BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G36000.1
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497554 jgi|Araly1|497554|fgenesh2_kg.970__2__AT2G36000.1 1993 0.0
Ahg482571 jgi|Araly1|482571|fgenesh2_kg.4__1631__AT2G36000.1 1940 0.0
> Ahg497554 jgi|Araly1|497554|fgenesh2_kg.970__2__AT2G36000.1
Length=1350
Score = 1993 bits (1079), Expect = 0.0
Identities = 1282/1374 (93%), Gaps = 38/1374 (3%)
Strand=Plus/Plus
Query 86 ATGTGAGATGTCTCTTGAACAATGCAACAAGAAGctctctctttcctctcgtcctctctc 145
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1 ATGTGAGATGTCTCTTGAACAATGCAACAAGAAGCTCTCTCTTTCCTCTCTTCCTCTTTC 60
Query 146 ccttcccttcaccacaattttccctctctttctcgcctccGCTTCAACAATTTTCCCGCA 205
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||
Sbjct 61 CCTTCCCTTCACCACAATTTTCCCACACTTTCTCGCCTCCGCTTCCACAATTTTCCCGCA 120
Query 206 CTTTCCTTCAAACCAAACACTTCATCATCATCTTCATCATTCTTCAAATCCCCAGATATA 265
|||||||||||||||||||| | || | ||||||||| |||||||||||||| ||||
Sbjct 121 CTTTCCTTCAAACCAAACAC-T--TC-T--TCTTCATCACTCTTCAAATCCCCAAATAT- 173
Query 266 CCCTCTCTCTCCTCCACCacaacaacaacaacaacCACCGAAACCCTAGAATCCTCAATC 325
||| |||||| |||| | | || | ||| |||||||||||||||||||||||||||||
Sbjct 174 CCC-CTCTCT-CTCC-TC-C-AC--C-ACAGCAACCACCGAAACCCTAGAATCCTCAATC 225
Query 326 CACGAGAAACTCATTTACCTCGATTCACTCGGAATCGATTTCCTAACCCTAATCAACCGT 385
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 226 CACGAGAAACTCATTTACCTCGATTCACTCGGAATCGATTTCTTAACCCTAATCAACCGT 285
Query 386 CATCCACCTCTCCTCTCCACCGCTCTCTCCGCCGTTGAATCAGTCGTCGATTACATGACC 445
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 286 CATCCTCCTCTCCTCTCCACCGCTCTCTCCGCCGTTGAATCCGTCGTCGATTACATGACC 345
Query 446 ACTCCACCAATAAACTTCACTTTACAAGACTTTCGCCGCCTCGTCTCAATGTGTCCAGAG 505
||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |||
Sbjct 346 ACTCCACCAATCAACTTCACCTTACAAGATTTTCGCCGCCTCGTCTCCATGTGTCCCGAG 405
Query 506 CTTCTCACTTCACCTTTAACCTCACACACAATCCCAGTCATCACTTTCCTCCTCCGTGAA 565
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 CTTCTCACTTCACCGTTAACCTCACACACAATCCCAGTCATCACTTTCCTCCTCCGTGAA 465
Query 566 GTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGCTTTACGACGTCGTCCTCGTCTTCTC 625
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 GTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGCTTTACGTCGTCGTCCTCGTCTTCTC 525
Query 626 GCTTGTAGCGTCGATCACCAGCTTAGACCAACGCTTTACTTTCTCCAGAGAATCGGAATC 685
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 526 GCTTGTAGCGTCGATCACCAGCTTCGACCAACGCTTTACTTTCTCCAGAGAATCGGAATC 585
Query 686 TTAGATCCGCATAAACATACGTATCTTCTCTCTTGTAGCGTTG-ACAATAAACTCGTACC 744
