BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35890.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345321 jgi|Araly1|345321|fgenesh1_pg.C_scaffold_4001663 2344 0.0
> Ahg345321 jgi|Araly1|345321|fgenesh1_pg.C_scaffold_4001663
Length=1581
Score = 2344 bits (1269), Expect = 0.0
Identities = 1484/1585 (94%), Gaps = 26/1585 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAATGTATGTGTTCATATGGTCAACAATTGTGTGGATACGAAATCGAATTCATGG 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGGGAATGTATGTGTTCATATGGTCAACAATTGTGTGGATACGAAATCAAATTCATGG 60
Query 61 GTTCGTCCCACAGATCTCATCATGGATCATCCCTTGAAGCCACAACTCCAGGACAAGCCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GTTCGTCCCACAGATCTCATCATGGATCATCCCTTGAAGCCACAACTCCAAGACAAGCCT 120
Query 121 CCTCAGCCAATGCTAATGAACAAGGATGATGATAAAACCAAGCTTAATGACACTCATGGT 180
|||| ||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct 121 CCTCGGCCAATGCTAATGTACAAGGATGATGATAAACCCAAGCTTAATGAAACTCATGGA 180
Query 181 GACCCTAAATTACTTGAGGGGAAAG-AGAAACCTGCGCAGAAGCAAACGAG-T-----C- 232
||||||||||||||||| | ||| | | ||||||||||||||||||||||| | |
Sbjct 181 GACCCTAAATTACTTGAAGAGAAGGCA-AAACCTGCGCAGAAGCAAACGAGTTGGGAACA 239
Query 233 AG--GGACA-AG-GAG-G-------AAGGAAGTGCAGTGACGAAGAGTATAAGAAGCGAG 280
|| ||| | | ||| | || |||||||||||| |||||| |||||||||| |
Sbjct 240 AGAAGGA-AGGGTGAGTGAAACAACAAAGAAGTGCAGTGAAGAAGAGAATAAGAAGCGTG 298
Query 281 CGATTGCGTGTGCTAACAGTAAAAGAAAGGCTCACAATGTGAGGAGACTGATGAGTGCAG 340
|||||||||||| |||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 299 CGATTGCGTGTGGTAACAGCAAAAGAAAAGCTCACAACGTAAGGAGACTGATGAGTGCAG 358
Query 341 GGCTACAAGCAGAGTCAGTGTTGAAGACCAAAACAGGGCATTTGAAGGAATATTATAACT 400
|||| |||||||||||||| ||||||||||| || ||||||||||| || ||||||||||
Sbjct 359 GGCTTCAAGCAGAGTCAGTATTGAAGACCAAGACGGGGCATTTGAAAGAGTATTATAACT 418
Query 401 TGGGTAGCAAGTTAGGTCATGGACAGTTTGGGACTACGTTTGTGTGTGTTGAGAAAGGAA 460
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 419 TGGGAAGCAAGTTAGGTCATGGACAGTTTGGGACGACGTTCGTGTGTGTTGAGAAAGGAA 478
Query 461 CAGGGGAGGAATATGCATGCAAGTCGATTCCGAAGAGGAAGCTAGAGAACGAAGAAGACG 520
||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 479 CAGGGGAGGAATACGCGTGCAAGTCTATACCGAAGAGGAAGCTAGAGAACGAAGAAGACG 538
Query 521 TGGAGGATGTGAGAAGAGAGATTGAGATAATGAAACATCTCTTGGGGCAACCAAATGTGA 580
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGAGGATGTAAGAAGAGAGATTGAGATAATGAAACATCTCTTGGGGCAACCAAATGTGA 598
Query 581 TCTCCATCAAAGGAGCTTATGAGGACTCAGTGGCTGTTCACATGGTGATGGAGCTGTGTA 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTCCATCAAAGGAGCTTATGAGGACTCAGTGGCTGTTCACATGGTGATGGAGCTGTGTA 658
Query 641 GAGGAGGTGAGCTGTTTGATAGGATAGTGGAGAGAGGGCATTACTCTGAGAGAAAAGCTG 700
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 659 GAGGAGGTGAGCTGTTTGATAGAATAGTGGAGAGAGGGCATTACTCTGAGAGAAAAGCAG 718
Query 701 CTCATTTGGCTAAAGTCATACTTGGTGTGGTTCAGACTTGTCATTCTTTAGGTGTGATGC 760
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 719 CTCATTTGGCTAAGGTCATACTTGGTGTGGTCCAGACTTGTCATTCTTTAGGTGTGATGC 778
