BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35820.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934208 jgi|Araly1|934208|scaffold_402196.1 556 7e-158
Ahg934209 jgi|Araly1|934209|scaffold_402197.1 499 1e-140
> Ahg934208 jgi|Araly1|934208|scaffold_402196.1
Length=615
Score = 556 bits (301), Expect = 7e-158
Identities = 483/568 (85%), Gaps = 23/568 (4%)
Strand=Plus/Plus
Query 17 CAACGATGGCGAAATCCCCGGTAGAGGTGAAACTGATCCCGATCGAAGCTAC-TCCTGAG 75
|||||||||||||||| || || || ||||| |||||||||||||||||||| ||| |||
Sbjct 18 CAACGATGGCGAAATCTCCAGTGGAAGTGAATCTGATCCCGATCGAAGCTACTTCC-GAG 76
Query 76 AATTTCGCAGACTATGGTCAAGTCATCGAAGCCTCTCGTGACGGTGCAGGTTTCGGTCCC 135
| ||||| |||||||||||| ||||||||||||||||||| |||| | ||||||||||
Sbjct 77 ACCTTCGCGGACTATGGTCAAATCATCGAAGCCTCTCGTGATGGTGAAACTTTCGGTCCC 136
Query 136 AACGACGCTCAACTGGATCTCTCCAGAGGAATCCCACGGTTCTATATAATG-CGGATCAG 194
|||||||||||| |||||||||||||||||| ||||||||| ||||||||| ||| |||
Sbjct 137 AACGACGCTCAATTGGATCTCTCCAGAGGAACCCCACGGTTATATATAATGCCGGTTCA- 195
Query 195 AGATACACCCTTTGA-CTTTTCCGTA-CTCACTCACCACGCGAGCGTGACACAGTGTCTA 252
||||||| ||||| | ||||||| | ||||||| ||||| | |||||||||||| |||
Sbjct 196 AGATACATCCTTT-AGCTTTTCC-AAGATCACTCATCACGCAAACGTGACACAGTGCCTA 253
Query 253 GGATCAATAGGAGGTCATGTTTGGTACCTTGGAGTGGCTAAACCGACACTTATTGAAGAT 312
||||||||||||| |||||||||||| ||||||||||||| ||| | ||| |||||||
Sbjct 254 GGATCAATAGGAGCTCATGTTTGGTATGTTGGAGTGGCTAAGCCGTCTCTTGTTGAAGA- 312
Query 313 GGTGATGATGGAAA-GATG-GTAGATA-AATTGAAATCAAGGTCTGGTCACTTGTACGCT 369
|||||| |||| || | ||||||| | | | |||||| |||||||||||||||||||
Sbjct 313 --TGATGA-CGAAAGGA-GAGTAGATACAGTAG-AATCAAAGTCTGGTCACTTGTACGCT 367
Query 370 CCTCCTGCGGTTGAAGAGATTCGCGTCTTCAGGGTCTCGGGACCAAAGTTTATTAAACTG 429
|||||||||||||||||| | ||||||||||||||||| ||| |||||||| ||||| |
Sbjct 368 CCTCCTGCGGTTGAAGAGGTGCGCGTCTTCAGGGTCTCAGGAACAAAGTTTGTTAAA-TA 426
Query 430 -AACCACGGTACGTGGCATGTTGGACCACTCTTCAGTGACAGCTACATGGACTTCTACAA 488
|||| |||||| |||||||||||||| ||||||| || |||| |||||||||||||||
Sbjct 427 CAACCGCGGTACATGGCATGTTGGACCGCTCTTCAAAGAAAGCTCCATGGACTTCTACAA 486
Query 489 CCTTGAGCTCA-GCAACACAAATGCGGTGGATC-GCACGACATATGATTTCATCAAAAAT 546
|||||||||| | | |||| ||| ||||||| | |||||||||||||||| || |||
Sbjct 487 TCTTGAGCTCACGGA-CACAGATGTGGTGGATGAG-ACGACATATGATTTCAGGAAGAAT 544
Query 547 AAAGGAGTCACCATCCGAGTTGACCCCA 574
|| ||||||| | ||||| || | ||||