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 586 TTAGATCCGCATAAACATACGTATCTTCTCTCTTGTAGCGTTGAAC-ATAAACTCGTACC 644
Query 745 ACGGATTGATTACTTCGAGAAGTTAGGATTCTCGCGGCGGAGCGCCACCGCGATGTTTAA 804
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ACGGATTGATTTCTTTGAGAAGTTAGGATTCTCGCGGCGGAGCGCCACCGCGATGTTTAA 704
Query 805 GAGATTCCCGCAGCTGTTTAATTACAGTATTGCTGAGAATTATGAGCCGAAGTTGAAGTA 864
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 705 GAGATTCCCGCAGCTGTTTAATTACAGTATTGCTGAGAATTATGAGCCAAAGTTGAAGTA 764
Query 865 TTTGATGGTGGAGATGGGGAGAGATGTTAGAGAGGTTCTTGAGTTTCCTCAGTATTTCTC 924
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 TTTGATGGTGGAGATGGAGAGAGATGTTAGAGAGGTTCTTGAGTTTCCTCAGTATTTTTC 824
Query 925 GTTTAGTTTGGAGAATCGGATTAAACCGAGACATGAAGCTTGTGCTGCGAAAGGTGTGAG 984
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 825 GTTTAGTTTGGAGAATCGGATTAAACCGAGACATGAAGCTTGTGCGGCGAAAGGTGTGAG 884
Query 985 GTTTCCATTGCCGGTGATGTTGAAGACTAATGAAGCTGGTTTTAGAGATACATTGGAGGT 1044
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 885 GTTTCCATTGCCGGTGATGTTGAAGACGAATGAAGCTGGTTTTAGAGATACATTGGAGGT 944
Query 1045 ATGTTGTGATTCTTCTCCGCCATTGAAGACCTCTCGCCTTGTTACTGTACAAAAAGATTC 1104
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 945 ATGTTGTGATTCTTCTCCGCCATTGAAGACATCTCGCCTTGTTACTGTACAAAA-GATTC 1003
Query 1105 TTGATTTATAGAGTTTTGTGTGCTAGGA----G-AACATGGAAGCAAGTACATTTTTGTA 1159
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1004 TTGATTTATAGAGTTTTGTGTGCTAGGAACTTGGAACATGGAAGCAAGTACATTTTTGTA 1063
Query 1160 ATGAATGATGATGAAG-AACTCAATGAATGAAGAAACCAGCCTCTGCCTACATTTTGAGA 1218
||||||||| || || ||||||| ||||||||||||| |||||||||||||||| ||||
Sbjct 1064 ATGAATGATTCTGGAGGAACTCAAAGAATGAAGAAACCGGCCTCTGCCTACATTTAGAGA 1123
Query 1219 CACACACAGG-GATGGTGAG-TTAAATCTT-GATAAGAGAAAGAATGTTCATTTACAATT 1275
| | || |||||||| || ||||| |||| |||||||| ||||||||||||||
Sbjct 1124 G-CG-AG-GGAGATGGTGAAATTGTATCTTTGATAGGAGAAAGAGTGTTCATTTACAAT- 1179
Query 1276 CACGA-TT-CCGATGTATTT-CGGTCTAGTTATTGTTAGTGAACGAGAAATCAAGTGTAT 1332
| || || || |||| ||| ||||||| |||| ||| |||| | || ||||||||||||
Sbjct 1180 -A-GAATTTCCAATGTTTTTTCGGTCTACTTATCGTT-GTGACCAAGCAATCAAGTGTAT 1236
Query 1333 GTAAGTCCAGAAACCGTGTAGAGTTGCGATTTGCAGAGAATTGTGA-TTCTACAATTGGA 1391
||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1237 GTAAGTCCAGAAACCTTGTAGAGTTGCGATTTGCAGAGAAGTGTGAATTCTACAATTGGA 1296
Query 1392 GGCAAGATGATGAATGTGTGAACTGATTAGCGTAACGGTTTAGTTATTGGTCTT 1445
|||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1297 GGCAGGATGATGAATGTGTAAACTGATTAGCGTAACGGTTTAGTGATTGGTCTT 1350
