BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35930.1
Length=1619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482563 jgi|Araly1|482563|fgenesh2_kg.4__1623__AT2G35930.1 2191 0.0
> Ahg482563 jgi|Araly1|482563|fgenesh2_kg.4__1623__AT2G35930.1
Length=1571
Score = 2191 bits (1186), Expect = 0.0
Identities = 1344/1420 (95%), Gaps = 11/1420 (1%)
Strand=Plus/Plus
Query 1 CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTATTAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 CTAACTTATTCAAACCAATTCACATCTTCCCAAACCCAACTACTACAACTTGTAGCAAGA 60
Query 61 AAAAGATATATTCCCTTAGCTTCTTTGATCAATATATTCGTCAGGGTTCTCGTC--A-A- 116
|||| ||||||| | |||||||||||||||||||||||| || ||||||||||| | |
Sbjct 61 AAAA-ATATATT-CTTTAGCTTCTTTGATCAATATATTCATCTGGGTTCTCGTCAAATAT 118
Query 117 AGTCCTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT 176
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 ATTCTTCAGCATCTTCATCATATGTCCGGAGGAATAATGGATGAAGAGATCGAGATTCCT 178
Query 177 CCGTTCTTCCTTTGTCCTATCTCTTTGGAGATCATGAAAGATCCAGTGATAGTCTCTACC 236
||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 179 CCGTTTTTCCTTTGCCCTATCTCTTTGGAGATCATGAAAGATCCGGTGATAGTGTCTACC 238
Query 237 GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAAGAAA-AACTC 295
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 239 GGAATAACCTACGACAGAGACAGCATCGAGAAATGGCTATTTGCAGGCAA-AAAGAACTC 297
Query 296 GTGTCCGGTCACCAAACAAGACAT-A--ACCGACGCGGATCTCACCCCGAATCACACTCT 352
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 298 GTGTCCGGTCACCAAACAAGACATAATTACCGACGCGGATCTCACCCCGAATCACACTCT 357
Query 353 ACGCCGTCTCATCCAATCTTGGTGCACCCTAAACGCCTCCTACGGCGTCGAGAGGATCCC 412
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 358 TCGCCGTCTCATCCAATCTTGGTGCACTCTAAACGCTTCCTATGGCGTCGAGAGGATCCC 417
Query 413 TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TACCCCAAGACCTCCGATTTGTAAATCTGAGATCGAAAAGCTCATTAGAGATTCAGCCTC 477
Query 473 TTCCCATGAAAACCAAGTCAAGTGTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC 532
||| ||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 478 TTCGCATCAAAACCAAGTCAAATCTCTCAAACGACTTCGTCAGATTGTGTCGGAGAACGC 537
Query 533 GACCAACAAGCGGTGTTTAGAGGCAGCGGGAGTACCGGAGTTCTTGGCCAACATCGTAAG 592
|| ||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 538 GAACAACAAGCGGTGTTTAGAGGCGGCAGGAGTACCGGAGTTCTTGGCCAAGATCGTAAG 597
Query 593 CAACGACTCAGAAAATGGGAGTTTGACCGACGAAGCCCTCAACTTACTTTACCACCTCGA 652
|||||| |||||||||| |||||||||||||||||||||||||||||| ||||| |||||
Sbjct 598 CAACGAATCAGAAAATGAGAGTTTGACCGACGAAGCCCTCAACTTACTCTACCATCTCGA 657
Query 653 GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAAGATAACAATATCGTAAA 712
|||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||
Sbjct 658 GACCTCAGAGACAGTCCTCAAGAATCTTTTAAACAACAAGAAGGGTAATGATATCGTAAA 717
Query 713 GTCGTTGACGAAGATCATGCAGCGTGGGATGTACGAGTCCAGAGTCTATGCCACTTTGCT 772
||||||||||||||||||| || | ||||| |||||||||||||||||||| ||||||||
Sbjct 718 GTCGTTGACGAAGATCATGGAGGGCGGGATCTACGAGTCCAGAGTCTATGCGACTTTGCT 777
