BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35890.1 Length=1563 Score E Sequences producing significant alignments: (Bits) Value Ahg345321 jgi|Araly1|345321|fgenesh1_pg.C_scaffold_4001663 2344 0.0 > Ahg345321 jgi|Araly1|345321|fgenesh1_pg.C_scaffold_4001663 Length=1581 Score = 2344 bits (1269), Expect = 0.0 Identities = 1484/1585 (94%), Gaps = 26/1585 (2%) Strand=Plus/Plus Query 1 ATGGGGAATGTATGTGTTCATATGGTCAACAATTGTGTGGATACGAAATCGAATTCATGG 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGGGGAATGTATGTGTTCATATGGTCAACAATTGTGTGGATACGAAATCAAATTCATGG 60 Query 61 GTTCGTCCCACAGATCTCATCATGGATCATCCCTTGAAGCCACAACTCCAGGACAAGCCT 120 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 GTTCGTCCCACAGATCTCATCATGGATCATCCCTTGAAGCCACAACTCCAAGACAAGCCT 120 Query 121 CCTCAGCCAATGCTAATGAACAAGGATGATGATAAAACCAAGCTTAATGACACTCATGGT 180 |||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| Sbjct 121 CCTCGGCCAATGCTAATGTACAAGGATGATGATAAACCCAAGCTTAATGAAACTCATGGA 180 Query 181 GACCCTAAATTACTTGAGGGGAAAG-AGAAACCTGCGCAGAAGCAAACGAG-T-----C- 232 ||||||||||||||||| | ||| | | ||||||||||||||||||||||| | | Sbjct 181 GACCCTAAATTACTTGAAGAGAAGGCA-AAACCTGCGCAGAAGCAAACGAGTTGGGAACA 239 Query 233 AG--GGACA-AG-GAG-G-------AAGGAAGTGCAGTGACGAAGAGTATAAGAAGCGAG 280 || ||| | | ||| | || |||||||||||| |||||| |||||||||| | Sbjct 240 AGAAGGA-AGGGTGAGTGAAACAACAAAGAAGTGCAGTGAAGAAGAGAATAAGAAGCGTG 298 Query 281 CGATTGCGTGTGCTAACAGTAAAAGAAAGGCTCACAATGTGAGGAGACTGATGAGTGCAG 340 |||||||||||| |||||| |||||||| |||||||| || ||||||||||||||||||| Sbjct 299 CGATTGCGTGTGGTAACAGCAAAAGAAAAGCTCACAACGTAAGGAGACTGATGAGTGCAG 358 Query 341 GGCTACAAGCAGAGTCAGTGTTGAAGACCAAAACAGGGCATTTGAAGGAATATTATAACT 400 |||| |||||||||||||| ||||||||||| || ||||||||||| || |||||||||| Sbjct 359 GGCTTCAAGCAGAGTCAGTATTGAAGACCAAGACGGGGCATTTGAAAGAGTATTATAACT 418 Query 401 TGGGTAGCAAGTTAGGTCATGGACAGTTTGGGACTACGTTTGTGTGTGTTGAGAAAGGAA 460 |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 419 TGGGAAGCAAGTTAGGTCATGGACAGTTTGGGACGACGTTCGTGTGTGTTGAGAAAGGAA 478 Query 461 CAGGGGAGGAATATGCATGCAAGTCGATTCCGAAGAGGAAGCTAGAGAACGAAGAAGACG 520 ||||||||||||| || |||||||| || ||||||||||||||||||||||||||||||| Sbjct 479 CAGGGGAGGAATACGCGTGCAAGTCTATACCGAAGAGGAAGCTAGAGAACGAAGAAGACG 538 Query 521 TGGAGGATGTGAGAAGAGAGATTGAGATAATGAAACATCTCTTGGGGCAACCAAATGTGA 580 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TGGAGGATGTAAGAAGAGAGATTGAGATAATGAAACATCTCTTGGGGCAACCAAATGTGA 598 Query 581 TCTCCATCAAAGGAGCTTATGAGGACTCAGTGGCTGTTCACATGGTGATGGAGCTGTGTA 640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCTCCATCAAAGGAGCTTATGAGGACTCAGTGGCTGTTCACATGGTGATGGAGCTGTGTA 658 Query 641 GAGGAGGTGAGCTGTTTGATAGGATAGTGGAGAGAGGGCATTACTCTGAGAGAAAAGCTG 700 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct 659 GAGGAGGTGAGCTGTTTGATAGAATAGTGGAGAGAGGGCATTACTCTGAGAGAAAAGCAG 718 Query 701 CTCATTTGGCTAAAGTCATACTTGGTGTGGTTCAGACTTGTCATTCTTTAGGTGTGATGC 760 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 719 