> Ahg482571 jgi|Araly1|482571|fgenesh2_kg.4__1631__AT2G36000.1
Length=1400
Score = 1940 bits (1050), Expect = 0.0
Identities = 1335/1459 (92%), Gaps = 73/1459 (5%)
Strand=Plus/Plus
Query 1 ATCACAACTCTGTTCCAAGTCTTATCCTTTCATCATCATCATCACTTACCTTCTTCACAG 60
||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1 ATCACAACTCTGTTCCAAGTCTTATCC--T--T--TCATCATCACTTACCTTCTTCAC-- 52
Query 61 AGAGAGAGCTTCATCATCATATGTAATGTGAGATGTCTCTTGAACAATGCAACAAGAAGc 120
| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 53 ACAGAGAG------------ATGTAATGTGAGATGTCTCTTGAACAATGCAACAAGAAGC 100
Query 121 tctctctttcctctcgtcctctctcccttcccttcaccacaattttccctctctttctcg 180
||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||
Sbjct 101 TCTCTCTTTCCTCTCTTCCTCTTTCCCTTCCCTTCACCACAATTTTCCCACACTTTCTCG 160
Query 181 cctccGCTTCAACAATTTTCCCGCACTTTCCTTCAAACCAAACACTTCATCATCATCTTC 240
|||||||||| |||||||||||||||||||||||||||||||||| | || | |||||
Sbjct 161 CCTCCGCTTCCACAATTTTCCCGCACTTTCCTTCAAACCAAACAC-T--TC-T--TCTTC 214
Query 241 ATCATTCTTCAAATCCCCAGATATACCCTCTCTCTCCTCCACCacaacaacaacaacaac 300
|||| |||||||||||||| |||| ||| |||||| |||| | | || | ||| ||||
Sbjct 215 ATCACTCTTCAAATCCCCAAATAT-CCC-CTCTCT-CTCC-TC-C-AC--C-ACAGCAAC 265
Query 301 CACCGAAACCCTAGAATCCTCAATCCACGAGAAACTCATTTACCTCGATTCACTCGGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 CACCGAAACCCTAGAATCCTCAATCCACGAGAAACTCATTTACCTCGATTCACTCGGAAT 325
Query 361 CGATTTCCTAACCCTAATCAACCGTCATCCACCTCTCCTCTCCACCGCTCTCTCCGCCGT 420
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 326 CGATTTCTTAACCCTAATCAACCGTCATCCTCCTCTCCTCTCCACCGCTCTCTCCGCCGT 385
Query 421 TGAATCAGTCGTCGATTACATGACCACTCCACCAATAAACTTCACTTTACAAGACTTTCG 480
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 386 TGAATCCGTCGTCGATTACATGACCACTCCACCAATCAACTTCACCTTACAAGATTTTCG 445
Query 481 CCGCCTCGTCTCAATGTGTCCAGAGCTTCTCACTTCACCTTTAACCTCACACACAATCCC 540
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 446 CCGCCTCGTCTCCATGTGTCCCGAGCTTCTCACTTCACCGTTAACCTCACACACAATCCC 505
Query 541 AGTCATCACTTTCCTCCTCCGTGAAGTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 AGTCATCACTTTCCTCCTCCGTGAAGTCGGCGTTGACTCTATCTTTGACCTCCGTCAAGC 565
Query 601 TTTACGACGTCGTCCTCGTCTTCTCGCTTGTAGCGTCGATCACCAGCTTAGACCAACGCT 660
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 566 TTTACGTCGTCGTCCTCGTCTTCTCGCTTGTAGCGTCGATCACCAGCTTCGACCAACGCT 625
Query 661 TTACTTTCTCCAGAGAATCGGAATCTTAGATCCGCATAAACATACGTATCTTCTCTCTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TTACTTTCTCCAGAGAATCGGAATCTTAGATCCGCATAAACATACGTATCTTCTCTCTTG 685
Query 721 TAGCGTTG-ACAATAAACTCGTACCACGGATTGATTACTTCGAGAAGTTAGGATTCTCGC 779
