BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35770.1
Length=1552
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321290 jgi|Araly1|321290|fgenesh1_pm.C_scaffold_4001347 2084 0.0
> Ahg321290 jgi|Araly1|321290|fgenesh1_pm.C_scaffold_4001347
Length=1389
Score = 2084 bits (1128), Expect = 0.0
Identities = 1303/1390 (94%), Gaps = 2/1390 (0%)
Strand=Plus/Plus
Query 22 ATGATGATCACaaaaaaaCTATATCAATGTATGTGTTTATTATGCATGGTGATTGCATTA 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGATGATCACAAAAAAACTATATCAATGTATGTGTTTATTATGCATGGTGATTGCAATA 60
Query 82 TTAGACGTAGTGAGTAGTGATGATGCTAAAGAGCAAAAGATGAAGGACAAGATTATCTCT 141
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTAGACGTAGTGAGTAGTGATGATGCTAAAGAGCAAAAGATGAAGGACAAGATCATCTCT 120
Query 142 TTGCCAGGCCAACCTCCTAACCTCAACTTCTCTCAATTTTCTGGCTACGTCACTGTTGAT 201
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 TTGCCAGGGCAACCTCCTAACCTCAATTTCTCTCAATTCTCTGGCTACGTCACTGTTGAT 180
Query 202 CCCGCGGCCGGACGGGCTCTCTTTTATTGGCTAACCGAAGCTCCTAGGCCTAGCGGAACG 261
||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 TCCGCGGCTGGACGGAATCTTTTTTATTGGCTAACCGAAGCTCCTAGGCCCAGCGGTACG 240
Query 262 AAGCCCTTAGTCCTATGGCTCAATGGTGGTCCAGGATGCTCCTCTATTGCTTATGGTGCT 321
||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 241 AAGCCCTTAGTTCTATGGCTCAATGGTGGTCCAGGATGCTCCTCCATTGCCTACGGTGCT 300
Query 322 TCTGAAGAAGTTGGTCCATTTCGGGTTAATCCAGACGGAAAGACT-TTGCGTCTAAATCT 380
||||| |||||||||||||||||||||||||| || ||||||||| || ||| |||||||
Sbjct 301 TCTGAGGAAGTTGGTCCATTTCGGGTTAATCCCGATGGAAAGACTCTT-CGTTTAAATCT 359
Query 381 ATATGCTTGGAACAAAGTGGCAAATGTGTTATTTTTGGATTCACCGGCGGGAGTTGGTTT 440
||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 360 CTATGCTTGGAACAAAGTTGCAAATGTGTTATTTTTGGATTCACCGGCGGGTGTAGGTTT 419
Query 441 CTCTTACACAAACACTTCGTCAGACGAACTAACCGTGGGAGACAAGAGAACAGGGGAGGA 500
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 420 CTCTTACACAAACACTTCGTCAGACGAACTAACAGTGGGAGACAAGAGGGCAGGGGAGGA 479
Query 501 TGCTTATAGATTCTTGGTGAGATGGTTGGAGAGGTTCCCTGAGTATAAGGAACGGGCTTT 560
||| ||||||||||||||||||||| ||||||||||||||||||| |||||| | | ||
Sbjct 480 TGCATATAGATTCTTGGTGAGATGGATGGAGAGGTTCCCTGAGTACAAGGAAAGACCATT 539
Query 561 TTACATCGCCGGCGAGAGCTACGCTGGACATTATATTCCGGAGCTAGCCCAACTGATCGT 620
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 TTACATCGCCGGCGAGAGCTACGCTGGACATTATATTCCGGAGCTAGCTCAACTGATCGT 599
Query 621 CAACCGTAACAAAGGTGCCAAAAATCCAACTATCAATCTAAAAGGGATTCTGATGGGGAA 680
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 600 CAACCGTAACAAAGGTGCCCAAAACCCAACTATCAATCTAAAAGGGATTCTGATGGGGAA 659
Query 681 TCCTCTTGTCGATGACTACAATGACAACAAAGGAATGCGTGACTACTGGTGGAATCACGG 740
