BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35850.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482556 jgi|Araly1|482556|fgenesh2_kg.4__1616__AT2G35850.1 339 7e-93
> Ahg482556 jgi|Araly1|482556|fgenesh2_kg.4__1616__AT2G35850.1
Length=246
Score = 339 bits (183), Expect = 7e-93
Identities = 229/249 (92%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 1 ATGGAGAGCTCAATTGGGTTCATGACAGTCTTCGCCGTCTCTGGAAGCGTGGTGCTTCTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAGAGCTCAATTGGGTTCATGACAGTCTTCGCCGTCTCTGGAAGTGTGGTGCTTCTT 60
Query 61 GCAGCTCAGCTTCACAAGCGTCTCCTCTCTGGTTACATGGACAAGCTCGAACCT---C-- 115
|| |||||||||||||||||||||||||||| ||| |||||||||||||| ||| |
Sbjct 61 GCGGCTCAGCTTCACAAGCGTCTCCTCTCTGATTATATGGACAAGCTCGAGCCTCAACAT 120
Query 116 -CTACTAAGgaaagaaagaa-a--aagaaaaagaaagTGAGCTTTGCAGAAGATATGGTG 171
||| ||||||||||||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct 121 TCTAATAAGGAAAGAAAGAAGACGAAGAAGAAGAAGGTGAGCTTTGCAGAAGATATGGTG 180
Query 172 GAGCCGTCAGGGAACAACGAAGAGTATCGCCGGAGTTTTCGCAAATCATCAAAGTTGGAG 231
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 181 GAGCCGTCAGGGAACAACGAAGAGTATCGCCGGAGTTTTCGCAAATC--CAA-GTTGGAG 237
Query 232 GATGAAAGA 240
|||||||||
Sbjct 238 GATGAAAGA 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5