Query 761 ACAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAACGATGACGAGGATTCGCCTCTTA 820
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 779 ATAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAACGATCACGAGGATTCGCCTCTTA 838
Query 821 AGGCTATTGATTTCGGGTTATCTATGTTTC-TCAAGCCTGGAGAAAACTTTACGGATGTG 879
||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 839 AGGCTATTGATTTTGGGTTATCTATGTT-CGTCAAGCCTGGAGAAAACTTTACGGATGTG 897
Query 880 GTTGGAAGTCCCTACTACATTGCGCCTGAAGTTCTGAACAAGAATTACGGTCCAGAAGCA 939
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 898 GTTGGAAGTCCCTACTACATTGCGCCTGAAGTTCTCAACAAGAATTACGGTCCAGAAGCA 957
Query 940 GATATATGGAGCGCAGGTGT-GATGATTTACGTGTTACTGTCTGGTTCAGCTCCGTTTTG 998
||||| |||||||| ||||| | ||||||| ||| ||||||||||||||||||| |||||
Sbjct 958 GATATTTGGAGCGCCGGTGTTG-TGATTTATGTGCTACTGTCTGGTTCAGCTCCATTTTG 1016
Query 999 GGGAGAAACGGAAGAAGAAATCTTCAATGAGGTTCTGGAGGGTGAGCTTGATTTGACATC 1058
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1017 GGGAGAGACGGAAGAAGAAATCTTCAATGAGGTTCTGGACGGTGAGCTTGATTTGTCATC 1076
Query 1059 AGATCCTTGGCCACAAGTCTCTGAAAGCGCAAAAGATTTGATCAGAAAGATGCTTGAAAG 1118
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1077 AGATCCTTGGCCACAAGTTTCTGAAAGCGCAAAAGATTTGATCAGAAAGATGCTCGAACG 1136
Query 1119 AAATCCCATACAAAGACTCACTGCTCAACAAGTATTATGCCATCCATGGATTAGGGATGA 1178
|||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1137 AAATCCCAAACAAAGACTCACTGCTCAACAAGTCTTGTGCCATCCATGGATTAGGGATGA 1196
Query 1179 AGGAAATGCACCAGATACACCACTTGACACAACTGTGTTGAGTCGCTTGAAGAAGTTTTC 1238
||||| ||||||||||||||| |||||||| ||||| |||||||||||||||||||||||
Sbjct 1197 AGGAACTGCACCAGATACACCGCTTGACACGACTGTTTTGAGTCGCTTGAAGAAGTTTTC 1256
Query 1239 AGCAACAGACAAGCTTAAGAAGATGGCTTTAAGGGTGATTGCAGAAAGGCTTTCCGAAGA 1298
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1257 AGCTACAGACAAGCTCAAGAAGATGGCTTTAAGGGTGATTGCAGAAAGGCTTTCCGAACA 1316
Query 1299 AGAGATTCACGAGCTCAGAGAAACATTCAAGACTATAGACAGTGGAAAGAGCGGGCGAGT 1358
||||||||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1317 AGAGATTCACGAGCTTAGAGAAACCTTCAAGATTATAGACAGTGAAAAGAGCGGGCGAGT 1376
Query 1359 AACTTATAAAGAACTCAAAAACGGTCTTGAAAGATTTAACACAAATCTTGACAACTCTGA 1418
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1377 AACTTATAAAGAACTCAAAAGTGGTCTTGAAAGATTTAACACAAATCTTGACGACTCTGA 1436
Query 1419 CATCAATAGTCTTATGCAAATACCAACGGATGTGCACTTGGAAGACACAGTAGACTACAA 1478
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1437 CATCAATAGTCTTATGCAAATGCCAACGGATGTGCACTTGGAAGACACAGTAGACTACGA 1496
Query 1479 CGAATTCATAGAGGCGATTGTAAGACTGAGACAAATACAAGAAGAGGAAGCAAATGATCG 1538
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1497 GGAATTCATAGAGGCGATTGTAAGACTGAGACAAATACAAGAAGAGGAACCAAAGGATCG 1556
Query 1539 TTTAGAATCATCAACAAAAGTGTAA 1563
|||||||||||||||||||||||||
Sbjct 1557 TTTAGAATCATCAACAAAAGTGTAA 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5