BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35840.1
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934210 jgi|Araly1|934210|scaffold_402198.1 2025 0.0
Ahg914277 jgi|Araly1|914277|Al_scaffold_0001_4531 1230 0.0
> Ahg934210 jgi|Araly1|934210|scaffold_402198.1
Length=1310
Score = 2025 bits (1096), Expect = 0.0
Identities = 1223/1284 (95%), Gaps = 10/1284 (1%)
Strand=Plus/Plus
Query 37 TAGCAATCATGGAGC-GTCTAACATCTCCTCCTCGTTTGATGATTGTCTCTGATCTTGAT 95
||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||
Sbjct 13 TAGCAATCATGGAGCGGT-TAACATCTCCTCCTCGTCTGATGATTGTCTCGGATCTTGAT 71
Query 96 CATACTATGGTTGATCATCATGATCCTGAGAATCTATCTCTGCTGAGATTCAATTCGTTG 155
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 72 CATACTATGGTTGATCATCATGATCCTGAGAATCTCTCTCTGTTGAGATTCAATTCGTTG 131
Query 156 TGGGAACACGCTTATCGCCATGACTCTCTTCTTGTGTTTTCTACGGGAAGATCACCGACA 215
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 132 TGGGAACACGCTTATCGCCATGACTCTCTTCTTGTGTTCTCTACGGGAAGATCACCAACA 191
Query 216 TTGTATAAAGAACTCAGAAAGGAGAAACCTTTG-TTGACCCCTGATATTACCATTATGTC 274
|||||||||||| | |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 192 TTGTATAAAGAATTGAGAAAGGAGAAACCTTTGCTT-ACCCCTGATATTACCATTATGTC 250
Query 275 TGTAGGAACTGAGATTACTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTGAGGC 334
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 251 TGTAGGAACTGAGATTATTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTGAGAC 310
Query 335 TCTGAACAATAAATGGGATTTGGGTATTGTCAAACAAGAAGCTAGCAACTTCCCTGAGTT 394
| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 311 TTTGAACAATAAATGGGATTTGGGTATTGTCAAAGAAGAAGCTAGCAAGTTCCCTGAATT 370
Query 395 AAAGCTTCAGGCAGAAACTGAGCAGAGGCCACACAAGGTTAGCTTTTATGTTGAAAAGAG 454
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 371 AAAGCTTCAGGCAGAAACTGAGCAGAGGCCACATAAGGTTAGCTTTTATGTTGACAAGAG 430
Query 455 TAAGGCTCAGGAAGTTACTAAGGAGCTATCACAGAGGTTCCTGAAACGTGGGCTGGATGT 514
|||||| |||||||| |||||||||||||||||| |||||||||||| |||| |||||||
Sbjct 431 TAAGGCCCAGGAAGTGACTAAGGAGCTATCACAGCGGTTCCTGAAACATGGGTTGGATGT 490
Query 515 CAAAATAATTTACAGTGGAGGTATGGATTTGGATATTTTACCACAAGGTGCCGGAAAGGG 574
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 491 CAAGATAATTTACAGTGGAGGCATGGATTTGGATATTTTACCACAAGGTGCTGGAAAGGG 550
Query 575 ACAAGCGCTTGCATATCTGCTGAAGAAACTGAAGACTGAGGGGAAACTCCCTGTCAATAC 634
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 551 ACAAGCGCTTGCATATCTGCTGAAGAAGCTAAAGACTGAAGGGAAACTCCCTGTCAATAC 610
