BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35790.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934205 jgi|Araly1|934205|scaffold_402193.1 1184 0.0
> Ahg934205 jgi|Araly1|934205|scaffold_402193.1
Length=760
Score = 1184 bits (641), Expect = 0.0
Identities = 718/755 (95%), Gaps = 6/755 (1%)
Strand=Plus/Plus
Query 44 AACAGAAACGGCGATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACG 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AACAGAAACGGCGATGGGAAGATCAGCTCTGATTCACTTGCTTCGCTCCCAATCCCGACG 67
Query 104 TCTCTCTTCCTCCACCTTCACTTCAGGATATCATCACCGGTCAATAGCAGGATCATGG-- 161
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 68 TCTCTCTTCCTCCACCTTCACTACAGGATATCATCATCGGTCAATAGCAGGATCATGGTC 127
Query 162 -TCATCATCAGTGAACCCGAAGGTCAGATTCCAGGTTCCATCCCTTAGCCAGAGAAGCTG 220
||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 128 ATCATCATCAGTGATCCCTAAGGTCAGATTCCAGGTTCCATCCCTTAACCAGAGAAGCTG 187
Query 221 GGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACC 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GGCATCATTTGGAGCAAAGACTAGAGAGGACGATGATGAGCACAAGATCAGCATCGGACC 247
Query 281 CCAAGAGAAGAAAGAAGAGAAGGATGGAGGTGTGGTTTACTATGGACCAATCTCATCAAC 340
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| ||
Sbjct 248 CCAAGAGAAGAAAGAAGAGAATGATGGAGGGGTGGTTTACTATGGCCCAATCTCATCCAC 307
Query 341 CATAAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGTCTATCAGTCTCTCTTGGCCC 400
||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 308 CATCAAGAAAGTGAAACTCCTCTCACTCTCCACTTGCTGCCTCTCAGTGTCTCTTGGCCC 367
Query 401 GGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTC 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 AGTCATCACTTTCATGACTTCCCCGGGACTGAATGTGATCATGAAAGGTGCTGTTGCCTC 427
Query 461 TACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTTGTTAGTCCCT- 519
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 428 CACTGTGATCTTCCTTAGCGCATCCACAACCGCTGCTCTCCACTGGTTCGTTAC-CCCTT 486
Query 520 ACGTGCACAAGCTGAGGTGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACTT 579
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 487 ACGTGCACAAGCTTAGATGGCAGCCTGGTTCAGACACTTTTGAGGTCGAGATGATGACAT 546
Query 580 GGCTCGGCACATTTAGCGCAAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGC 639
|||| | |||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GGCTTGCCACATTTACCCCGAAGACACTGAAATTCTCAGACATACGTTATCCAGACACGC 606
Query 640 AAAGACCGTATGTGAGCTTCAAGGCTGATGGGAATTTCTACTTTGTGGATGCAGATCATT 699
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 607 AAAGACCGTATGTGAGCTTCAAGGCGGATGGGAATTACTACTTTGTGGACGCAGATCATT 666
Query 700 GCCCTAACAAGGCATTGTTGGCTAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTT 759
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCCCAACAAGGCATTGTTGGCCAGGCTCACTCCTCCAAAGGATGCTCATGACTCTGCTT 726
Query 760 TCAAGAACTTGTAATCCAAATTCGTTTCTTTTGTT 794
||||||||||||||||||||||||| ||||| |||
Sbjct 727 TCAAGAACTTGTAATCCAAATTCGTCTCTTT-GTT 760
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5