BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G35765.1

Length=397
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg482548 jgi|Araly1|482548|fgenesh2_kg.4__1608__AT2G35765.1         604    1e-172


> Ahg482548 jgi|Araly1|482548|fgenesh2_kg.4__1608__AT2G35765.1
Length=395

 Score =  604 bits (327),  Expect = 1e-172
 Identities = 374/397 (94%), Gaps = 2/397 (1%)
 Strand=Plus/Plus

Query  1    AAATAGAAGAAGGAAGAATCTACGTTAACGGACAGGATCATGGAGAAGAAGGTGGCTTTG  60
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1    AAATAGAAGAAGGAAGAATCTACGTTAACGGACCGGATCATGGAGAAGAAGGTGGCTTTG  60

Query  61   GTGATGGCTTTGATGTTGCTTATGTCCGTGTTGGTTTCTGCCGAGGAAACACCAACCATC  120
            |||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||| |||
Sbjct  61   GTGATGGCTTTGATGTTGCTTATGTCGGTGTTGATTTCCGCCGAGGAAGCACCAACGATC  120

Query  121  GGACAGAGGATAGACTCAGCCGCAACCGACTTTACCAAATTCTTCGATGAACATGCCCGT  180
            ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct  121  GGACAGAGGATAGACTCAGCCACAACCGACTTTACCAAATTCTTCAATGAACATGCCCGT  180

Query  181  CCTGTCGTGGACTCCGTCTCCTCTACCGTCAAATCCGTCTACCACTGGTTTGGTGATAAA  240
            |||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  181  CCTGCCGTGGACTCTGTCTCCTCTACCGTCAAATCCGTCTACAACTGGTTTGGTGATAAA  240

Query  241  GCTAAGGAATGGGGACTCTAGAGATTTGTTTATGAGCGAAGAGGTTTGGAAAACATTTTC  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  241  GCTAAGGAATGGGGACTCTAGAGATTTGTTTATGAGCGAAGAGGTTTGGAAAGCATTTTC  300

Query  301  AGCCAATCAAGTTTGATCTCCATGTACTACTTTATTTTTAATTAATATTAAAAGAAAAAG  360
            ||| ||| |||||||||||||||||| ||| ||||||||||||||||| | |||||||  
Sbjct  301  AGCGAATAAAGTTTGATCTCCATGTATTACGTTATTTTTAATTAATAT-ATAAGAAAAT-  358

Query  361  ATGTATATTTGTCTTCTAATACGTAACAACTACACAC  397
            || |||||||||||||||||| | |||||||||||||
Sbjct  359  ATCTATATTTGTCTTCTAATAAGCAACAACTACACAC  395



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14232034697


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5