Query 635 TCTTGCTTGTGGCGACTCTGGGAATGATGCTGAGCTGTTTAGTATTCCCGATGTTTATGG 694
|||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||
Sbjct 611 TCTTGCTTGTGGCGACTCTGGGAACGATGCTGAACTGTTTAGCATTCCGGATGTTTATGG 670
Query 695 TGTTATGGTAAGCAATGCTCAAGAAGAGCTGTTGAAGTGGCATGCTGAAAATGCAAAAGA 754
||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 671 TGTCATGGTAAGCAATGCTCAGGAAGAGCTGTTGAAGTGGCATGCTGAGAATGCAAAAGA 730
Query 755 CAACCCTAAGGTAATCCATGCAAAGGAGAGGTGTGCAGGTGGGATTATACAAGCCATTGG 814
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 731 CAACCCGAAGGTAATCCATGCAAAGGAGAGGTGCGCGGGTGGGATTATACAAGCCATTGG 790
Query 815 TCACTTCAAGCTTGGTCCGAACCTTTCTCCAAGAGATGTCTCTGA-TTTCTTAGAGAT-C 872
|||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| | |
Sbjct 791 TCACTTCAAGCTTGGTCCAAACCTTTCTCCAAGAGATGTCTCTGACTTT-TTAGAG-TGC 848
Query 873 AAGGTGGAGAATGTGAACCCTGGTCACGAGGTTGTGAAGttttttttGTTCTACGAGAGA 932
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 849 AAGGTGGAGAATGTGAACCCCGGTCACGAGGTTGTGAAGTTTTTCTTGTTCTACGAGAGA 908
Query 933 TGGAGACGGGGCGAGGTTGAGAACTCTGAGGCATACACAGCAAGCCTCAAAGCTTCAGT- 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 909 TGGAGACGGGGCGAGGTTGAGAACTCTGAGGCATACACAGCAAGCCTCAAAGCTTCA-TC 967
Query 992 TCACCCCGGTGGTGTGTTTGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACCAT 1051
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TCACCCCGGTGGTGTGTTCGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACCAT 1027
Query 1052 CGATGAGCTGCGCAAGTACCATGGAGACAAACAAGGGAAGAAGTTTCGCGTTTGGGCAGA 1111
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1028 TGATGAGCTGCGCAAGTACCATGGAGACAAACAAGGGAAGAAGTTTCGGGTTTGGGCAGA 1087
Query 1112 TCAAGTCCTGGCAACAGACACTACTCCTGGGACATGGATAGTAAAGCTTGATAAATGGGA 1171
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1088 TCAAGTCCTGGCAACAGACACTACCCCTGGGACATGGATAGTAAAGCTTGATAAATGGGA 1147
Query 1172 GCAAGATGGGGACGAACGAAGATGCTGCACAACAACTGTCAAATTCACCTCAAAGGAAGG 1231
|||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1148 GCAAGATGGGGACGAACGCAGATGCTGCACAACGACTGTCAAATTCACCGCAAAGGAAGG 1207
Query 1232 GGAGGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGAAAGAAACAATGGTGAAGGA 1291
||| |||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1208 GGAAGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGGAAGAATCAAAGGTGAAGGA 1267
Query 1292 TGATAGCAGCTGGATCATCTGAGT 1315
||||||||||||||||||||||||
Sbjct 1268 TGATAGCAGCTGGATCATCTGAGT 1291
