BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35980.1
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482568 jgi|Araly1|482568|fgenesh2_kg.4__1628__AT2G35980.1 1286 0.0
> Ahg482568 jgi|Araly1|482568|fgenesh2_kg.4__1628__AT2G35980.1
Length=881
Score = 1286 bits (696), Expect = 0.0
Identities = 825/887 (93%), Gaps = 9/887 (1%)
Strand=Plus/Plus
Query 1 GCCATATATCCATTCATTCCAATATAATTCTCCACAAAATTACTATCATGGCTGCTGAAC 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GCCATATATCCATTCATTCC-----AATTCTCCACAAAATTACTATCATGGCTGCTGAAC 55
Query 61 AACCTCTCAATGGCGCCTTCTACGGTCCATCAGTCCCACCACCAGCTCCCAAAGGCTACT 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 56 AACCTCTCAATGGCGCCTTCTACGGTCCATCAGTCCCACCACCGGCTCCCAAAGGCTACT 115
Query 121 ACCGACGTGGGCACGGTCGTGGCTGTGGCTGCTGCCTCCTCAGCTTATTCGTCAAAGTAA 180
||||||||||||||||||| ||||||||||| |||||||| ||||||||||| ||||| |
Sbjct 116 ACCGACGTGGGCACGGTCGCGGCTGTGGCTGTTGCCTCCTTAGCTTATTCGTTAAAGTCA 175
Query 181 TCATATCCCTTATTGTCATCCTCGGCGTAGCCGCTCTCATCTTCTGGCTCATCGTCCGAC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 176 TCATATCCCTTATTGTCATCCTCGGCGTAGCCGCTCTCATCTTCTGGCTCATCGTCCGTC 235
Query 241 CTCGTGCCATCAAGTTTCACGTGACCGATGCGTCCCTTACCCGCTTTGACCACACTTCCC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTCGTGCCATCAAGTTCCACGTGACCGATGCGTCCCTTACCCGCTTTGACCACACTTCCC 295
Query 301 CGGACAACATTTTAAGGTATAACCTAGCCCTCACTGTTCCTGTCCGTAACCCAAACAAGA 360
| |||||||||||||||||||||||||| |||||||| ||||| ||||| || |||||||
Sbjct 296 CCGACAACATTTTAAGGTATAACCTAGCACTCACTGTCCCTGTACGTAATCCTAACAAGA 355
Query 361 GGATCGGACTCTACTACGATAGGATCGAAGCTCATGCCTACTACGAGGGAAAGCGGTTTA 420
|||||||| |||||||||| || |||||||||||||| |||||||||||||| ||||||
Sbjct 356 GGATCGGAGTCTACTACGACAGAATCGAAGCTCATGCTTACTACGAGGGAAAAAGGTTTA 415
Query 421 GTACCATCACGTTAACTCCTTTCTATCAAGGACACAAAAACACAACCGTTCTCACACCAA 480
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 GTTCCATCTCGTTAACTCCTTTCTATCAAGGACACAAAAACACAACCGTTCTCACACCAA 475
Query 481 CGTTCCAAGGCCAAAACCTTGTTATTTTTAACGCCGGACAGTCTAGGACTTTAAACGCGG 540
||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||| |
Sbjct 476 CGTTCCAAGGCCAAAACCTTGTTATATTTAACGCCGGACAGTCTCGGACTTTGAACGCTG 535
Query 541 AGAGGATATCCGGTGTATACAATATAGAGATCAAGTTCAGGCTTAGGGTTAGGTTTAAGC 600
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGAGGATCTCCGGTGTGTACAATATAGAGATCAAGTTCAGGCTTAGGGTTAGGTTTAAGC 595
Query 601 TTGGGGACTTGAAGTTTAGGAGGATTAAGCCTAAGGTTGATTGCGATGATCTAAGGCTTC 660
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 596 TTGGGGACTTGAAGTTTAGGAGAATTAAGCCTAAGGTTAATTGCGATGATCTAAGGCTTC 655
Query 661 CTTTAAGTACCTCAAACGGAACTACAACTACCTCCACTGTTTTCCCGATCAAGTGCGACT 720
||||||||||||| |||||||||||||| || || || |||||||| |||||||||||||
Sbjct 656 CTTTAAGTACCTCCAACGGAACTACAACCACTTCTACCGTTTTCCCTATCAAGTGCGACT 715
Query 721 TCGACTTCTGAGTCTTAGAATTTTATCCTGTCCCATTCCATCATATATTGGTTCGTTTAT 780
|||| || ||||||||||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 716 TCGATTTTTGAGTCTTAGAATTTTATCCTCCCCCATTCCATCATGTATTGGTTCGTTCAT 775
Query 781 TTT-AGTTTTGTTTTCTAATTGCATCCCTA--CGACTTATCTTCTAAAGAGCCTATTGGA 837
||| | |||| |||||||||||| | ||| |||||||| ||||| | ||||||||| |
Sbjct 776 TTTTA-TTTTATTTTCTAATTGCGGCACTATACGACTTATTTTCTATATAGCCTATTGTA 834
Query 838 TACATTTGTCCATATATATAAATAAAACAGTCTTTTATGTAATTGAT 884
|||||||| ||| || |||||||||||||||||||||||||||||||
Sbjct 835 TACATTTGCCCACATTTATAAATAAAACAGTCTTTTATGTAATTGAT 881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32747585703
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5