Query 773 TCTCAAGAACATTCTCGAAGTAGCGGATCCAATGCAGAGTATGACTCTCAAGCCAGAGGT 832
||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||||
Sbjct 778 TCTCAAGAACATTCTTGAAGTAGCGGATCCAATGCAGATTATGACCCTGAAGCCAGAGGT 837
Query 833 TTTCACTGAGGTCGTCCAGATCTTGGACGACCGGATCTCGCAGAAGGCGACCAAAGCTGC 892
||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 838 TTTCACTGAGGTCGTTCAGATCTTGGACGACCGCATCTCGCAGAAGGCTACCAAAGCTGC 897
Query 893 CATGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACACAAGGCCGTGGAAGC 952
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 898 GTTGCATATATTGGTGAACATATGCCCATGGGGAAGGAACAGACATAAGGCCGTGGAAGC 957
Query 953 TGGAGTAATCTCTGTGATCATCGAGCTTCTCATGGACGAGAGCTTCACATCAGAGAGGAG 1012
|||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 958 TGGAGTGATCTCTGTGATAATCGAGCTTCTCATGGAGGAGAGCTTCACATCAGAGAGGAG 1017
Query 1013 AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 AGGTCCAGAGATGGCGATGGTGGTTCTTGATCTGTTGTGTCAGTGTGCGGAGGGACGAGC 1077
Query 1073 CGAGTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC 1132
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CTATTTCTTGAACCACGGAGCAGCCATAGCGGTGGTGTGCAAGAAGATACTTAGGGTTTC 1137
Query 1133 ACAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCAAC 1192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1138 GCAGACAGCAAGCGATAGAGCGGTTAGGGTTTTGTTGTCGGTGGGAAGGTTCTGCGCCAC 1197
Query 1193 GCCTGCTTTGTTGCACGAGATGTTACAGTTGGGGGTTGTAGCGAAGCTTTGTCTTGTGCT 1252
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 GCCTGCTTTGCTGCACGAGATGTTACAGTTGGGGGTTGTAGCAAAGCTTTGTCTTGTGCT 1257
Query 1253 TCAAGTAAGCTGTGGAGGTAAGACCAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC 1312
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1258 TCAAGTAAGCTGTGGGGGCAAGACTAAAGAGAAGGCAAAGGAGTTGCTTAAGTTGCACGC 1317
Query 1313 TAGGGTCTGGAAGGACTCGCCTTGTCTCCCAAAAAACATGATTCTTGCATATCCCTGCTG 1372
|||||| |||||||||||||||||| | |||||||||||||||||||| ||||| |||||
Sbjct 1318 TAGGGTTTGGAAGGACTCGCCTTGTTTGCCAAAAAACATGATTCTTGCGTATCCTTGCTG 1377
Query 1373 ATGAAAACGAAGAAAACAATACAAACAAGTCCAATTCTCA 1412
|||||||| |||||||||| ||||||||||||||||||||
Sbjct 1378 ATGAAAACCAAGAAAACAACACAAACAAGTCCAATTCTCA 1417
Score = 111 bits (60), Expect = 1e-23
Identities = 146/182 (80%), Gaps = 28/182 (15%)
Strand=Plus/Plus
Query 1438 ATGCTGTTGAAAAAACTAAAGGAGTATTCAATTATTCATATCATTAATCCAATTTTCCTT 1497
||||||||||||||||| | | | | | | ||||||||||||||||||||||||||||
Sbjct 1418 ATGCTGTTGAAAAAACT--A-GTG-A-T--A-TATTCATATCATTAATCCAATTTTCCTT 1469
Query 1498 AGGTTTCTTATTTCGTACTTTTGATGTTCTCAATGTAGATAATAGTGGAAAATGTTCATC 1557
||||||||||| | | | | | |||||||||||||||| ||||||||||||
Sbjct 1470 AGGTTTCTTATGT--T-C-----A----C--AATGTAGATAATAGTGAAAAATGTTCATC 1515
Query 1558 AAATAtttttttttATGAAAAACTGCAAAGATATCATATATAAAATCACAAGTTACCAGG 1617
|||||| |||| |||||||||| ||||||||||| ||| || |||| |||||| |||
Sbjct 1516 GAATATTCTTTT--ATGAAAAACTACAAAGATATCA-ATA-AA--TCACCAGTTACAAGG 1569
Query 1618 CT 1619
||
Sbjct 1570 CT 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60677760285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5