BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35940.1
Length=2706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482564 jgi|Araly1|482564|fgenesh2_kg.4__1624__AT2G35940.3 3801 0.0
> Ahg482564 jgi|Araly1|482564|fgenesh2_kg.4__1624__AT2G35940.3
Length=2911
Score = 3801 bits (2058), Expect = 0.0
Identities = 2356/2492 (95%), Gaps = 52/2492 (2%)
Strand=Plus/Plus
Query 228 TATCAATCCAGCTTGGTGAAAGAAG--G-TCAAGAATTGAAAGAGAATCAAAGAAAACGA 284
||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 458 TATCAAT-CAGCTTGGTGAAAGAAGAAGATCAAGAATTGAAAGAGAATCAAAGAAAACGA 516
Query 285 CGTCGTTTCATTCGTGTGTAACAACTACTAAT-TA-T-A-CATAGATGGCTGCTTACTTT 340
| |||||||||||||||||||||| | | || || | | |||||||||||||||||||
Sbjct 517 CACCGTTTCATTCGTGTGTAACAAC-AGT-ATATACTAATTATAGATGGCTGCTTACTTT 574
Query 341 CACGGAAACCCACCGGAGATCTCTGCCGGATCCGACGGTGGTCTTCAAACGTTGATCCTC 400
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 575 CACGGAAACCCACCGGAGATCTCAGCCGGATCCGACGGTGGTCTGCAAACGTTGATCCTC 634
Query 401 ATGAATCCAACTACTTACGTTCAGTACACCcaacaagacaacgactcgaacaacaacaac 460
||||||||||||||||||||||| ||||| | ||||||||||||||
Sbjct 635 ATGAATCCAACTACTTACGTTCAATACACTCGACAAGACAACGACT-------------- 680
Query 461 aacagcaacaatagcaacaacaacaacacaaacacaaacacaaacaacaacaacaGTAGT 520
| | ||| | | |||||||||| | || ||| | ||||| | |||||||||||||||
Sbjct 681 --C-G-AAC-A-A-CAACAACAAC-A-AC-AACTCGAACAC--A-AACAACAACAGTAGT 727
Query 521 TTCGTTTTCCTCGATTCCCACGCGCCGCAGCCAAACGCGAGCCAGCAGTTCGTCGGAATA 580
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 728 TTCGTTTTCCTCGATTCCCACGCGCCGCAGCCTAACGCGAGCCAGCAGTTCGTCGGAATA 787
Query 581 CCACTCTCAGGTCACGAAGCTGCTTCCATTACAGCCGCCGACAACATCTCCGTACTTCAC 640
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 788 CCACTCTCCGGTCACGAAGCCGCTTCCATTACAGCCGCCGACAACATCTCCGTACTTCAC 847
Query 641 GGTTATCCTCCGCGCGTGCAGTACAGTCTCTACGGTAGCCACCAAGTGGATCCCACTCAC 700
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 GGATACCCTCCGCGCGTGCAGTACAGTCTCTACGGTAGCCACCAAGTGGATCCCACTCAC 907
Query 701 CAGCAAGCCGCGTGTGAGACGCCACGCGCGCAGCAAGGCCTCTCTTTAACCCTCTCGTCT 760
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 908 CAGCAAGCCGCGTGTGAGACGCCACGCGCGCAACAAGGCCTCTCTTTAACTCTCTCGTCA 967
Query 761 CAACAGCAGCAGCAACAGCAACATCATCAACAACACCAGCCTATTCACGTCGGATTCGGG 820
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 968 CAACAGCAGCAGCAACAGCAACATCATCAACAACACCAGCCTATCCACGTCGGGTTCGGG 1027
Query 821 TCCGGA-CATGGAGAAGATATCCGGGTCGGGTCTGGCTCTACAGGATCGGGGGTAACAAA 879
|||||| || ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1028 TCCGGACCA-GGAGAAGATATCCGGGTTGGGTCTGGTTCTACAGGATCGGGGGTAACAAA 1086
Query 880 CGGTATAGCTAATCTTGTTAGCTCCAAGTACTTGAAGGCAGCACAAGAGCTTCTTGACGA 939
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CGGTATAGCGAATCTTGTAAGCTCCAAGTACTTGAAGGCAGCACAAGAGCTTCTTGACGA 1146
Query 940 AGTAGTCAACGCTGATTCCGATGACATGAACGCTAAATCCCAACTATTCTCATCGAAAAA 999
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1147 AGTAGTCAACGCTGATTCCGATGACATGAACGCTAAATCCCAACTATTCTTATCGAAAAA 1206
Query 1000 GGGTAGTTGCGGAAATGATAAACCTGTCGGAGAATCATCGGCCGGCGCTGGAGGAGAAGG 1059
||| ||| ||||||| ||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1207 GGGGAGTAGCGGAAACGATAAGGCTGTCGGAGAATCCTCCGCCGGCGCTGGAGGAGAAGG 1266
