BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G35990.1
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
Ahg482570 jgi|Araly1|482570|fgenesh2_kg.4__1630__AT2G35990.1 1413 0.0
Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1 204 1e-51
Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226 91.6 9e-18
> Ahg482570 jgi|Araly1|482570|fgenesh2_kg.4__1630__AT2G35990.1
Length=866
Score = 1413 bits (765), Expect = 0.0
Identities = 837/870 (96%), Gaps = 11/870 (1%)
Strand=Plus/Plus
Query 20 CTTCCCATATCTATCTATATATaaataaaaagttgagaaagtgacagaaccaaaaaagaa 79
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTCACATATCTATCTATATATAAATAAAAAGTTGAGAAAGTGACAGAACCAAAAAAGAA 60
Query 80 agaaaagaaggaaaaagacagaaagagagagagataatggaagagacaaaatcaagaTTC 139
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 61 AGAAAAGAAGGAAAAAGACAG-AA-AGAGAGAGATAATGGAAGAGACAAAATCAAGATTC 118
Query 140 AGGAGGATCTGTGTCTTCTGCGGAAGCAGTTCCGGCAACAAAACCACTTATCACGACGCT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGGAGGATCTGTGTCTTCTGCGGAAGCAGTTCCGGCAACAAAACCACTTATCACGACGCT 178
Query 200 GCTCTCCAACTCGCCCACCAACTGGTGGAGAGAAACATCGATTTGGTGTATGGAGGAGGA 259
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 179 GCTCTCCAACTCGCTCACCAACTGGTGGAAAGAAACATCGATTTGGTGTATGGAGGGGGA 238
Query 260 AGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGTTCATGATGGTGGTCGTCATGTTCTT 319
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 239 AGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGTTCATAATGGTGGTCGTCATGTTCTT 298
Query 320 GGGATCATTCCGAAGTCTCTAGCACCAAGAGAGATAACCGGTGAATCAATAGGAGAAGTT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GGGATCATTCCGAAGTCTCTAGCACCAAGAGAGATAACCGGTGAATCAATAGGAGAAGTT 358
Query 380 ATAACAGTATCGACTATGCACCAAAGGAAGGCTGAAATGGGTCGCCAAGCGGATGCCTTC 439
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 359 ATAACAGTATCGACTATGCACCAAAGGAAGGCTGAAATGGTTCGCCAAGCGGATGCCTTC 418
Query 440 ATCGCACTTCCTGGTGGATATGGGACATTTGAAGAGTTGTTGGAAGTCATCACCTGGTCT 499
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 419 ATTGCACTTCCTGGTGGATATGGGACATTTGAAGAGTTGTTGGAAGTCATCACTTGGTCT 478
Query 500 CAGCTTGGGATTCACACTAAACCGGTGGGACTATTGAACGTGGATGGATTCTACGATTCA 559
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAACTTGGGATCCACACTAAACCGGTGGGACTATTGAACGTGGATGGATTCTACGATTCA 538
Query 560 CTATTGACGTTTATAGATAAGGCAGTGGACGAAGGCTTCGTCTCCTCCACCGCTCGCCGT 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTATTGACGTTTATAGATAAGGCAGTGGACGAAGGCTTCGTCTCCTCCACCGCTCGCCGT 598
Query 620 ATCATTGTCTCGGCTCCAAACGCTCCTCAATTACTTCAACTTCTTGAGGAGTATGTTCCA 679
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATCATCGTCTCTGCTCCAAACGCTCCTCAATTACTTCAACTTCTTGAGGAGTATGTTCCA 658
Query 680 AAACACGACGATTTTGTATCCAAAATGGTGTGGGACAATACCACGGATGCTTTCACTTTG 739
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 659 AAACACGACGATTTTGTATCCAAAATGGTGTGGGACGATACTACGGATGCTTTCACTTTG 718
Query 740 GAAGGCGACTCGTTTTAG--ATAT-AGTTCATTTGTATCTTAGTCTACttttattttatt 796
||||||||||| |||||| |||| |||||||| ||||||||||||||||||||| ||||
Sbjct 719 GAAGGCGACTCATTTTAGCTATATTAGTTCATTCGTATCTTAGTCTACTTTTATTGTATT 778
Query 797 atta-a-aaatctcgttttttattggccatt-t-caaatttttgatttttGTATACCATG 852