|||||||| || |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 686 TAGCGTTGAAC-ATAAACTCGTACCACGGATTGATTTCTTTGAGAAGTTAGGATTCTCGC 744
Query 780 GGCGGAGCGCCACCGCGATGTTTAAGAGATTCCCGCAGCTGTTTAATTACAGTATTGCTG 839
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GGCGGAGCGCGACCGCGATGTTTAAGAGATTCCCGCAGCTGTTTAATTACAGTATTGCTG 804
Query 840 AGAATTATGAGCCGAAGTTGAAGTATTTGATGGTGGAGATGGGGAGAGATGTTAGAGAGG 899
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 805 AGAATTATGAGCCGAAGTTGAAGTATTTGATGGTGGAGATGGAGAGAGATGTTAGAGAGG 864
Query 900 TTCTTGAGTTTCCTCAGTATTTCTCGTTTAGTTTGGAGAATCGGATTAAACCGAGACATG 959
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 865 TTCTTGAGTTTCCTCAGTATTTTTCGTTTAGTTTGGAGAATCGGATTAAACCGAGACATG 924
Query 960 AAGCTTGTGCTGCGAAAGGTGTGAGGTTTCCATTGCCGGTGATGTTGAAGACTAATGAAG 1019
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 925 AAGCTTGTGCGGCGAAAGGTGTGAGGTTTCCATTGCCGGTGATGTTGAAGACGAATGAAG 984
Query 1020 CTGGTTTTAGAGATACATTGGAGGTATGTTGTGATTCTTCTCCGCCATTGAAGACCTCTC 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 985 CTGGTTTTAGAGATACATTGGAGGTATGTTGTGATTCTTCTCCGCCATTGAAGACATCTC 1044
Query 1080 GCCTTGTTACTGTACAAAAAGATTCTTGATTTATAGAGTTTTGTGTGCTAGGA----G-A 1134
||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1045 GCCTTGTTACTGTACAAAA-GATTCTTGATTTATAGAGTTTTGTGTGCTAGGAACTTGGA 1103
Query 1135 ACATGGAAGCAAGTACATTTTTGTAATGAATGATGATGAAG-AACTCAATGAATGAAGAA 1193
|||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||
Sbjct 1104 ACATGGAAGCAAGTACATTTTTGTAATGAATGATTCTGGAGGAACTCAAAGAATGAAGAA 1163
Query 1194 ACCAGCCTCTGCCTACATTTTGAGACACACACAGG-GATGGTGAG-TTAAATCTT-GATA 1250
||| |||||||||||||||| |||| | | || |||||||| || ||||| ||||
Sbjct 1164 ACCGGCCTCTGCCTACATTTAGAGAG-CG-AG-GGAGATGGTGAAATTGTATCTTTGATA 1220
Query 1251 AGAGAAAGAATGTTCATTTACAATTCACGA-T-TCCGATGTATTTCGGT-CTAGTTATTG 1307
||||||||||||||||||||||| | || | || ||| | | || | | | | ||
Sbjct 1221 GGAGAAAGAATGTTCATTTACAAT--A-GAATGTC-GAT-TCT--CGATTCC-GATGTT- 1271
Query 1308 TTAGTGAACGAGAAATCAAGTGTATGTAAGTCCAGAAACCGTGTAGAGTTGCGATTTGCA 1367
|| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 TT--T-AA-------TCAAGTGTATGTAAGTCCAGAAACCGTGTAGAGTTGCGATTTGCA 1321
Query 1368 GAGAATTGTGA-TTCTACAATTGGAGGCAAGATGATGAATGTGTGAACTGATTAGCGTAA 1426
||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1322 GAGAATTGTGAATTCTACAATTGGAGGCAGGATGATGAATGTGTAAACTGATTTGCGTAA 1381
Query 1427 CGGTTTAGTTATTGGTCTT 1445
||||||||| |||||||||
Sbjct 1382 CGGTTTAGTGATTGGTCTT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54659501575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5