (91%), Gaps = 21/925 (2%)
Strand=Plus/Plus
Query 1 GTAGCAACACACTCTAAAAGCAACAAAG--G----ATCCAA-CTAACAAACAACAAATCA 53
||||||| |||||||||||||||||||| | | |||| | ||| ||||||||||||
Sbjct 1 GTAGCAATACACTCTAAAAGCAACAAAGAAGCCAAAGCCAAGCCAACTAACAACAAATCA 60
Query 54 GTGTTTTTGTTTCTATCAACAGTCTCTCTGAAAATCTCACAAAGTTTTC--AT-CTTTT- 109
||||||||||||||| ||||||||||||||||||||||||||||| | || |||||
Sbjct 61 ACGTTTTTGTTTCTATCTACAGTCTCTCTGAAAATCTCACAAAGTTTCCATATACTTTTA 120
Query 110 AATAAGAAATCAAGTTTACGGACAGAGATGAGTTATTTGGGAGTCGGAGTTAGTCCCGGA 169
|||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 AATAAGAACTCAAATTTAGGGACAAAGATGAGTTATTTGGGAGTCGGAGTTAGTCCCGGA 180
Query 170 AACGTCTCCGGAAGTACTACCAAAATGAAGCTGATTGATCGGAAAGTGAGAGTCACGGAG 229
|||||| ||||||||| ||| |||||||||||||||||||||||||||||||| || |||
Sbjct 181 AACGTCACCGGAAGTAGTACTAAAATGAAGCTGATTGATCGGAAAGTGAGAGTGACAGAG 240
Query 230 TTGATTCTGAGGTGTTTGGTTTGTGTCCTT-GCTCTCGTCGCTGCGATTCTCATTGCTAC 288
||||||||||||||||||||||||| |||| ||||||||||||||| ||||| |||||||
Sbjct 241 TTGATTCTGAGGTGTTTGGTTTGTG-CCTTCGCTCTCGTCGCTGCGGTTCTCGTTGCTAC 299
Query 289 AGATGTTCAAGTGAGAGAGATTTTCATGATTCAGAAGAAAGCCAAATTCACCGACATGAA 348
|||||||||||| |||||||| |||| ||||||||||||||| |||||||||||||||||
Sbjct 300 AGATGTTCAAGTAAGAGAGATATTCACGATTCAGAAGAAAGCTAAATTCACCGACATGAA 359
Query 349 GGCGCTTGTGCTTTTGGTGGTCGTCAATGGCATAGCCGCGGGTTATTCTTTGGTTCAGGC 408
||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 GGCACTTGTGTTTTTGGTGGTCATCAATGGCATAGCCGCGGGTTATTCTTTGGTTCAGGC 419
Query 409 GGTTCGTTGCGTGGTGGGTTTGATGAAAGGAAGAGTTTTGTTTAGTAAGCCTCTGGCTTG 468
|||| ||||| ||||||||||| |||||||||| |||||| | ||| |||| ||||||||
Sbjct 420 GGTTTGTTGCTTGGTGGGTTTGGTGAAAGGAAGCGTTTTGCTCAGTGAGCCACTGGCTTG 479
Query 469 GGCCATTTTCTTCGGC-GATCAGGCAGTAGCATACTTGTGTGTGGCGGGGGTTGCAGCCG 527
||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 480 GGCCATTTTCTTC-GCTGATCAGGCGGTAGCATACTTGTGTGTGGCGGGTGTTGCAGCAG 538
Query 528 CGGCGCAGTCTGCGGCCTTTGCAAAGTTGGGTGAGCCAGAGCTTCAATGGATGAAAATTT 587
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||
Sbjct 539 CGGCGCAGTCTGCGGCCTTTGCAAAGCTGGGTCAGCCAGAGCTTCAGTGGATGAAGATTT 598
Query 588 GTAATATGTATGGGAAGTTTTGTAACCAAGTGGGTGAAGGAATTGCGAGCGCTTTGTTTG 647
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GTGATATGTATGGGAAGTTCTGTAACCAAGTGGGTGAAGGAATTGCGAGCGCTTTGTTTG 658
Query 648 CTTGCATTGGAATGGTTTTGATCTCTTGCATTTCGGCTTTCGGTGTCTTTCGTTTGTACG 707
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 659 CTTGCATTGGAATGGTTTTGATCTCTTGCATTTCGGCTTTCGGTGTTTTTCGTTTGTATG 718
Query 708 GCGGAAGCAAATC-TAGGCCAAGCTCACGGTGGTGAAGGCCTGTAGTGGTCTTGGACCAA 766
| ||| |||| | | ||| |||||||||||||||||||||| || ||||||||||||||
Sbjct 719 GTGGAT-CAAAACCTCGGCAAAGCTCACGGTGGTGAAGGCCTATACTGGTCTTGGACCAA 777
Query 767 CCTTGTTTGTGGAACCTCTATTAAATGTTGTGGTGTGT-GTCCTCTTATCTCTCAGTGTG 825
||||||||||||||||||| |||||||| ||||||||| || |||| |||||||||||||
Sbjct 778 CCTTGTTTGTGGAACCTCTGTTAAATGTCGTGGTGTGTTGTTCTCT-ATCTCTCAGTGTG 836
Query 826 TATACCG-CTATTACTTACTGTCATGATCTCAGCTGATCTATAAACATAATCATGACAAT 884
||||||| |||||||| ||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 837 TATACCGTCTATTACT-ACTGTCATGATCTCAGCTGCTCTAGAAATGTAATCATGACAAT 895
Query 885 TATGGTTGTTTGATGTGAATAATTA 909
||||||||||| |||||||||||||
Sbjct 896 TATGGTTGTTTAATGTGAATAATTA 920
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 927 AAACCACAAACAATGACATGTTTAGTCT 954
||||||||||||||||||||||||||||
Sbjct 920 AAACCACAAACAATGACATGTTTAGTCT 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35454312810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5