BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G35950.1 Length=967 Score E Sequences producing significant alignments: (Bits) Value Ahg345328 jgi|Araly1|345328|fgenesh1_pg.C_scaffold_4001670 893 0.0 > Ahg345328 jgi|Araly1|345328|fgenesh1_pg.C_scaffold_4001670 Length=630 Score = 893 bits (483), Expect = 0.0 Identities = 577/622 (93%), Gaps = 8/622 (1%) Strand=Plus/Plus Query 117 GTT-TCGTTCTCGTTCTCATCTGTTCCTCAACGAGTTCGAAACGTCTGCCGGAAGATTCA 175 ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| Sbjct 11 GTTCTCGTTCTCGTTCTCATCTGTTCCTCAACGAGTTCGAAACGTCTGTCGGAGGATTCT 70 Query 176 ACT-TGCTCAGCCGTAACCACCGTGATCATCTGTACGTTTCCGACGTTGTGGATACACTC 234 ||| | ||| |||||||||||||||| |||| |||||||||||||| |||||| |||||| Sbjct 71 ACTCT-CTCCGCCGTAACCACCGTGACCATCCGTACGTTTCCGACGCTGTGGACACACTC 129 Query 235 TCTGAACAGTTCTCTTCGATGTCTCTTCTCCATCCTAAACCCAGACTGGTTCCTACTTTG 294 ||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||| |||| Sbjct 130 TCTGATCAGTTCTCTTCCATGTCTCTTCTCCGTCCTAAACCCAGACCGATTCCTGCTTTA 189 Query 295 CCTTCGAGTCTCCAGTCTTCTTTAAGGCCTAATGGTGTTAAAGCTTATCAGAGATTGTAC 354 |||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 190 TCTTCGAGTCTTCAGTCTTCTTTAAGGCTTAATGGTGTTAAAGCTGATCAGAGATTGTAC 249 Query 355 CGAGAAAGGCTCAAGCTTGAACCTTTTTATGAACTTCATCTTTCAAGGATCCGC--AAA- 411 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 250 CGAGAAAGGCTCAAGCTTGAACCGTTTTATGAACTTCATCTTTCAAGGATCCGCAAAAAC 309 Query 412 GAGTCACAGCAAGATAGAGCTAAGGTTTTACAGAGACAAGAGGCACGGCTACAGAAGAGA 471 |||||||| ||||| |||||||||||||||||||||||||||||||||||| | |||||| Sbjct 310 GAGTCACAACAAGACAGAGCTAAGGTTTTACAGAGACAAGAGGCACGGCTAAACAAGAGA 369 Query 472 GGTTTGGTTCACCGAAACGGTAACGTTTTGAAGGAATCTGTAGGAACCGGCGTTTTTCAC 531 ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 370 GGTTTGGCTCATCGAAACGGTAACGTTTTGAAGGAATCTGTAGGAACCGGCGTTTTCCAC 429 Query 532 CCTCTTCAGCGTCCAACTTTCAAGACTTTTGACCCTGTGAAGAAGCATAATCAAAGGAAT 591 |||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||| Sbjct 430 CCTCTTCAGCGTCCAACTTTTAAGACTTGTGACTCTGTGAAGAAACATAATCAAAGGAAT 489 Query 592 CGGAATCAAAGTGAGAAGGAGTT-TATGACCAAAGAAAAAAGAGGAGTGATGACTTCTAC 650 ||||||||| ||||||||||||| | |||||||||||||||||||||| |||||| |||| Sbjct 490 CGGAATCAACGTGAGAAGGAGTTGT-TGACCAAAGAAAAAAGAGGAGTAATGACTACTAC 548 Query 651 AACGCAGGAGCAGCAACAGAAAGAGGAGTGTCATTATCATTTGCCTTCAGACATGGATTT 710 |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 549 AACGCATGAGCAGCAACAGAAGGAAGAGTGTCATTATCATTTGCCTTCAGACATGGATTT 608 Query 711 CTCCAAGGACTGGACTTTCTGA 732 |||||||||||||||||||||| Sbjct 609 CTCCAAGGACTGGACTTTCTGA 630 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35911787814 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5