CTCATTTGGCTAAGGTCATACTTGGTGTGGTCCAGACTTGTCATTCTTTAGGTGTGATGC 778 Query 761 ACAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAACGATGACGAGGATTCGCCTCTTA 820 | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 779 ATAGAGATCTTAAACCTGAGAACTTTCTCTTTGTCAACGATCACGAGGATTCGCCTCTTA 838 Query 821 AGGCTATTGATTTCGGGTTATCTATGTTTC-TCAAGCCTGGAGAAAACTTTACGGATGTG 879 ||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 839 AGGCTATTGATTTTGGGTTATCTATGTT-CGTCAAGCCTGGAGAAAACTTTACGGATGTG 897 Query 880 GTTGGAAGTCCCTACTACATTGCGCCTGAAGTTCTGAACAAGAATTACGGTCCAGAAGCA 939 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 898 GTTGGAAGTCCCTACTACATTGCGCCTGAAGTTCTCAACAAGAATTACGGTCCAGAAGCA 957 Query 940 GATATATGGAGCGCAGGTGT-GATGATTTACGTGTTACTGTCTGGTTCAGCTCCGTTTTG 998 ||||| |||||||| ||||| | ||||||| ||| ||||||||||||||||||| ||||| Sbjct 958 GATATTTGGAGCGCCGGTGTTG-TGATTTATGTGCTACTGTCTGGTTCAGCTCCATTTTG 1016 Query 999 GGGAGAAACGGAAGAAGAAATCTTCAATGAGGTTCTGGAGGGTGAGCTTGATTTGACATC 1058 |||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1017 GGGAGAGACGGAAGAAGAAATCTTCAATGAGGTTCTGGACGGTGAGCTTGATTTGTCATC 1076 Query 1059 AGATCCTTGGCCACAAGTCTCTGAAAGCGCAAAAGATTTGATCAGAAAGATGCTTGAAAG 1118 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | Sbjct 1077 AGATCCTTGGCCACAAGTTTCTGAAAGCGCAAAAGATTTGATCAGAAAGATGCTCGAACG 1136 Query 1119 AAATCCCATACAAAGACTCACTGCTCAACAAGTATTATGCCATCCATGGATTAGGGATGA 1178 |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 1137 AAATCCCAAACAAAGACTCACTGCTCAACAAGTCTTGTGCCATCCATGGATTAGGGATGA 1196 Query 1179 AGGAAATGCACCAGATACACCACTTGACACAACTGTGTTGAGTCGCTTGAAGAAGTTTTC 1238 ||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| Sbjct 1197 AGGAACTGCACCAGATACACCGCTTGACACGACTGTTTTGAGTCGCTTGAAGAAGTTTTC 1256 Query 1239 AGCAACAGACAAGCTTAAGAAGATGGCTTTAAGGGTGATTGCAGAAAGGCTTTCCGAAGA 1298 ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| | Sbjct 1257 AGCTACAGACAAGCTCAAGAAGATGGCTTTAAGGGTGATTGCAGAAAGGCTTTCCGAACA 1316 Query 1299 AGAGATTCACGAGCTCAGAGAAACATTCAAGACTATAGACAGTGGAAAGAGCGGGCGAGT 1358 ||||||||||||||| |||||||| ||||||| ||||||||||| ||||||||||||||| Sbjct 1317 AGAGATTCACGAGCTTAGAGAAACCTTCAAGATTATAGACAGTGAAAAGAGCGGGCGAGT 1376 Query 1359 AACTTATAAAGAACTCAAAAACGGTCTTGAAAGATTTAACACAAATCTTGACAACTCTGA 1418 |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 1377 AACTTATAAAGAACTCAAAAGTGGTCTTGAAAGATTTAACACAAATCTTGACGACTCTGA 1436 Query 1419 CATCAATAGTCTTATGCAAATACCAACGGATGTGCACTTGGAAGACACAGTAGACTACAA 1478 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 1437 CATCAATAGTCTTATGCAAATGCCAACGGATGTGCACTTGGAAGACACAGTAGACTACGA 1496 Query 1479 CGAATTCATAGAGGCGATTGTAAGACTGAGACAAATACAAGAAGAGGAAGCAAATGATCG 1538 |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 1497 GGAATTCATAGAGGCGATTGTAAGACTGAGACAAATACAAGAAGAGGAACCAAAGGATCG 1556 Query 1539 TTTAGAATCATCAACAAAAGTGTAA 1563 ||||||||||||||||||||||||| Sbjct 1557 TTTAGAATCATCAACAAAAGTGTAA 1581 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58544706565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5