||| || || ||||| || |||||||||||||| |||||||||||||||||||| |||||
Sbjct 660 TCCCCTAGTGGATGATTATAATGACAACAAAGGGATGCGTGACTACTGGTGGAACCACGG 719
Query 741 GCTTATATCGGACGAAAGCTACAATGACCTGACCAAATGGTGTCTCAACGACTCCATCCT 800
||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 720 GCTTATATCCGACGAAAGCTACAAGGACCTGACCAAGTGGTGTCTCAACGACTCCATCCT 779
Query 801 ATTTCCAAAACTAAACTGCAACGCTGCTCTGAACCAAGCCTTGTCTGAGTTTGGTGACAT 860
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATTTCCCAAGCCCAACTGCAACGCTGCTCTGAACCAAGCCTTGTCTGAGTTTGGTGACAT 839
Query 861 TGACCCTTACAACATCAATAGCCCTGCATGCACCACGCATGCATCATCAAATGAGTGGAT 920
||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 840 CGACCCTTACAACATCAATAGCCCTGCATGCATCACACATTCATCATCAAATGAGTGGAT 899
Query 921 GCAAGCATGGCGGTATAGAGGGAACGATGAGTGTGTTGTGGGATACACACGCAAGTATAT 980
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 900 GCAAGCATGGCGGTATAGAGGGAATGATGAGTGTGTTGTGGGATATACACGCAAGTATAT 959
Query 981 GAACGATCCCAATGTGCACAAATCCTTCCATGCCCGTCTCAACGGCAGTACTCCTTGGAC 1040
|||||||| | ||||||||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 960 GAACGATCTCGATGTGCACAAATCTTTCCATGCCCGCCTCAACCGCAGTACTCCTTGGAC 1019
Query 1041 ACCTTGCAGTCGTGTGATAAGAAAGAATTGGAAAGACTCACCTAAGTCCATGCTTCCTAT 1100
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 CCCTTGCAGTCGTGTCATAAGAAAGAATTGGAAAGACTCACCTAAGTCCATGCTTCCCGT 1079
Query 1101 CATCAAGAATCTTCTTCAAGCTCATCTCCGCATTTGGATCTTCAGTGGGGACTCGGACGC 1160
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1080 CATCAAGAATCTTCTTCAAGCTCATCTCCGTATTTGGATCTTCAGTGGGGACTCGGACGC 1139
Query 1161 GGTGTTGCCTCTAAGCGGGACGAGGCATTCGATTAATGCAATGAAATTGAAGAGTAGCAA 1220
||||| || ||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1140 AGTGTTACCGCTAAGTGGGACAAGGCATTCGATAAATGCAATGAAATTGAAGAGTAGCAA 1199
Query 1221 AAGGTGGTATCCATGGTACCATTCACACGGCCTAGTAGGAGGTTGGAGTCAGGTTTATGA 1280
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 1200 AAGGTGGTATCCATGGTACCATTCACACGGCCTAGTTGGAGGTTGGAGCCAGGTTTACGA 1259
Query 1281 GGATGGCTTGCTAACGTACACGACGGTTAGAGCAGCAGGGCATGAGGTGCCATTGTCTCA 1340
||||| |||||||| ||| |||| |||||||| ||||||||||||||||||||||||||
Sbjct 1260 AGATGGTTTGCTAACTTACGCGACCGTTAGAGCCGCAGGGCATGAGGTGCCATTGTCTCA 1319
Query 1341 GCCTCGTCTCGCTCTTTTCCTCTTCACCCACTTCCTAGCCAACCACTCTCTTCCCTCCTC 1400
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1320 GCCTCGTCTCGCTCTTTTCCTCTTCACCCACTTTCTCGCCAACCACTCTCTTCCCTCCTC 1379
Query 1401 TCCCTCTTAA 1410
| ||||||||
Sbjct 1380 TTCCTCTTAA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58125713870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5