BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35850.1 Length=243 Score E Sequences producing significant alignments: (Bits) Value Ahg482556 jgi|Araly1|482556|fgenesh2_kg.4__1616__AT2G35850.1 339 7e-93 > Ahg482556 jgi|Araly1|482556|fgenesh2_kg.4__1616__AT2G35850.1 Length=246 Score = 339 bits (183), Expect = 7e-93 Identities = 229/249 (92%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 1 ATGGAGAGCTCAATTGGGTTCATGACAGTCTTCGCCGTCTCTGGAAGCGTGGTGCTTCTT 60 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGGAGAGCTCAATTGGGTTCATGACAGTCTTCGCCGTCTCTGGAAGTGTGGTGCTTCTT 60 Query 61 GCAGCTCAGCTTCACAAGCGTCTCCTCTCTGGTTACATGGACAAGCTCGAACCT---C-- 115 || |||||||||||||||||||||||||||| ||| |||||||||||||| ||| | Sbjct 61 GCGGCTCAGCTTCACAAGCGTCTCCTCTCTGATTATATGGACAAGCTCGAGCCTCAACAT 120 Query 116 -CTACTAAGgaaagaaagaa-a--aagaaaaagaaagTGAGCTTTGCAGAAGATATGGTG 171 ||| ||||||||||||||| | ||||| ||||| |||||||||||||||||||||||| Sbjct 121 TCTAATAAGGAAAGAAAGAAGACGAAGAAGAAGAAGGTGAGCTTTGCAGAAGATATGGTG 180 Query 172 GAGCCGTCAGGGAACAACGAAGAGTATCGCCGGAGTTTTCGCAAATCATCAAAGTTGGAG 231 ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| Sbjct 181 GAGCCGTCAGGGAACAACGAAGAGTATCGCCGGAGTTTTCGCAAATC--CAA-GTTGGAG 237 Query 232 GATGAAAGA 240 ||||||||| Sbjct 238 GATGAAAGA 246 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8401417420 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5