BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35795.1
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482551 jgi|Araly1|482551|fgenesh2_kg.4__1611__AT2G35795.1 675 0.0
> Ahg482551 jgi|Araly1|482551|fgenesh2_kg.4__1611__AT2G35795.1
Length=573
Score = 675 bits (365), Expect = 0.0
Identities = 542/618 (88%), Gaps = 50/618 (8%)
Strand=Plus/Plus
Query 114 CTGTGGATGAAACGAAGAATCCT-AGATTTCTGAATGGCGACACCATTTATAGCGGGGGT 172
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1 CTGTGGATGAAACGAAGAAT-CTCAGATTTCTAAATGGCGACACCATTTATAGCGGGGGT 59
Query 173 TGCAGTAGCTGCAACAGCACTTGCTGGTAGATATGGAATCCAAGCATGGCAAGCATTCAA 232
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TGCAGTAGCTGCAACTGCACTTGCTGGTAGATATGGAATCCAAGCATGGCAAGCATTCAA 119
Query 233 GGCAAGGCCACCAAGGCCCAAAATTAAGAAATTTTATGAGGGCGGTTTCCAGCCTACGAT 292
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 120 GGCAAGGCCACCAAGGCCCAAAATTAAGAAATTCTATGACGGCGGTTTCCAGCCTACAAT 179
Query 293 GACGAAAAGGGAAGCTGCTCTCATTCTTGGCGTCAGGGAGAGTGTAGCGGCGGAAAAGGT 352
||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| |||||
Sbjct 180 GACGAAAAGGGAAGCTGCTCTTATTCTTGGCATCAGGGAGAATGTAGCGGCGGAGAAGGT 239
Query 353 GAAGGAAGCACACAGGAAGGTAATGGTAGCAAACCATCCAGATGCAGGTGGTAGCCATTT 412
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 240 GAAGGAAGCACACAGGAAGGTAATGGTTGCAAACCATCCAGATGCAGGCGGTAGCCATTT 299
Query 413 CCTAGCCTCTAAGATCAATGAAGCTAAAGACGTGATGCTAGGCAAAACTAAAAACAGCGG 472
||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 300 CCTGGCTTCTAAGATCAATGAAGCTAAAGACGTGTTGCTCGGCAAAACTAAAAACAGCGG 359
Query 473 ATCCGCTTTTTGATGCAAATTTCAATCAAA-A-GACTTCCTTATGAATCATCTTATGTTA 530
||||||||||||||||| |||||||||||| | |||| || |||||||||||||||||||
Sbjct 360 ATCCGCTTTTTGATGCATATTTCAATCAAAGAAGACT-CCATATGAATCATCTTATGTTA 418
Query 531 TAGGACTGTAATGTCAAAATGCAGATTTTATGCTAATTTATAAGCTTGTGGTCTGTTTGT 590
||| | | || | | | | || || | | | |||||||||||||||||
Sbjct 419 TAG---T--A-TG-C----T--A-A----AT--TA-T--A-A-GCTTGTGGTCTGTTTGT 453
Query 591 GACACA-TAAA-GACTCGAATCTTTTCTTTCACTTGTTGTCGCTGAAAAGAACACAAAAA 648
|| ||| |||| ||||||||||||||||||||||||| |||| ||||||||| | ||
Sbjct 454 GAGACACTAAAAGACTCGAATCTTTTCTTTCACTTGTGGTCGTTGAAAAGAA-A-AA--- 508
Query 649 TAAAAACGCAAAGCAGAAGGGCGTTCTAGTCTTTTCGGTTTTaaaaaaaTCCAGTAATAG 708
| | ||||||||||| ||||||||| | || |||||| |||||||||||
Sbjct 509 -------G----G-AGAAGGGCGTTTTAGTCTTTTTAGCTTCAAAAAA-TCCAGTAATAG 555
Query 709 AAACTCTAGTACACGTGT 726
||||| ||||||||||||
Sbjct 556 AAACTGTAGTACACGTGT 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26724164817
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5