BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35910.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482561 jgi|Araly1|482561|fgenesh2_kg.4__1621__AT2G35910.1 1480 0.0
> Ahg482561 jgi|Araly1|482561|fgenesh2_kg.4__1621__AT2G35910.1
Length=1060
Score = 1480 bits (801), Expect = 0.0
Identities = 997/1086 (92%), Gaps = 35/1086 (3%)
Strand=Plus/Plus
Query 38 TATTACCAATACAATATTAGAAAATTTATACATTGAA-TAtttttt-tAACCATCCACAA 95
|||||||||||||||||||| |||| |||||||| || | |||||| |||||||||||||
Sbjct 1 TATTACCAATACAATATTAGCAAATGTATACATT-AATTTTTTTTTATAACCATCCACAA 59
Query 96 GTCACACAATTCTTGCTTTGCTTTGACAAGCTTTCTTATCCTCATTCACATGCATTTCCT 155
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GTCACACAA---TT-C-TTGCTTTGACAAGCTTTCTTATCCTCATTCACATGCATTTCCT 114
Query 156 CCCTTTGtctctctctctctctTAGCGTTGACTTTTGATAACCCCAAGATGCTTCAATTT 215
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 115 CCCTTTGTC-C-ATCTCTCTCTTAGCGTTGACTTTTGATAACCCCAAGATGCTTCAATTT 172
Query 216 ACATTGTCTTATATCAAATCGCTGACCAAAAACCTCTCCATTATTTCTCCTCTTCCTCCT 275
||||||||||||||||||| ||||||| |||||||||||||||||||| | |||||| |
Sbjct 173 ACATTGTCTTATATCAAATGGCTGACC--AAACCTCTCCATTATTTCTCTTATTCCTCTT 230
Query 276 CCCAAACCCATTAAACAAA-ACCATCAAACC-AAACCCGCCATGAACAATTTCCAACCAC 333
|| |||||||||||||||| |||||||||| || |||||||||||| ||||||||||
Sbjct 231 CCAAAACCCATTAAACAAACTCCATCAAACCGCAA-CCGCCATGAACACCTTCCAACCAC 289
Query 334 CGCCACCGTCC-GAGATGCCGGACTACAACGGCCTCCTCGGCACGGACGACATAGGAGGA 392
|||||||| || |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 290 CGCCACCG-CCGGAGATGCCGGACTACAACGGCCTCCTCGGCACAGACGACATCGGAGGA 348
Query 393 TTTCGATACGGAATCGGTGTCTCCATCGGGGTCCTCCTCCTCATCACCACCATCACCCTC 452
||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 349 TTTCGATACGGAATCGGAGTCTCCATTGGAGTGCTCCTCCTCATCACCACCATCACCCTC 408
Query 453 ACCTCATACTATTGCACACGTAACCAGCTCTCTTCTTCACCTTCACAAACCAACCAAGAT 512
||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 409 ACCTCCTACTATTGCACACGTAACCAGCTCTCTTCTTCACCTTCACAGACCAGTCAAGAT 468
Query 513 TCAACACGTATCCATCACCATCACCACCATGTCATCATCGACGTTGTCCCCGGTCTTGAC 572
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TCGACACGTATCCATCATCATCACCACCATGTCATCATCGACGTTGTCCCCGGTCTTGAC 528
Query 573 GAGGACACCATTCAAAGCTATCCAAAGATTCTCTACTCGGAAGCAAAGGGACCAACAACG 632
|| |||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 529 GAAGACACCATTCAAAGCTATCCTAAGATCCTCTACTCAGAAGCAAAGGGACCAACAACG 588
Query 633 GCGTCGTGTTGTGCCATTTGTTTAGGAGACTACAAGGGAAAACATCTGCTGCGGCAGCTA 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GCGTCGTGTTGTGCCATTTGTTTAGGAGACTACAAGGGAAAACATCTGCTGCGGCAGCTA 648
Query 693 CCAGATTGCAACCATCTCTTCCACCTTAAATGTATCGACACGTGGCTTAGACTCAATCCT 752
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 649 CCAGATTGCAACCATCTCTTCCACCTTAAATGTATTGACACGTGGCTTAGACTCAATCCT 708
Query 753 ACGTGTCCTGTGTGTCGGACTTCGCCGCTTCCAACTCCTCTGTCTACTCCCCTCGCCGAG 812
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 709 ACGTGTCCTGTCTGTCGGACTTCGCCGCTTCCAACTCCTCTGTCCACTCCCCTCGCCGAG 768
Query 813 GTTGTCCCTTTAGCCTCCTCCGTGGCCGCCACAAGAATGTCCTAGTGATTT-GTTTATTT 871
|||||||| |||||||||||||| ||||||||||| |||||||| | ||| ||||||||
Sbjct 769 GTTGTCCCCTTAGCCTCCTCCGTCGCCGCCACAAGGATGTCCTAATTTTTTTGTTTATTT 828
Query 872 TATAACCGAAGAAATCGA-AATCTTGACTAATCTCCGGCTTAAACTCGTTATTA-ATTCT 929
|||||||||||||| | ||||| |||||||||||||||||||| |||| | |||||
Sbjct 829 TATAACCGAAGAAAGCCTCAATCTA-ACTAATCTCCGGCTTAAACTATTTATCATATTCT 887
Query 930 TCTTTTAATTCCTTGTAAATTTGTT-ATTTTTGGTCACTAACTGATCACTGTATATACAC 988
||||| |||||||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 888 TCTTT-AATTCCTTGTAAATTTATTTATTTT-GGTCACTAACTGATCACTGTATATAT-- 943
Query 989 TCTTCGAAGCCGAAGATTTGTAAGAGAAAGGAGGTTAAGGATGAATTTTTCACAATTTTG 1048
||||||||||||| ||||||||||| |||||||||||||| ||||||||||
Sbjct 944 TCTTCGAAGCCGACTATTTGTAAGAGGAAGGAGGTTAAGGA---------CACAATTTTG 994
Query 1049 TTGGATTAGTTTTTCTTTAAGCAATGTGAACGAGTTTATCTATACATACGTACCAAGAAA 1108
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
Sbjct 995 TTGGATTAGTTTTTCTTTTAGCAATGTGAACGAGTTTATCTATACATACGTATCAAGAGA 1054
Query 1109 GAGTAA 1114
|| |||
Sbjct 1055 GAATAA 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5