BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35780.1
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482550 jgi|Araly1|482550|fgenesh2_kg.4__1610__AT2G35780.1 2209 0.0
> Ahg482550 jgi|Araly1|482550|fgenesh2_kg.4__1610__AT2G35780.1
Length=1417
Score = 2209 bits (1196), Expect = 0.0
Identities = 1343/1412 (95%), Gaps = 18/1412 (1%)
Strand=Plus/Plus
Query 46 TCTTCTTCTTCCTTATTCTACTCCATTACGC-TTCTTGTTCCAGACACGAACAAGAAAAA 104
||||||||||||| |||||||||| || | | || ||||||||||||||||||||||||
Sbjct 20 TCTTCTTCTTCCTCATTCTACTCCCTTGCACATT-TTGTTCCAGACACGAACAAGAAAAG 78
Query 105 GACCGAATCTTTCACCTTCCCGGTGAACCAAACGATGTCTCCTTCTCTCACTTCTCTGGT 164
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 79 GACCGAATCTCACACCTTCCCGGTGAACCAAACGATGTTTCCTTCTCTCACTTCTCTGGT 138
Query 165 TACATTACCGTCAACGAGTCAGCAGGAAGAGCACTATTCTACTGGCTCACTGAGTCACCA 224
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 139 TACATTACCGTCAACGAGTCAGCTGGAAGAGCACTCTTCTACTGGCTCACTGAGTCACCA 198
Query 225 CCGAGTGAAAACCCTGAGTCTAAGCCTCTTGTCCTCTGGCTCAACGGTGGACCTGGTTGT 284
|||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 199 CCGAGTCAAAACCCTGAGTCTAAGCCTCTTGTTCTCTGGCTCAACGGTGGTCCTGGTTGT 258
Query 285 TCCTCCGTAGCTTACGGTGCCGCTGAAGAAATCGGACCTTTTAGAATCAATCCTGATGGC 344
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TCCTCCGTAGCTTACGGCGCCGCTGAAGAAATCGGACCTTTTAGAATCAATCCTGATGGC 318
Query 345 AAAACTCTTTACCACAATCCTTACTCTTGGAACAAATTGGCGAATTTGCTCTTCCTTGAA 404
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 319 AAAACTCTTTACCACAATCCTTACTCTTGGAACAAATTGGCGAATTTGCTGTTTCTTGAA 378
Query 405 TCTCCTGCTGGTGTTGGTTTCTCGTATTCGAATACTACCTCCGATTTGTATACTGCCGGA 464
||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 379 TCTCCAGCTGGTGTTGGTTTCTCGTATTCGAATACCACTTCCGATTTGTACACTGCCGGA 438
Query 465 GATCA-GAGAACTGCGGAAGATGCTTATGTGTTTCTTGTGAAATGGTTTGAGAGGTTTCC 523
|| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 439 GA-CAAGAGAACTGCTGAAGATGCGTATGTGTTTCTTGTGAAATGGTTTGAGAGGTTTCC 497
Query 524 TCAATACAAACACAGAGAGTTCTACATTGCTGGAGAAAGCTATGCAGGTCATTATGTTCC 583
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 TCAATACAAGCACAGAGAGTTCTACATTGCTGGAGAAAGCTATGCAGGTCATTATGTTCC 557
Query 584 TCAGTTGTCACAGATTGTTTATGAGAAACGCAATCCAGCTATCAACTTTAAAGGCTTCAT 643
||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 558 TCAGTTGTCGCAAATTGTTTATGAGAAACGCAATCCAGTTATCAACTTCAAAGGCTTCAT 617
Query 644 TGTTGGGAATGCTGTGATTGATGACTACCATGATTACGTGGGTTTATTTGAATATTGGTG 703
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 TGTGGGGAATGCTGTGATTGATGACTACCATGATTACGTGGGTTTATTTGAATATTGGTG 677
Query 704 GGCTCATGGGTTGATATCTGATCTCACTTACCACAACTTACGGATCACGTGTGAATTTGG 763
| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 678 GACTCATGGTTTGATATCTGATCTCACTTACCACAACTTACGGATCACTTGTGAATTTGG 737
Query 764 ATCATCCGAGCACCCGTCCTCTAAATGCACCAAGGCCATGGAAGCTGCAGACTTGGAGCA 823
||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||
Sbjct 738 ATCATCCGAGCACCCGTCCCCTGAATGCAGCAAGGCCATGGAAGCTGCAGACTTGGAGCA 797
Query 824 AGGCAATATTGATCCTTATAGCATTTACACTGTCACTTGTAAAAAGGAGGCTGCAGCTCT 883
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 798 AGGCAATATTGATCCATATAGCATTTACACTGTGACTTGTAAGAAGGAGGCTGCAGCTCT 857
Query 884 TAGGTCTCGCTTCTCGAGAGTTCGTCATCCATGGATGTGGAGAGCCTATGACCCTTGCAC 943
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 858 TAGGTCTCGCTTCTCGAGGGTTCGTCATCCATGGATGTGGAGAGCATATGACCCTTGCAC 917
Query 944 AGAGAAATACTCCGGCATGTATTTCAATTCTCCGGAGGTTCAAAAGGCTATGCATGCTAA 1003
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 AGATAGATACTCAGGCATGTATTTCAATTCTCCGGAGGTTCAAAAGGCTATGCATGCTAA 977
Query 1004 TATAACAGGACTAGCTTATCCATGGAAAGGGTGCAGTGACATCGTTGGAGAGAAATGGGC 1063
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TATAACAGGACTTGCTTATCCATGGAAAGGGTGCAGTGACATCGTTGGAGAGAAATGGGC 1037
Query 1064 AGATTCTCCTCTGTCTATGCTTCCAATCTACAAAGAACTCATCGCCGCAGGTCTCAGGAT 1123
|||||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 1038 AGATTCTCCTCTATCTATGCTTCCAATCTACAAGGAACTCATCGCTGCAGGTGTCAGGAT 1097
Query 1124 ATGGGTTTTCAGCGGAGACACTGATTCAGTGGTTCCCATTACTGGAACACGATACTCCAT 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ATGGGTTTTCAGCGGAGACACTGATTCAGTGGTTCCCATTACTGGAACACGATACTCCAT 1157
Query 1184 TAGAGCCCTCAAGTTACAACCACTCTCCAAATGGTACCCTTGGAACGATGATGGACAGGT 1243
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1158 TAGAGCCCTCAAGTTACAACCAGTCTCCAAATGGTACCCTTGGAACGACGATGGACAGGT 1217
Query 1244 TGGTGGATGGAGCCAAGTTTACAAAGGGCTGACTCTGGTGACAATACATGGAGCAGGACA 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TGGTGGATGGAGCCAAGTTTACAAAGGGCTGACTCTGGTGACAATACATGGAGCAGGACA 1277
Query 1304 TGAGGTACCTCTTTTCCGCCCTCGTCGAGCTTTTCTTCTTTTTCAGTCGTTTCTCGACAA 1363
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TGAGGTACCTCTTCACCGCCCTCGTCGAGCTTTTCTTCTTTTTCAGTCGTTTCTCGACAA 1337
Query 1364 CAAGCCATTGCCAATGTAAATTGTAAGACACTGTGATAAGACCAGAGTTT-TTTATAA-T 1421
||||||||||||||||||||||| | | || ||||||||||| ||||||| |
Sbjct 1338 CAAGCCATTGCCAATGTAAATTG-A------T---AT--GACCAGAGTTTCTTTATAAAT 1385
Query 1422 AAGAAGTAAGAATCTCTTTTTCACATTCTCAG 1453
||||||||||||||||||||||||||||||||
Sbjct 1386 AAGAAGTAAGAATCTCTTTTTCACATTCTCAG 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54354779615
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5