> Ahg914277 jgi|Araly1|914277|Al_scaffold_0001_4531
Length=1275
Score = 1230 bits (666), Expect = 0.0
Identities = 1087/1289 (84%), Gaps = 34/1289 (3%)
Strand=Plus/Plus
Query 45 ATGGAGCGTCTAACATCTCCTCCTCGTTTGATGATTGTCTCTGATCTTGATC-ATACTAT 103
|||||||| ||||||||| |||||||| | ||||| ||||| |||||||| | | || ||
Sbjct 1 ATGGAGCGGCTAACATCTTCTCCTCGTCTAATGATAGTCTCAGATCTTGA-CGAAACAAT 59
Query 104 GGTTGATCATCAT---GATCCTGAGAATCTATCTCTGCTGAGATTCAATTCGTTGTGGGA 160
||||||||||||| ||||| |||||||||||||| |||| || ||||| ||||||||
Sbjct 60 GGTTGATCATCATAAAGATCCAGAGAATCTATCTCTATTGAGGTTTAATTCATTGTGGGA 119
Query 161 ACACGCTTATCGCCATGACTCTCTTCTTGTGTTT-TCTACGGGAAGATCACCGACATTGT 219
| |||||||||| || || ||||||||||| ||| || || |||||| ||| ||| |||
Sbjct 120 AGACGCTTATCGACACGATTCTCTTCTTGT-TTTCTCAACCGGAAGAGCACAAACAATGT 178
Query 220 ATAAAGAACTCAGAAAGGAGAAACCTTTGTTGACCCCTGATATTACCATTATGTCTGTAG 279
| ||| |||| ||||| ||||| |||||||| ||||||||| ||| |||| |||||||
Sbjct 179 ACAAAAAACTGAGAAAAGAGAAGCCTTTGTTAACCCCTGATGTTATTATTACATCTGTAG 238
Query 280 GAACTGAGATTACTTATGGTAACTCTATGGTTCCTGATCATGGTTGGGTTG-AGGCTCTG 338
||||||||||| ||||||||||||| ||||||| |||| || |||||||| | || ||
Sbjct 239 GAACTGAGATTGCTTATGGTAACTCCATGGTTCTTGATGATAATTGGGTTGAAATCT-TG 297
Query 339 AACAATAAATGGGATTTG-GGTATTGTCAAACAAGAAGCTAGCAACTTCCCTGAGTTAAA 397
|| || |||||||| | || || ||| || ||||| | ||||| |||||||||||||
Sbjct 298 AATAACAAATGGGA-CCGAGGAATCGTCGAAGAAGAAACCAGCAAGTTCCCTGAGTTAAC 356
Query 398 GCTTCAGGCAGAAACTGAGCAGAGGCCACACAAGGTTAGCTTTT-ATGTTGA-AAAGAGT 455
||||||| |||||||| ||||||||||||||| |||| |||| | |||| ||| |||
Sbjct 357 TCTTCAGGGTGAAACTGAACAGAGGCCACACAAGCTTAG-TTTTAACATTGACAAA-AGT 414
Query 456 AAGGCTCAGGAAGTTACTAAGGAGCTATCACAGAGGTTCCTGAAACGTGGGCTGGATGTC 515
|||| | ||| ||| |||||||||||||| ||| |||| |||||| ||| ||||| ||
Sbjct 415 AAGGTTAAGGCAGTGACTAAGGAGCTATCTCAGCGGTTGGAGAAACGCGGGGTGGATATC 474
Query 516 AAAATAATTTACAGTGGAGGTATGGATTTGGATATTTTACCACAAGGTGCCGGAAAGGGA 575
|| ||||||| ||||||||| | | ||| ||| |||||||| |||||| |||||||||
Sbjct 475 AAGATAATTTTCAGTGGAGGAAACGCTTTCGATGTTTTACCAAAAGGTGGAGGAAAGGGA 534
Query 576 CAAGCGCTTGCATATCTGCTGAAGAAACTGAAGACTGAGGGGAAACTCCCTGTCAATACT 635
||||| ||||| |||||||| ||||| ||||||||||| || |||| |||||| || |||
Sbjct 535 CAAGCTCTTGCTTATCTGCTAAAGAAGCTGAAGACTGAAGGAAAACACCCTGTTAACACT 594
Query 636 CTTGCTTGTGGCGACTCTGGGAATGATGCTGAGCTGTTTAGTATTCCCGATGTTTATGGT 695
||||||||||| |||||||| |||||| |||| || |||| |||||| |||||||||||