Query 1060 TTCCGGTGGCGGAGCAGAAGCAGCCGGGAAACGTCCGGTGGAGCTAGGCACGGCAGAGAG 1119
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1267 TTCCGGTGGCGGAGGAGAAGCAGCTGGGAAACGTACGGTGGAGCTAGGCACGGCAGAGAG 1326
Query 1120 ACAAGAAATACAGATGAAGAAAGCAAAACTTAGTAACATGCTTCATGAGGTGGAGCAGAG 1179
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1327 ACAAGAAATACAGATGAAGAAAGCAAAGCTGAGTAACATGCTTCATGAGGTGGAGCAGAG 1386
Query 1180 ATATAGACAGTACCACCAGCAGATGCAGATGGTGATCTCTTCGTTCGAGCAAGCGGCAGG 1239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1387 ATATAGACAGTACCACCAGCAGATGCAGATGGTGATCTCGTCGTTCGAGCAAGCGGCAGG 1446
Query 1240 GATAGGATCAGCGAAGTCATACACGTCGCTAGCATTGAAAACCATATCAAGACAGTTCCG 1299
|||||| |||||||| ||||||||||| || ||| |||| ||||||||||||||||||||
Sbjct 1447 GATAGGGTCAGCGAAATCATACACGTCACTTGCACTGAAGACCATATCAAGACAGTTCCG 1506
Query 1300 TTGCTTGAAAGAGGCGATCGCTGGTCAGATAAAAGCGGCCAACAAGAGTCTTGGGGAGGA 1359
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1507 GTGCTTGAAAGAGGCCATCGCGGGTCAGATAAAAGCGGCCAACAAGAGTCTTGGGGAGGA 1566
Query 1360 AGATTCAGTGTCTGGTGTTGGGAGGTTTGAGGGGTCGAGGCTCAAGTTCGTGGACCACCA 1419
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1567 AGATTCGGTGTCTGGTGTTGGAAGGTTTGAGGGGTCGAGGCTCAAGTTCGTGGACCATCA 1626
Query 1420 CTTGAGACAGCAAAGAGCTCTTCAACAACTGGGAATGATTCAACATCCTTCCAATAATGC 1479
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1627 CTTGAGACAGCAAAGAGCTCTTCAGCAGCTGGGAATGATTCAACATCCTTCCAATAATGC 1686
Query 1480 TTGGAGACCTCAACGTGGTCTCCCAGAACGAGCCGTCTCAGTTCTCCGTGCTTGGCTCTT 1539
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1687 TTGGAGACCTCAACGTGGTCTCCCCGAACGAGCCGTCTCAGTCCTCCGTGCTTGGCTCTT 1746
Query 1540 CGAACACTTTCTTCATCCATACCCTAAGGATTCGGACAAGCACATGCTAGCTAAGCAAAC 1599
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1747 CGAACACTTTCTTCACCCATACCCTAAGGATTCGGACAAGCACATGCTAGCCAAGCAAAC 1806
Query 1600 AGGACTCACTCGTAGCCAGGTGTCGAACTGGTTTATAAACGCGAGAGTTCGGTTATGGAA 1659
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1807 AGGACTCACTCGGAGCCAGGTGTCGAACTGGTTCATAAACGCTAGAGTTCGGTTATGGAA 1866
Query 1660 ACCAATGGTGGAGGAGATGTACATGGAGGAAATGAAGGAGCAGGCAAAGAACATGGGATC 1719
|||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1867 ACCAATGGTGGAAGAGATGTACATGGAGGAAATGAAGGAGCAGGGAAAAAACATGGGATC 1926
Query 1720 CATGGAAAAGACTCCTTTGGATCAAAGCAACGAAGATTCTGCTTCAAAGTCAACAAGTAA 1779
|||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1927 CATGGAGAAGACTCCTCTGGATCAAAGCAACGAAGATTCTGCTTCTAAGTCAACAAGTAA 1986
Query 1780 CCAAGAAAAGAG-CCCAATGGCGGACACTAATTACCATATGAATCCCAATCACAACGGTG 1838
|||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1987 CCAAGAGAAGAGTCCC-ATGGCCGACACTAATTACCATATGAATCCCAATCACAACGGTG 2045
Query 1839 ACCTAGAAGGCGTCACTGGAATGCAAGGAAGCCCCAAGAGACTAAGAACCAGCGACGAGA 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2046 ACCTAGAAGGCGTCACTGGAATGCAAGGAAGCCCCAAGAGACTAAGAACCAGCGACGAGA 2105
Query 1899 CAATGATGCAGCCAATAAATGCGGATTTCAGCTCCAACGAGAAGCTCACGATGAAGATTC 1958
||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2106 CAACGATGCAGCCTATAAATGCGGATTTCAGTTCCAACGAGAAGCTCACGATGAAGATTC 2165
Query 1959 TAGAAGAACGGCAAGGGATAAGATCAGATGGTGGCTACCCTTTCATGGGTAATTTCGGGC 2018
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 2166 TAGAAGAACGGCAAGGGATAAGATCAGACGGTGGCTACCCTTTCATGGGGAATTTCGGGC 2225
