BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35800.1
Length=3115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482552 jgi|Araly1|482552|fgenesh2_kg.4__1612__AT2G35800.1 4481 0.0
> Ahg482552 jgi|Araly1|482552|fgenesh2_kg.4__1612__AT2G35800.1
Length=2954
Score = 4481 bits (2426), Expect = 0.0
Identities = 2836/3020 (94%), Gaps = 84/3020 (3%)
Strand=Plus/Plus
Query 6 AGGGTCATCATCATTTCATGGTTACctcctcttcctctcttcttactctcaccatatctg 65
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGGGTCATCATCATTTCATGGTTACCTCCTCCTCCTCTCTTCTTACTCTCACCATATCTG 60
Query 66 ctctctctctctctctGTTTCAAGCTTTTGCTCCCA-------TT--TTTCATTTCCTTC 116
|||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 61 ------CTCTCTCTCTGTTTCAAGCTTTTGCTCCCATTGCTTCTTCATTTCATTTCCTTC 114
Query 117 GTATTCTCGCTCGAGCTTAGCGGTTGATGTACCAATGACCAAATCGATATTTGAATCGCC 176
||||||||||||||||||| |||||||| | |||||| |||||||| ||| |||||||||
Sbjct 115 GTATTCTCGCTCGAGCTTAACGGTTGATATCCCAATGGCCAAATCGGTATCTGAATCGCC 174
Query 177 GTGGCTACCTTTCTTTTTCTTCTGATTTCTCTATCTCTCGCTTGATTCTACCACTTTTAG 236
|| | | ||| ||| | || | | ||| | | ||||| | |||||||
Sbjct 175 GT--C--GC-TTC-----CTT-T--CTT-T-T-TCT-T--C-TGATT-T----CTTTTAG 209
Query 237 GGTTTCTATTATTCCCAGGGACTTTGGGTTTCTTTAAGAAGTTCGATTCGTCTCCGTTTT 296
||||||| || |||||| ||||||||||||||||||||||||| |||| | | ||||||
Sbjct 210 GGTTTCTTTTTTTCCCACGGACTTTGGGTTTCTTTAAGAAGTTGGATTAG--TGCGTTTT 267
Query 297 CTTTTTAGGGTTAACGAAGTCTGTGGTGTTGGATTTCGATCtttttttttttGGTATCTT 356
||||||||| | || || |||||||| ||||||| ||| |||||||||||
Sbjct 268 GTTTTTAGGG-T-------TC-GT-GTGTTGGA-TTCGATC----TTTCTTTGGTATCTT 312
Query 357 CCCCATTGACTGTTGCGGTGATAAGAGAG-TGAC-GCAATGGTGTCTAAGAATGATCATA 414
||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 313 --CCATTGAATGTTGCGGTGATAAGAGTGACGACTACAATGGTGTCTAAGAATGATCATA 370
Query 415 TCGAGACTTTATTCAATTCAATCCAACTAGTTAAAGATGTTGTTCTTCTTCCGATTGAGC 474
|||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 371 TCGAGACTTTCTTCAATTCAATCCAAGTAGTTAAAGA---TGTTCTTCTTCCGATTGAGC 427
Query 475 TTGGTGTGAAAAAGGCGGCAAGAGATATTGAAAATTGTTGGATAAGCAAAGAAAGGGATC 534
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 428 TCGGTGTGAAAAAGGCGGCAAGAGACATTGAAAATTGTTGGATAAGCAAAGAAAGGGATC 487
Query 535 TAGGTCTTGTTTTCAGATCATCTGGAAGAAACAGGAAGAAGCGGA-TTGTTGCTACTCCT 593
||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||| ||||
Sbjct 488 TAGGTCTTGTTTTGAGATCATCTGGAAGAAATAGGAAGAAGCGGATTTG-TGCTAGTCCT 546
Query 594 GAATTTGACGACAATGCTACTAATAATGTTCAGTGTGTGGTGGTTACTGATGAGAGAAAG 653
|||||||||||||||||||||||||||||||| |||| ||||| | |||||||||||||
Sbjct 547 GAATTTGACGACAATGCTACTAATAATGTTCA--GTGT-GTGGTAAGTGATGAGAGAAAG 603
Query 654 AAAGGTTTGTCTATCAAGAAGATCCCTGTGAAGTCACTCTTTGGTATGTTTTCTCCCAAT 713
