BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35950.1
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345328 jgi|Araly1|345328|fgenesh1_pg.C_scaffold_4001670 893 0.0
> Ahg345328 jgi|Araly1|345328|fgenesh1_pg.C_scaffold_4001670
Length=630
Score = 893 bits (483), Expect = 0.0
Identities = 577/622 (93%), Gaps = 8/622 (1%)
Strand=Plus/Plus
Query 117 GTT-TCGTTCTCGTTCTCATCTGTTCCTCAACGAGTTCGAAACGTCTGCCGGAAGATTCA 175
||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 11 GTTCTCGTTCTCGTTCTCATCTGTTCCTCAACGAGTTCGAAACGTCTGTCGGAGGATTCT 70
Query 176 ACT-TGCTCAGCCGTAACCACCGTGATCATCTGTACGTTTCCGACGTTGTGGATACACTC 234
||| | ||| |||||||||||||||| |||| |||||||||||||| |||||| ||||||
Sbjct 71 ACTCT-CTCCGCCGTAACCACCGTGACCATCCGTACGTTTCCGACGCTGTGGACACACTC 129
Query 235 TCTGAACAGTTCTCTTCGATGTCTCTTCTCCATCCTAAACCCAGACTGGTTCCTACTTTG 294
||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||| ||||
Sbjct 130 TCTGATCAGTTCTCTTCCATGTCTCTTCTCCGTCCTAAACCCAGACCGATTCCTGCTTTA 189
Query 295 CCTTCGAGTCTCCAGTCTTCTTTAAGGCCTAATGGTGTTAAAGCTTATCAGAGATTGTAC 354
|||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 190 TCTTCGAGTCTTCAGTCTTCTTTAAGGCTTAATGGTGTTAAAGCTGATCAGAGATTGTAC 249
Query 355 CGAGAAAGGCTCAAGCTTGAACCTTTTTATGAACTTCATCTTTCAAGGATCCGC--AAA- 411
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 250 CGAGAAAGGCTCAAGCTTGAACCGTTTTATGAACTTCATCTTTCAAGGATCCGCAAAAAC 309
Query 412 GAGTCACAGCAAGATAGAGCTAAGGTTTTACAGAGACAAGAGGCACGGCTACAGAAGAGA 471
|||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 310 GAGTCACAACAAGACAGAGCTAAGGTTTTACAGAGACAAGAGGCACGGCTAAACAAGAGA 369
Query 472 GGTTTGGTTCACCGAAACGGTAACGTTTTGAAGGAATCTGTAGGAACCGGCGTTTTTCAC 531
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 370 GGTTTGGCTCATCGAAACGGTAACGTTTTGAAGGAATCTGTAGGAACCGGCGTTTTCCAC 429
Query 532 CCTCTTCAGCGTCCAACTTTCAAGACTTTTGACCCTGTGAAGAAGCATAATCAAAGGAAT 591
|||||||||||||||||||| ||||||| |||| |||||||||| |||||||||||||||
Sbjct 430 CCTCTTCAGCGTCCAACTTTTAAGACTTGTGACTCTGTGAAGAAACATAATCAAAGGAAT 489
Query 592 CGGAATCAAAGTGAGAAGGAGTT-TATGACCAAAGAAAAAAGAGGAGTGATGACTTCTAC 650
||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| ||||
Sbjct 490 CGGAATCAACGTGAGAAGGAGTTGT-TGACCAAAGAAAAAAGAGGAGTAATGACTACTAC 548
Query 651 AACGCAGGAGCAGCAACAGAAAGAGGAGTGTCATTATCATTTGCCTTCAGACATGGATTT 710
|||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 549 AACGCATGAGCAGCAACAGAAGGAAGAGTGTCATTATCATTTGCCTTCAGACATGGATTT 608
Query 711 CTCCAAGGACTGGACTTTCTGA 732
||||||||||||||||||||||
Sbjct 609 CTCCAAGGACTGGACTTTCTGA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35911787814
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5