Query 2019 AATACCAAATGGATGAGATGTCAAGATTTGATGTAGTCTCAGACCAGGAGCTCATGGCGC 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2226 AATACCAAATGGATGAGATGTCAAGATTTGATGTAGTCTCAGACCAGGAGCTCATGGCGC 2285
Query 2079 AAAGGTACTCAGGAAACAACAATGGCGTGTCCCTCACGTTAGGTTTACCTCATTGTGATA 2138
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 2286 AAAGGTACTCAGGAAACAACAATGGCGTGTCCCTCACGTTAGGTTTACCCCACTGTGATA 2345
Query 2139 GCTTGTCGTCCACGCACCATCAGGGTTTCATGCAGACCCACCATGGGATTCCTATAGGGA 2198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2346 GCTTGTCGTCCACGCACCATCAGGGTTTCATGCAGACCCACCATGGGATTCCTATAGGGA 2405
Query 2199 GAAGAGTGAAAATAGGAGAAACAGAGGAATATGGACCCGCCACCATCAATGGTGGTAGCT 2258
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2406 GAAGAGTGAAAATAGGAGAAACAGAGGAATATGGAGCCGCCACCATCAATGGTGGTAGCT 2465
Query 2259 CGA-CCACAACCGCACATTCATCAGCGGCAGCTGCCGCGGCTTACAATGGGATGAACATA 2317
| | |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2466 C-AGCCACAACCGCGCATTCATCAGCCGCAGCTGCCGCGGCTTACAATGGGATGAACATA 2524
Query 2318 CAGAACCAGAAGAGATATGTGGCTCAGTTATTGCCCGACTTCGTTGCATAAACCCATCTC 2377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2525 CAGAACCAGAAGAGATATGTGGCTCAGTTATTGCCCGACTTCGTTGCATAAACCCATCTC 2584
Query 2378 TCTAGAAGGAGAAACCGAAACAGGTTATTATATACGTTTCTAGTTTTTAATTAGTATATA 2437
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2585 TCTAGAAGGAGAAACCGAAACAGGTTATTATA--CGTTTCTAGTTTTTAATTAGTATATA 2642
Query 2438 GTTTCTCATACCATTGAACCAAAACAAAGAACAAAATTTAATTTTAGTCTTTGGTTATAT 2497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2643 GTTTCTCATACCATTGAACCAAAACAAAGAACAAAATTTAATTTTAGTCTTTGGTTAAAT 2702
Query 2498 ATGGCCGACGGTTGTATATCGATTTTGTAAttttttttttt--CGTTTCTATTGGGGGAT 2555
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 2703 ATGGCCGACGGTTGTATATCGATTTTGTAATTTTTTTTTTTTTCGTTTTTATTGGGGGAT 2762
Query 2556 GGATAGGGTTATATATGTATATGGATTAGTTACGTGTAATAGCTTGCATTGGGTGTATAC 2615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2763 GGATAGGGTTATATATGTATATGGATTAGTTACGTGTAATAGCTTGCATTGGGTGTATAC 2822
Query 2616 CAAAATATATTTTTA-CTTTTATTACAATGTAATAATTAATAAGATAGTGAACTGATCTA 2674
|||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||
Sbjct 2823 CAAAATATTTTTTTTGCTTTTATTACAATGTAATAAT-AA---GATAGTGAACTGATCTA 2878
Query 2675 TCAAATATGGAATGATGATTACAGATTAGATC 2706
|||||||||||||| |||||||||||| ||||
Sbjct 2879 TCAAATATGGAATGGTGATTACAGATTGGATC 2910
Score = 315 bits (170), Expect = 1e-84
Identities = 174/176 (99%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 63 attatttctcagctttttaaatgtattttatatttCCCCTTTGAGCAAGAAAAGAGTTGC 122
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTATTTCTCAGCTTTTTTAATGTATTTTATATTTCCCCTTTGAGCAAGAAAAGAGTTGC 60
Query 123 AGAGATCTTTGAGTCTGACACAGAGACCAAACTCACATAGCAATCACACACATCTCCACA 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGATCTTTGAGTCTGACACAGAGACCAAACTCACATAGCAATCACACACATCTCCACA 120
Query 183 AACACAGCTTGAGATGATCATGAAACACGTGCATCCTCAGATCTCTATCAATCCAG 238
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 AACACAGCTTGAGATGATCATGAAACACGTGCATCATCAGATCTCTATCAATCCAG 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102081856600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5