Sbjct 595 CTTGCTTGTGGGGACTCTGGAAATGATACTGAACTATTTACCATTCCCAATGTTTATGGT 654
Query 696 GTTATGGTAAGCAATGCTCAAGAAGAGCTGTTGAAGTGGCATGCTGAAAATGCAAAAGAC 755
|| |||||||||||||||||||||||| ||||| ||||| ||||||||||||| |||||
Sbjct 655 GTCATGGTAAGCAATGCTCAAGAAGAGTTGTTGGAGTGGTATGCTGAAAATGCGAAAGAG 714
Query 756 AACCCTAAGGTAATCCATGCAAAGGAGAGGTGTGCAGGTGGGATTATACAAGCCATTGGT 815
|| || || ||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 715 AATCCAAACATAATCCACGCAAATGAGAGGTGTGCGGGTGGGATTATACAAGCCATTGGT 774
Query 816 CACTTCAAGCTTGGTCCGAACCTTTCTCCAAGAGATGTCTCTGATTTCTTAGAGAT-CAA 874
||||| ||||| ||||| ||||| |||||||||||||| ||||| ||||| ||| | |||
Sbjct 775 CACTTTAAGCTCGGTCCAAACCTATCTCCAAGAGATGTTTCTGACTTCTTGGAG-TGCAA 833
Query 875 GGTGGAGAATGTGAACCCTGGTCACGAGGTTGTGAAGttttttttGTTCTACGAGAGATG 934
|| ||| ||||||||||| ||||| |||||||| |||||||| |||||||||||||||||
Sbjct 834 GGCGGATAATGTGAACCCGGGTCATGAGGTTGTCAAGTTTTTCTTGTTCTACGAGAGATG 893
Query 935 GAGACGGGGCGAGGTTGAGAACTCTGAGGCATACACAGCAAGCCTCAAAGCTTCA-GTTC 993
|||||| || || |||||||||| |||| |||||||||||||||||||||||||| || |
Sbjct 894 GAGACGAGGTGAAGTTGAGAACTGTGAGACATACACAGCAAGCCTCAAAGCTTCATGT-C 952
Query 994 ACCCCGGTGGTGTGTTTGTCCATCCATCTGGTACTGAAAAATCTCTGAGAGATACCATCG 1053
| || | |||||| ||||| |||||||||||| ||||| ||||| ||||| ||||| |
Sbjct 953 ATCCTGCTGGTGTCTTTGTTCATCCATCTGGTGGAGAAAAGTCTCTCAGAGACACCATTG 1012
Query 1054 ATGAGCT-GCGCAAGTACCATGGAGACAA-ACAAGGGAAGAAGTTTCGCGTTTGGGCAGA 1111
||||||| | | |||||| ||||||||| | |||||||||||||||| |||||| ||||
Sbjct 1013 ATGAGCTTG-GAAAGTACTATGGAGACATGA-AAGGGAAGAAGTTTCGGGTTTGGACAGA 1070
Query 1112 TCAAGTCCTGGCAACAGACACTACTCCTGGGACATGGATAGTAAAGCTTGATAAATGGGA 1171
||| ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1071 TCAGGTCCTGGCAACTGACACAACTCCAGGGACTTGGATAGTAAAGCTTGATAAATGGGA 1130
Query 1172 GCAAGAT-GGGGACGA-ACGAAGATGCTGCACAACAACTGTCAAATTCACCTCAAAGGAA 1229
||| ||| ||||| || | ||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1131 GCA-GATAGGGGATGAGAGGAA-ATGCTGCACAACAACGGTCAAATTCACCTCAAAGGAA 1188
Query 1230 GGGGA-GGGATTGGTGTGGGAACATGTACAACAAACCTGGTCGAAAGAAACA-ATGGT-- 1285
|| || ||| ||| ||||||||||||| || |||| |||||| | |||||| | | |
Sbjct 1189 GGAGAAGGGTTTG-TGTGGGAACATGTGCAGCAAATATGGTCGGAGGAAACAGA-GATAA 1246
Query 1286 -GAAGGATGATAGCAGCTGGATCATCTGA 1313
|||||||||||||| |||||||||||||
Sbjct 1247 AGAAGGATGATAGCAACTGGATCATCTGA 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57744811420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5