BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35900.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934215 jgi|Araly1|934215|scaffold_402203.1 961 0.0
> Ahg934215 jgi|Araly1|934215|scaffold_402203.1
Length=619
Score = 961 bits (520), Expect = 0.0
Identities = 589/622 (95%), Gaps = 6/622 (1%)
Strand=Plus/Plus
Query 94 TCTCATCACGAATTTTAGCTATGGGTTGGATCTGGATTGACGATTCATCCGCCTCTAAAG 153
||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||
Sbjct 1 TCTCATCACGAATTTTAGCTATGGGTTGGGTCTGGATTGACGATGCATCTGCCGCTAAAG 60
Query 154 CCGGTGCTGATCTCACCGATAAACCGCTCGGAGATT-CTGCCGCCGCCGCCGAAAATTGC 212
||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 61 CCGGTACTGATCTCACCGATAAACCGCTCGGAGATTCCT-CCGCCGCCGCCGGAAATTGC 119
Query 213 TCCACGACCACGGTGGTAAGATCTCAGTGCAAGACGGAGGAGGTCGAGCCTGGAAAGTTC 272
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 120 TCCACCACCACGGTGGTAAGATCGCAGTGCAAGACGGAGGAGGTTGAGCCTGGAAAGTTC 179
Query 273 GTCAGGAAATGCGACAAAACAGAAGAAATCCTCCGCCACTGTTTTGGGAAGCCCTCTGAA 332
|| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||
Sbjct 180 GTTAGGAAATGCGACAAAACAGAGGAGATCCTCCGCCACTGTTTTGGGAAGCCGTCTGAA 239
Query 333 GTCGTTCAATCCAACACAGAGCACACAGAAGAGGATGTGACAGACCAGATGGT-GGGAAG 391
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||
Sbjct 240 GTCGTTCAATCCAACACAGAGCACACAGAAGAAGATGTGACAGACCAGATGGTAGGG-AG 298
Query 392 ATCCGCTCTTCCGAATCAGTTTGAGGATAA-AAACCCGCTAAACTTCCCGGGACTCCGCA 450
||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 299 ATCCGCTCTTCCGAATCAGTTTGAGGA-AAGAAACCCGCTAAACTTCCCTGGACTCCGCA 357
Query 451 GAGATGTAGACGCCATCGAACGCCATTTCTTGAGCGGAATGAAGAGTTTCTTTGATGCGG 510
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 358 GAGATGTAGACGCCATCGAACGCCATTTCTTGAGCGGAATGAAGAATTTCTTTGATGCAG 417
Query 511 CTGAAGAGATGACAAGCAGCTTATTTGATATCATGGGAGACCATCACCCAAGCACCAGGA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CTGAAGAGATGACAAGCAGCTTATTTGATATCATGGGAGACCATCACCCAAGCACCAGGA 477
Query 571 GAGGAGGGATACCCATTGAAAACCATCCCAAGGTAGAGGAGCACCGCAATGACGAAACTG 630
|||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||
Sbjct 478 GAGGAGGGATACCCATTGAAAACCATCCTAAGGTAGAGGACCACCGCAATGACAAAACTG 537
Query 631 CCCCTACACGACCACACTCCTCTGGCGAGATTGATCTCTCGGGCTTGGCCAAGGACGTTT 690
|||||| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 538 CCCCTATACGGCCACACTCCTCGGGAGAGATTGATCTCTCGGGCTTGGCCAAGGACGTTT 597
Query 691 GAGAAAGGTCGTCTGcttcttc 712
|||| ||||||| | |||||||
Sbjct 598 GAGAGAGGTCGTGTACTTCTTC 619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5