BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35770.1 Length=1552 Score E Sequences producing significant alignments: (Bits) Value Ahg321290 jgi|Araly1|321290|fgenesh1_pm.C_scaffold_4001347 2084 0.0 > Ahg321290 jgi|Araly1|321290|fgenesh1_pm.C_scaffold_4001347 Length=1389 Score = 2084 bits (1128), Expect = 0.0 Identities = 1303/1390 (94%), Gaps = 2/1390 (0%) Strand=Plus/Plus Query 22 ATGATGATCACaaaaaaaCTATATCAATGTATGTGTTTATTATGCATGGTGATTGCATTA 81 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGATGATCACAAAAAAACTATATCAATGTATGTGTTTATTATGCATGGTGATTGCAATA 60 Query 82 TTAGACGTAGTGAGTAGTGATGATGCTAAAGAGCAAAAGATGAAGGACAAGATTATCTCT 141 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 TTAGACGTAGTGAGTAGTGATGATGCTAAAGAGCAAAAGATGAAGGACAAGATCATCTCT 120 Query 142 TTGCCAGGCCAACCTCCTAACCTCAACTTCTCTCAATTTTCTGGCTACGTCACTGTTGAT 201 |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 121 TTGCCAGGGCAACCTCCTAACCTCAATTTCTCTCAATTCTCTGGCTACGTCACTGTTGAT 180 Query 202 CCCGCGGCCGGACGGGCTCTCTTTTATTGGCTAACCGAAGCTCCTAGGCCTAGCGGAACG 261 ||||||| |||||| ||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 181 TCCGCGGCTGGACGGAATCTTTTTTATTGGCTAACCGAAGCTCCTAGGCCCAGCGGTACG 240 Query 262 AAGCCCTTAGTCCTATGGCTCAATGGTGGTCCAGGATGCTCCTCTATTGCTTATGGTGCT 321 ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 241 AAGCCCTTAGTTCTATGGCTCAATGGTGGTCCAGGATGCTCCTCCATTGCCTACGGTGCT 300 Query 322 TCTGAAGAAGTTGGTCCATTTCGGGTTAATCCAGACGGAAAGACT-TTGCGTCTAAATCT 380 ||||| |||||||||||||||||||||||||| || ||||||||| || ||| ||||||| Sbjct 301 TCTGAGGAAGTTGGTCCATTTCGGGTTAATCCCGATGGAAAGACTCTT-CGTTTAAATCT 359 Query 381 ATATGCTTGGAACAAAGTGGCAAATGTGTTATTTTTGGATTCACCGGCGGGAGTTGGTTT 440 ||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 360 CTATGCTTGGAACAAAGTTGCAAATGTGTTATTTTTGGATTCACCGGCGGGTGTAGGTTT 419 Query 441 CTCTTACACAAACACTTCGTCAGACGAACTAACCGTGGGAGACAAGAGAACAGGGGAGGA 500 ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 420 CTCTTACACAAACACTTCGTCAGACGAACTAACAGTGGGAGACAAGAGGGCAGGGGAGGA 479 Query 501 TGCTTATAGATTCTTGGTGAGATGGTTGGAGAGGTTCCCTGAGTATAAGGAACGGGCTTT 560 ||| ||||||||||||||||||||| ||||||||||||||||||| |||||| | | || Sbjct 480 TGCATATAGATTCTTGGTGAGATGGATGGAGAGGTTCCCTGAGTACAAGGAAAGACCATT 539 Query 561 TTACATCGCCGGCGAGAGCTACGCTGGACATTATATTCCGGAGCTAGCCCAACTGATCGT 620 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 540 TTACATCGCCGGCGAGAGCTACGCTGGACATTATATTCCGGAGCTAGCTCAACTGATCGT 599 Query 621 CAACCGTAACAAAGGTGCCAAAAATCCAACTATCAATCTAAAAGGGATTCTGATGGGGAA 680 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 600 CAACCGTAACAAAGGTGCCCAAAACCCAACTATCAATCTAAAAGGGATTCTGATGGGGAA 659 Query 681 