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 AAAGGTTTGTCTATC---AAGATCCCTGTGAAGTCACTCTTTGGTATGTTTTCTCCGAAT 660
Query 714 TTAGTC-AGTGAGAAGTTGAGTCGTGGAAATGATGTGGTGGTGGCGAAGAAAGATAAGTC 772
|||| | ||||| |||||||||||| ||||||| |||||||||| |||||||||||||||
Sbjct 661 TTAG-CGAGTGACAAGTTGAGTCGTAGAAATGAGGTGGTGGTGGTGAAGAAAGATAAGTC 719
Query 773 TTTGGAGAAGAAAGATGATGATTCTTGTACTGATTGCTTCAAGTTTGCGATGACTTGGTC 832
||| | | ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 720 TTT-G-G-AGAAAGACGATGATTCTTGTACCAATTGCTTCAAGTTTGCGATGACTTGGTC 776
Query 833 TTTGTTGGTTAGTGGCTTTGTTCATGCTTTTCCTATTCCTTTTAAAATTGGTAAGAAGAG 892
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 777 TTTGTTGGTTAGTGGCTTTGTTCATGCTTTTCCTATTCCTTTTAAGATAGGTAAAAAGAG 836
Query 893 GATTCATAAGATGGGGGATGATGAGAACAGTCTACGTAAACACGGCCTTAAATCAAAGGC 952
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GATTCACAAAATGGGGGATGATGAGAACAGTCTACGTAAACACGGCCTTAAATCAAAGGC 896
Query 953 GGCATTTGTGAGTCGGAAAGAAGTGAGGTGTCAGTCAGTTGAATCTGTAGAAAAGGAAGG 1012
||||||||| | |||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 897 GGCATTTGTAAATCGGAAAGAAGTGAGGCGTCAGTCAGTTGAATCTGCAGAAAAGGAAGG 956
Query 1013 GAACCCTTTTTCGATTGAATGCGCTGTTGGTTTTGTTGTTGAAATGTTGGCTCAGAATCT 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAACCCTTTTTCGATTGAATGCGCTGTTGGTTTTGTTGTTGAAATGTTGGCTCAGAATCT 1016
Query 1073 CCAGAAGCTGGACCAGTTTATACAGGATAGTTCAGAGAATGAATCTTGTTGTTCCAAGGA 1132
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CCAGAAGCTGGACCAATTCATACAGGATAGTTCAGAGAATGAATCTTGTTGTTCCAAGGA 1076
Query 1133 AGCTAGTTCTAATGATAGTCCACTTATCTTTAACATCTGGGAGGCTAGAAAACTCGACGT 1192
||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1077 AGCTAGTCCTAATGATGGTCCACTTATCTTTAACATCTGGGAGGCTAGAAAACTTGACGT 1136
Query 1193 AAATGGATTCCTCGGGAACCTGATGTTTGCCAGAGTTGGAGATGTGGCGTCAGGTATAGG 1252
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 AAATGGATTCCTTGGGAACCTGATGTTTGCCAGAGTTGGAGATGTGGCGTCAGGTATAGG 1196
Query 1253 TGGCCTGACATCTCACATAAGTGAAGATGGTGATGAAAGTAATGTCAGTACTGCTGGTAA 1312
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1197 TGGCCTGACATCTCACGTAAGTGAAGATGGTGATGAAAGTAATGTCAGTACTACTGGTAA 1256
Query 1313 GGAGGAAAGTGCAGTTGATTCTCCGCAGAACTTGGCAACTGGACTATTGAGTATACCTTT 1372
|||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||
Sbjct 1257 GGAGGAAAGTGCAGTTGATTCTCCACAGAACCTGGCAACTGGACTACTGAGTATACCTTT 1316
Query 1373 ATCAAATGTAGAGCGCTTAAAATCCACACTGTCCACAATTTCACTGACGGAACTTATTGA 1432
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1317 ATCAAATGTAGAGCGCTTAAAATCCACACTGTCCACGATTTCACTGACGGAACTTATTGA 1376
Query 1433 ACTTTTACCACAATTAGGACGACCTTCAAGAGACCATCCAGACAAGAAAAAACTAATTTC 1492