Sbjct 545 AATGGAGTCATCTTCCGATTTAAACCCA 572
> Ahg934209 jgi|Araly1|934209|scaffold_402197.1
Length=601
Score = 499 bits (270), Expect = 1e-140
Identities = 489/591 (83%), Gaps = 29/591 (5%)
Strand=Plus/Plus
Query 22 ATGGCGAAATCCCCGGTAGAGGTGAAACTGATCCCGATCGAAGCTACTCCTGAGAATTTC 81
||||||||||| ||||| || |||||||||||| | |||||||||||||| |||| ||||
Sbjct 21 ATGGCGAAATCTCCGGTGGAAGTGAAACTGATCTCTATCGAAGCTACTCCGGAGACTTTC 80
Query 82 GCAGACTATGGTCAAGTCATCGAAGCCTCTCGTGACGGTGCAGGTTTCGGTCCCAACGAC 141
|| |||||||||||| ||||||||||||| ||||| ||||| ||| |||||| |||||
Sbjct 81 GCGGACTATGGTCAAATCATCGAAGCCTCCCGTGATGGTGCCTCTTTTGGTCCCGACGAC 140
Query 142 GCTCAACTGGATCTCTCCAGAGGAATCCCACGGTTCTATATAATGCGGATCAG-A-GATA 199
|||||| | |||||||||||||||| |||||||||||||||| | ||| | | | || |
Sbjct 141 GCTCAATTAGATCTCTCCAGAGGAACCCCACGGTTCTATATACTCCGGCT-GGAAGGA-A 198
Query 200 CACCCTTTGACTTTTCCGTAC-TCAC-TCACCACGCGAGCGTGACACAGTGTCTAGGATC 257
| |||| | |||||| || |||| | | ||||| | ||||||||||||||||||||
Sbjct 199 GATCCTTAGGGTTTTCC-AACATCACAT-ATCACGCAAATGTGACACAGTGTCTAGGATC 256
Query 258 AATAGGAGGTCATGTTTGGTACCTTGGAGTGGCTAAACCGACACTTATTGAAGATGGTGA 317
||||||||||||||||||||| |||||||| ||||| ||| | ||||||||||||| |||
Sbjct 257 AATAGGAGGTCATGTTTGGTATCTTGGAGTAGCTAAGCCGTCTCTTATTGAAGATGATGA 316
Query 318 TG--A-TGGAAAGATG-GTAGATAAATT-GAAATCAAGGTCTGGTCACTTGTACGCTCCT 372
|| | ||||| || | |||||| | | ||| |||| |||||| ||||||||| ||||
Sbjct 317 TGGTAATGGAAGGA-GAGTAGATGCAGTAGAA-TCAAAGTCTGGCCACTTGTACATTCCT 374
Query 373 CCTGCGGTTGAAGAGATTCGCGTCTTCAGGGTCTCGGGACCAAAGTTTATTAAACTGAAC 432
||||| || ||||||||||||||||||||| |||||||||| |||||| ||||||| |||
Sbjct 375 CCTGCAGTGGAAGAGATTCGCGTCTTCAGGATCTCGGGACCCAAGTTTGTTAAACTCAAC 434
Query 433 CACGGTACGTGGCATGTTGGACCACTC-TTCAGTGACAGCTAC---ATGGACTTCTACAA 488
| |||||| ||||||| |||||| || || || ||||||| | ||||| ||||||||
Sbjct 435 CGCGGTACATGGCATGCTGGACC-CTTGTTTAGAGACAGCTCCTCCATGGATTTCTACAA 493
Query 489 CCTT-GAGCTCAGCAACACAAATGCGGTGGATCGCACGACATATGATTTCATCAAAAATA 547
| || ||||||| ||||||||||| |||||||| |||||| ||||||||| || ||||
Sbjct 494 C-TTAGAGCTCACCAACACAAATGAGGTGGATCACACGACGCATGATTTCAAGAAGAATA 552
Query 548 AAGGAGTCACC-ATCCGAGTTGACCCC-AACGA-T--GTTGACACATCGTC 593
| ||||||| | | |||| |||||||| || || | | ||||||||||||
Sbjct 553 ATGGAGTCATCTA-CCGATTTGACCCCTAA-GAATAAGATGACACATCGTC 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5