TCCTCTTGTCGATGACTACAATGACAACAAAGGAATGCGTGACTACTGGTGGAATCACGG 740 ||| || || ||||| || |||||||||||||| |||||||||||||||||||| ||||| Sbjct 660 TCCCCTAGTGGATGATTATAATGACAACAAAGGGATGCGTGACTACTGGTGGAACCACGG 719 Query 741 GCTTATATCGGACGAAAGCTACAATGACCTGACCAAATGGTGTCTCAACGACTCCATCCT 800 ||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 720 GCTTATATCCGACGAAAGCTACAAGGACCTGACCAAGTGGTGTCTCAACGACTCCATCCT 779 Query 801 ATTTCCAAAACTAAACTGCAACGCTGCTCTGAACCAAGCCTTGTCTGAGTTTGGTGACAT 860 |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 ATTTCCCAAGCCCAACTGCAACGCTGCTCTGAACCAAGCCTTGTCTGAGTTTGGTGACAT 839 Query 861 TGACCCTTACAACATCAATAGCCCTGCATGCACCACGCATGCATCATCAAATGAGTGGAT 920 ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| Sbjct 840 CGACCCTTACAACATCAATAGCCCTGCATGCATCACACATTCATCATCAAATGAGTGGAT 899 Query 921 GCAAGCATGGCGGTATAGAGGGAACGATGAGTGTGTTGTGGGATACACACGCAAGTATAT 980 |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 900 GCAAGCATGGCGGTATAGAGGGAATGATGAGTGTGTTGTGGGATATACACGCAAGTATAT 959 Query 981 GAACGATCCCAATGTGCACAAATCCTTCCATGCCCGTCTCAACGGCAGTACTCCTTGGAC 1040 |||||||| | ||||||||||||| ||||||||||| |||||| |||||||||||||||| Sbjct 960 GAACGATCTCGATGTGCACAAATCTTTCCATGCCCGCCTCAACCGCAGTACTCCTTGGAC 1019 Query 1041 ACCTTGCAGTCGTGTGATAAGAAAGAATTGGAAAGACTCACCTAAGTCCATGCTTCCTAT 1100 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1020 CCCTTGCAGTCGTGTCATAAGAAAGAATTGGAAAGACTCACCTAAGTCCATGCTTCCCGT 1079 Query 1101 CATCAAGAATCTTCTTCAAGCTCATCTCCGCATTTGGATCTTCAGTGGGGACTCGGACGC 1160 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1080 CATCAAGAATCTTCTTCAAGCTCATCTCCGTATTTGGATCTTCAGTGGGGACTCGGACGC 1139 Query 1161 GGTGTTGCCTCTAAGCGGGACGAGGCATTCGATTAATGCAATGAAATTGAAGAGTAGCAA 1220 ||||| || ||||| ||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 1140 AGTGTTACCGCTAAGTGGGACAAGGCATTCGATAAATGCAATGAAATTGAAGAGTAGCAA 1199 Query 1221 AAGGTGGTATCCATGGTACCATTCACACGGCCTAGTAGGAGGTTGGAGTCAGGTTTATGA 1280 |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 1200 AAGGTGGTATCCATGGTACCATTCACACGGCCTAGTTGGAGGTTGGAGCCAGGTTTACGA 1259 Query 1281 GGATGGCTTGCTAACGTACACGACGGTTAGAGCAGCAGGGCATGAGGTGCCATTGTCTCA 1340 ||||| |||||||| ||| |||| |||||||| |||||||||||||||||||||||||| Sbjct 1260 AGATGGTTTGCTAACTTACGCGACCGTTAGAGCCGCAGGGCATGAGGTGCCATTGTCTCA 1319 Query 1341 GCCTCGTCTCGCTCTTTTCCTCTTCACCCACTTCCTAGCCAACCACTCTCTTCCCTCCTC 1400 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1320 GCCTCGTCTCGCTCTTTTCCTCTTCACCCACTTTCTCGCCAACCACTCTCTTCCCTCCTC 1379 Query 1401 TCCCTCTTAA 1410 | |||||||| Sbjct 1380 TTCCTCTTAA 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58125713870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5