|||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 1377 GCTTTTACCACAATTAGGACGGCCATCAAGAGACCATCCAGACAAGAAAAAACTGATTTC 1436
Query 1493 TGTTCAGGATTTTTTCAGATACACCGAGTCTGAAGGCAGGAGGTTCTTTGAAGAATTAGA 1552
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1437 TGTTCAGGATTTTTTCAGATACACAGAGTCTGAAGGCAGGAGGTTCTTTGAAGAGTTAGA 1496
Query 1553 TAGAGATGGTGATGGCAAAGTAACTTTGGAGGATCTGGAAATTGCAATGAGGAGAAGAAA 1612
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1497 TAGAGATGGTGATGGCAAAGTAACTTTGGAAGATCTGGAAATTGCAATGAGGAGAAGAAA 1556
Query 1613 ATTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGGAGTCATCTTTTCTCGAA 1672
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1557 GTTGCCCAGAAGATACGCCAAGGAATTTATGCGACGAGCTAGAAGTCATCTTTTCTCGAA 1616
Query 1673 ATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAACCATCCTCCG 1732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 ATCGTTTGGTTGGAAGCAATTTTTGTCCTTGATGGAACAGAAGGAGCCAACCATCCTCCG 1676
Query 1733 TGCCTATACTTCTCTCTGCTTGACCAAGTCTGGTACTCTTAAGAAAAGTGAGATATTGGC 1792
|||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1677 TGCCTATACTTCTCTCTGTTTGACCAAGTCTGGTACTCTTCAGAAGAGTGAGATATTGGC 1736
Query 1793 ATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGATT 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 ATCACTAAATAACGCAGGACTTCCTGCTAATGAAGAAAATGCTATAGCCATGATGAGATT 1796
Query 1853 TTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTTTT 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1797 TTTGAAGGCTGATACCGAGGAGTCTATCTCATACGGACATTTCCGTAATTTCATGGTGTT 1856
Query 1913 GCTGCCATATGAGCGCTTACAAGATGATCCTCGTAACATCTGGTTTGAAGCTGCGACTGT 1972
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 GCTGCCATATGAGCGGTTACAAGATGATCCTCGTAACATCTGGTTTGAAGCTGCGACTGT 1916
Query 1973 TGTTGCTGTTGCACCCCCTGTGGCCTTACCTGCTGGAGATGTTCTAAAATCTGCATTAGC 2032
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TGTTGCTGTTGCACCTCCTGTGGCCTTACCTGCTGGAGATGTTCTAAAATCTGCATTAGC 1976
Query 2033 GGGAGGGCTTGCCTCTGCTCTCTCCACTTCCTTAATGCATCCGATTGACACAATCAAGAC 2092
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1977 AGGAGGGCTTGCCTCTGCTCTCTCCACCTCCTTAATGCATCCGATTGACACAATCAAGAC 2036
Query 2093 ACGTGTGCAAGCATCAACCTTGTCATTTCCTGAAGTAATAGCCAAGCTTCCAGAGATTGG 2152
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2037 ACGTGTGCAAGCATCAACCTTGTCATTTCCTGAAGTAATAGCGAAGCTTCCAGAGATTGG 2096
Query 2153 TGTCCGGGGAGTGTATAGGGGTTCTATTCCAGCAATTCTTGGACAATTTTCAAGCCATGG 2212
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TGTGCGGGGAGTGTATAGGGGTTCTATTCCAGCAATTCTTGGACAATTTTCAAGCCATGG 2156
Query 2213 CCTGCGGACAGGAATATTCGAAGCAAGCAAACTTGTGTTGATCAATTTTGCTCCCAATCT 2272
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2157 CCTGCGAACAGGAATATTCGAAGCAAGCAAACTTGTGTTGATCAATTTTGCTCCCAATCT 2216