||| | ||| ||||||| |||||||||||| | |||| ||||||||||||||| |||||
Sbjct 779 -TTATAGAAA-CTCGTTTCTTATTGGCCATTATTCAAAATTTTGATTTTTGTATCCCATG 836
Query 853 TATTGAGCTTATATAACAATGGAACTTGCC 882
||||||||||||| ||||||||| ||||||
Sbjct 837 TATTGAGCTTATACAACAATGGAGCTTGCC 866
> Ahg482713 jgi|Araly1|482713|fgenesh2_kg.4__1773__AT2G37210.1
Length=1006
Score = 204 bits (110), Expect = 1e-51
Identities = 334/440 (76%), Gaps = 23/440 (5%)
Strand=Plus/Plus
Query 126 caaaa-tc-aagaTTCAGGAGGATCTGTGTCTTCTGCGGAAGCAGTTC-CGGCAACAAAA 182
||||| || ||| ||||| || |||||||||||||| ||| |||| || ||||| || |
Sbjct 119 CAAAAGTCAAAG-TTCAGAAGAATCTGTGTCTTCTGTGGAGGCAG-TCAAGGCAAGAAGA 176
Query 183 CCACTTATCACGACGCTGCTCTCCAACTCGCCCACCAACTGG-TGGAGAGAAACATCGAT 241
| ||| || || |||||| | | |||| | || |||||| | | || || || |||
Sbjct 177 GTAGTTACCAAGATGCTGCTGTTGATCTCGGCAACGAACTGGTTTCA-AGGAATATTGAT 235
Query 242 TTGGTGTATGGAGGAGGAAGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGTTCATGAT 301
| || |||||||| || ||| | || | |||||| | |||| |||||||||||||||
Sbjct 236 CTAGTCTATGGAGGTGGGAGCATAGGATTGATGGGTTTGGTTTCACAAGCTGTTCATGAT 295
Query 302 GGTGGTCGTCATGTTCTTGGGATCATTCCGAAGTCTCT-A-GCACCAAGAGAGATAACCG 359
||||||||||||||| |||| |||||||| ||| | || | || | | ||||| | || |
Sbjct 296 GGTGGTCGTCATGTTATTGGAATCATTCCCAAGACCCTCATGC-CTA-GAGAGTTGACTG 353
Query 360 GTGAATCAATAGGAGAAGTTATAACAGTAT-C-GACTATGCACCAAAGGAAGGCTGAAAT 417
||||| || |||||||||| | | |||| | | || ||||||||||||||| ||||| ||
Sbjct 354 GTGAAACAGTAGGAGAAGTAAGAGCAGT-TGCAGA-TATGCACCAAAGGAAAGCTGAGAT 411
Query 418 GGGTC-GCCAAGCGGATGCCTTCATCGCACTT-CCTGGTGGATATGGGACATTTGAAGAG 475
|| | || | | ||||| || || || ||| || ||||| ||||| ||| |||||||
Sbjct 412 GGCTAAGC-ACTCTGATGCTTTTATTGC-CTTACCAGGTGGTTATGGAACACTTGAAGAA 469
Query 476 TTG-TTGGAAGTCATCACCTGGTCTCAGCTTGGGATTCAC-ACTAAACCGGTGGGACTAT 533
||| ||| ||||||| || ||| |||||||||| || || || || |||||||| |
Sbjct 470 TTGCTTG-AAGTCATAACTTGGGCTCAGCTTGGTATACATGAC-AAGCCGGTGGGTTTGC 527
Query 534 TGAACGTGGATGGATTCTAC 553
| || || ||||||| ||||
Sbjct 528 TCAATGTTGATGGATACTAC 547
> Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226
Length=624
Score = 91.6 bits (49), Expect = 9e-18
Identities = 168/225 (75%), Gaps = 10/225 (4%)
Strand=Plus/Plus
Query 119 gaagagacaaa-atcaagaTTCAGGAGGATCTGTGTCTTCTGCGGAAGCAGTTCCGGCAA 177
||||| ||||| ||||| || | ||| || || ||||| || || || || |||||
Sbjct 6 GAAGAAACAAAGTTCAAGGTTTAAGAGCATTTGCGTCTTTTGTGGGAGTAGCAATGGCAA 65
Query 178 CAAAACCACTTATCACGACGCTGCTC-TCCAACTCGCCCACCAACTGGTGGA-GAGAAAC 235
|||| | | |||||| || || || | | | | ||| | || |||| || ||| ||
Sbjct 66 CAAAGCTAGTTATCAAGATGCAGC-CATTGATTTGGCCAAAGAATTGGT-GATGAGGAAG 123
Query 236 ATCGAT-TTGGTGTATGGAGGAGGAAGCGTGGGGCTAATGGGTCTCATTTCTCAAGCTGT 294
|| ||| || || ||||| ||||||||| | || |||||||| | | |||||||||||
Sbjct 124 ATTGATCTT-GTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCTGT 182
Query 295 TCATGATGGTGGTCGTCATGTTCTTGG-GATCATTCCGAAGTCTC 338
|||||||||||||||||||||| |||| | |||| || ||| |||
Sbjct 183 TCATGATGGTGGTCGTCATGTTATTGGAG-TCATCCCAAAG-CTC 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32823831537
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5