BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35790.1 Length=920 Score E Sequences producing significant alignments: (Bits) Value Ahg934205 jgi|Araly1|934205|scaffold_402193.1 1184 0.0 > Ahg934205 jgi|Araly1|934205|scaffold_402193.1 Length=760 Score = 1184 bits (641), Expect = 0.0 Identities = 718/755 (95%), Gaps = 6/755 (1%) Strand=Plus/Plus Query 44 AACAGAAACGGCGATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACG 103 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8 AACAGAAACGGCGATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACG 67 Query 104 TCTCTCTTCCTCCACCTTCACTTCAGGATATCATCACCGGTCAATAGCAGGATCATGG-- 161 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 68 TCTCTCTTCCTCCACCTTCACTACAGGATATCATCATCGGTCAATAGCAGGATCATGGTC 127 Query 162 -TCATCATCAGTGAACCCGAAGGTCAGATTCCAGGTTCCATCCCTTAGCCAGAGAAGCTG 220 ||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||| Sbjct 128 ATCATCATCAGTGATCCCTAAGGTCAGATTCCAGGTTCCATCCCTTAACCAGAGAAGCTG 187 Query 221 GGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACC 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 GGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACC 247 Query 281 CCAAGAGAAGAAAGAAGAGAAGGATGGAGGTGTGGTTTACTATGGACCAATCTCATCAAC 340 ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| || Sbjct 248 CCAAGAGAAGAAAGAAGAGAATGATGGAGGGGTGGTTTACTATGGCCCAATCTCATCCAC 307 Query 341 CATAAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGTCTATCAGTCTCTCTTGGCCC 400 ||| ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||| Sbjct 308 CATCAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGCCTCTCAGTGTCTCTTGGCCC 367 Query 401 GGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTC 460 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 AGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTC 427 Query 461 TACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTTGTTAGTCCCT- 519 ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 428 CACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTCGTTAC-CCCTT 486 Query 520 ACGTGCACAAGCTGAGGTGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACTT 579 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 487 ACGTGCACAAGCTTAGATGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACAT 546 Query 580 GGCTCGGCACATTTAGCGCAAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGC 639 |||| | |||||||| | | |||||||||||||||||||||||||||||||||||||||| Sbjct 547 GGCTTGCCACATTTACCCCGAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGC 606 Query 640 AAAGACCGTATGTGAGCTTCAAGGCTGATGGGAATTTCTACTTTGTGGATGCAGATCATT 699 ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| Sbjct 607 AAAGACCGTATGTGAGCTTCAAGGCGGATGGGAATTACTACTTTGTGGACGCAGATCATT 666 Query 700 GCCCTAACAAGGCATTGTTGGCTAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTT 759 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 667 GCCCCAACAAGGCATTGTTGGCCAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTT 726 Query 760 TCAAGAACTTGTAATCCAAATTCGTTTCTTTTGTT 794 ||||||||||||||||||||||||| ||||| ||| Sbjct 727 TCAAGAACTTGTAATCCAAATTCGTCTCTTT-GTT 760 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34120010715 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5