Query 2273 CCCAGAAATTCAGGTTCAATCGATTGCATCATTCTGCAGCACACTATTAGGCACAGCTGT 2332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 CCCAGAAATTCAGGTTCAATCGATTGCATCATTCTGCAGCACACTATTAGGCACAGCTGT 2276
Query 2333 GCGGATTCCATGTGAGGTGCTGAAGCAACGGTTGCAGGCTGGCATGTTTAACAATGTAGG 2392
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2277 GCGGATTCCATGTGAGGTGCTGAAGCAACGGTTGCAGGCCGGCATGTTTAATAATGTAGG 2336
Query 2393 GGAAGCCATTGTCGGGACGTGGAAGCAAGATGGTCCAAGTGGCTTTTTCCGTGGGACAGG 2452
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2337 GGAAGCCATTGTAGGGACGTGGAAGCAAGATGGTCCAAGTGGCTTTTTCCGTGGGACAGG 2396
Query 2453 CGCAACTCTTTGCCGCGAAGTTCCACTATACGTTGTTGGCATGGGACTGTATGCAGAGTC 2512
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 CGCAACTCTTTGCCGTGAAGTTCCACTATACGTTGTTGGCATGGGACTGTATGCAGAGTC 2456
Query 2513 CAAAAAGATGGTGGCGCAAGCTCTGGGAAGAGAACTGGAGGCATGGGAGACAATAGCGGT 2572
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 2457 CAAAAAGATGGTGGCGCAAGCGCTGGGAAGAGAACTCGAGGCATGGGAGACAATAGCAGT 2516
Query 2573 TGGGGCGGTGTCAGGAGGTATTGCAGCAGTTGTAACAACCCCATTTGATGTGATGAAGAC 2632
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TGGGGCGGTGTCAGGAGGTATAGCAGCAGTTGTAACAACCCCATTTGATGTGATGAAGAC 2576
Query 2633 GAGAATGATGACTGCAACGCCAGGGAGACCGATCTCAATGTCTATGGTTGTTGTATCGAT 2692
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2577 GAGAATGATGACTGCAACACCAGGGAGACCGATCTCAATGTCGATGGTTGTTGTCTCGAT 2636
Query 2693 TCTGCGTAATGAGGGACCGCTAGGTTTGTTCAAAGGAGCAGTCCCGAGGTTCTTCTGGGT 2752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 TCTGCGTAATGAGGGACCGCTAGGTTTGTTCAAAGGAGCAGTCCCGAGGTTCTTCTGGGT 2696
Query 2753 GGCTCCTCTAGGTGCTATGAACTTTGCTGGGTACGAACTAGCCAAGAAAGCTATGCAGAA 2812
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2697 GGCTCCTCTAGGTGCTATGAACTTTGCTGGCTACGAACTAGCCAAGAAAGCTATGCAGAA 2756
Query 2813 GAACGAAGATGCAGTGCTAGCGGATCAGCTTGGTCAGAAGAAGCTTTGCTAATGGGATTT 2872
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2757 GAACGAGGATGCTGTGCTAGCAGATCAGCTTGGTCAGAAGAAGCTTTGCTAATGCGATTT 2816
Query 2873 TACTTTGCTTTGCT--GCT---ACGAAGTTTTTTGGGGGCAGCTTAAGCCGGAGACTCAC 2927
||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
Sbjct 2817 CACTTTGCTTTGCTTTGCTGCTACGAAGTTTTTTGGGGGCAGCTTAAGCCGGAGACTCTC 2876
Query 2928 CTCTTTTGTTAAAAGCTACTTTGCAAAATTTTGACaaaaaaaaaaGGGTTCATTGTTTTG 2987
|||| |||||||| ||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 2877 CTCTGTTGTTAAATGCTACTTTGCAAATTTTTGACAAAAAAAAAAG--TTCATTGTTTTG 2934
Query 2988 TTGTGCATTGAGGACAGTTT 3007
||||||||||||||||||||
Sbjct 2935 TTGTGCATTGAGGACAGTTT 2954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117660766805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5