BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35830.2
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934209 jgi|Araly1|934209|scaffold_402197.1 682 0.0
> Ahg934209 jgi|Araly1|934209|scaffold_402197.1
Length=601
Score = 682 bits (369), Expect = 0.0
Identities = 503/567 (89%), Gaps = 11/567 (2%)
Strand=Plus/Plus
Query 97 TTCAACGATGGCGAAATCTCCGGTGGAAGTGAATTTGATTC-CTATCGAAGCTACTCCGG 155
||| || |||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 15 TTC-ACAATGGCGAAATCTCCGGTGGAAGTGAAACTGA-TCTCTATCGAAGCTACTCCGG 72
Query 156 AGAAC-TTCGCAGAGTATGGTCAAGTCATTGAAGCCTCTCGTGATGGTG-CTGGTTTCGG 213
|| || ||||| || ||||||||| |||| |||||||| |||||||||| || ||| ||
Sbjct 73 AG-ACTTTCGCGGACTATGGTCAAATCATCGAAGCCTCCCGTGATGGTGCCT-CTTTTGG 130
Query 214 TCCCCACGACGCTCAACTAGATCTCTCTAGAGGAACCCCACGGCTCTATATACTTAGGCT 273
|||| ||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 131 TCCCGACGACGCTCAATTAGATCTCTCCAGAGGAACCCCACGGTTCTATATACTCCGGCT 190
Query 274 GAAAGAAACACCCTTAGGGTTTTTCAAGATCACACATCACGCAAAGGTGACACAGTGTCT 333
| ||| || | |||||||||||| ||| |||||| |||||||||| ||||||||||||||
Sbjct 191 GGAAGGAAGATCCTTAGGGTTTTCCAACATCACATATCACGCAAATGTGACACAGTGTCT 250
Query 334 AGGATCAATAGGAGGTGATGTTTGGTATATGGGAGTGGCTAAGCCGTCTCTTATTGAAGA 393
|||||||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||
Sbjct 251 AGGATCAATAGGAGGTCATGTTTGGTATCTTGGAGTAGCTAAGCCGTCTCTTATTGAAGA 310
Query 394 TGATGACGATGATGGAAGGAGCGTAGATACAGTAAAATCAAAGTCTGGTCACTTATACAT 453
|||||| | | |||||||||| |||||| ||||| ||||||||||||| ||||| |||||
Sbjct 311 TGATGATGGTAATGGAAGGAGAGTAGATGCAGTAGAATCAAAGTCTGGCCACTTGTACAT 370
Query 454 TCCACCTG-AGGTGGAAGAGATTCGCGTCTTCAGGTTCTCGGGACCAAAGTTTGTGAAAC 512
||| |||| || ||||||||||||||||||||||| |||||||||| |||||||| ||||
Sbjct 371 TCCTCCTGCAG-TGGAAGAGATTCGCGTCTTCAGGATCTCGGGACCCAAGTTTGTTAAAC 429
Query 513 TGCA-CCGTGGTACATGGCATGCTGGACCCTTGTTTAGTGGCAGCTCCTTCATGGATTTC 571
| || ||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||
Sbjct 430 T-CAACCGCGGTACATGGCATGCTGGACCCTTGTTTAGAGACAGCTCCTCCATGGATTTC 488
Query 572 TACAACTTAGAGCTCAGCAACACAAATGTGGTGGATCACACGTCACATGATTTCACCAAG 631
|||||||||||||||| ||||||||||| ||||||||||||| | |||||||||| |||
Sbjct 489 TACAACTTAGAGCTCACCAACACAAATGAGGTGGATCACACGACGCATGATTTCAAGAAG 548
Query 632 AATAATGGAGTCAGCTTCGGATTTGAC 658
||||||||||||| || | ||||||||
Sbjct 549 AATAATGGAGTCATCTACCGATTTGAC 575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5